morexGenes - Barley RNA-seq Database

Contig contig_1569449

Source Contig contig_1569449

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1569449 (2672 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1569449

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14937	1	634 bp	MLOC_14937.1	Available	Available	None
MLOC_14936	3	1964 bp	AK248465.1	Available	Available	None

CDS Structure of MLOC_14937

CDS Structure of MLOC_14936

Contig Sequence (2672 bp)

>contig_1569449 2672 assembly3_WGSMorex_rbca.fasta
ATACATTCGTATGTAGTCCACTAGTGAAACCTCTTTAAAGANNNNNNTTTAGGAACGGAG
GGAGTAAATGACATCTTGATAGACTTATAAGGATATATTTAAATGAAGGATGAGGCAAGA
GGTTGACTAGGGAAGAACTTAATAAGTAAAGAATTAAGGGAAGTTCGATCAAAATGCCAC
GTCTTAGTTTTCCTCTTGATAAAAGATGCCCCATCATGTGTCACTGACAGGTGGCCCTGG
ACCCCAAATGTCAGTGACGCATGCTATGATCACTGAACTGGATAGAGTTAGGCCATATTT
CTACCTGCTAGTTTGTTGTGCAGTGGCATAAGTGCATAACTGAAAACTCCTAGAAGCCTA
CAACTTGGTAGCTTGTATTTTCTAGAATCCTATGAGCATATTAAAGGGAGTTGAAACGGA
ATAGCTATATAGAAGTTTATCTTCAGAAGTTGTTTATAAATGACACAGTTAAAACTGCCC
AACTTAATCTCCTTTGCAGATAATTTTCTGCACTTATTTGGATGTTGTAACGAATGAGCA
TTTTGTTGTGAGATAGTGAGCTATCTGATCCTTGTTGGCTAGCTTTTTAGTATGTTTGTT
ATTGACATTATTATTAATGTTACATTTCATGAGAAGTTTGTGGTTGTTTCATTTTGCTGG
AAGCTTTAAGTTGTTACATTTCAATGGAAGTGTCATGTGGTGACTATCAGAGTATGCACC
TTGCATTAATTCCATGTAAAGTCAAGAAATTGCATTTCAATTCCTCCCATCCTAGTTAAC
ACCTCAACTGCTCATTCCATGTAACAGATTGCTGTGAAAAGGCTCAAGAGTTGGAGCAAC
AAGGCTGAAAAGGAGTTTGCTGTCGAGGTCGAGGTTTTGGCACGAGTGCGGCATAAGAGC
CTCTTGAGCTTACGTGGGTATTGCGCTGAAGGCCAGGAGCGTTTGATTGTCTACGACTAT
ATGCAGAATCTGAGCTTGCACTCTCACCTGCACGGACAGCATGCAGCTGAATGTCATCTT
GGTTGGGAGCGAAGAATGAATATCGCCATTGATTCAGCTGAGGGCATCGCGTAAGCCTCT
CAACATCAATTTATAATATTCAATCATAATGAAACAGCCTAATAAACACTTATACATCTC
TGCGTCCTGCAGTTATCTTCATCACCATGCGATCCCACATATCATCCATAGAGATGTCAA
GGCAAGCAATGTCCTCTTGGACGGTAATTTCCAAGCACGGGTCGCCGATTTCGGGTTTGC
GAAACTCATACCAGATGGTGCGACCCATGTCACCACAAAGGTGAAAGGCACACTCGGCTA
CCTCGCACCGGAGTATGCAATGCTTGGCAAGGCCAAAGAAAGCTGCGACGTCTACAGCTT
CGGAGTGCTGCTGCTAGAGCTTGCCAGCGGAAAGAAGCCAGTCGAGAAGATAAACCCTAC
GACAAAGCTAACCATCACCGAGTGGGCGCTCCCACTCGCTCGCGAGCAGAAGTTCAAGGA
GATGGCTGACCCAAAGCTCGGAGATAGCTTTGCCGAAGCCGAGGTGAAGCGGATGGTGCT
CGTCGGGCTTGCTTGCACTCAGACCAAGCCAGAACAGAGGCCGGTGATGTCTGAGGTTGT
GGAGATGCTCAAGGGGGAATCTGCCGAGAAGTTCTCCGTCTTGGAGAATGACGATCTGTT
CAAGCCTCAACAGACGACCAGCTCCATCCAGGGCACCTCTGGCCCCTGCAGCTCGGACGC
TATCACCGAAGAGAAGGAATCGAAGGAGGATACGATCGAGGAGGCGACTGATTCGAGCGA
GACGGTGCCCTCAGCTAGGTAGCTAGTGTGATGATGCACAAATGTGTGTGTATCCCTTCC
TGGGAAGTGTGGTTTGTGTCTGTGTGTGCGTATGGTTGTTTCTTGTTGTTGGCAGGTTGC
TTGGGCCATTTACCAGTCCAGAGATGTAGTCGTTTGGGTTACATGTATGGTTGATTTCTT
CTGGCAATGGTTGCTATATGGCTTGTAAGATTCTTATTGGACTGGTTGCGACAATAACAA
GTTGTCCCATGTATTCCTGTACTAGCTCAATTTAACTCATAATTTCTCTGGTGTGCAAAA
CCTACGGCTAGCGGCTTATGCCTGTGCAAAAGATATTTTCAATCGGCAGATTTTATCATG
ATTTCGTCAGTTAATGGGAAACAGAAATTGTCCAAGCACACAAAGAGAACATAATTTCGT
TAAAAATGACACCATCTTTACGTTATATTCTTGACAAGTACTCCCTCCGTCCCAAANNNN
NNNTCTCAAGCTTAGTACAACTTTATACTANNNNNNGTACAAAGTTAAGACACTTATTTT
AGGACGGAGGGAGTATAAGAGTTTGTCACATGCTACGGATAGAATATCTGAATAGGCACG
TTTAATACAAACAACAGAAACATTTTAGTAGTATATATCAAATTTACCATATCATTAATT
TTGCACTGCTGCATTACATTTTTCTGCTTTTAGTACTATCAAATTTGTTCAGAGATTTTG
TCCATAGCATATCAGACCCTTGTAGTATTTATCAAGAATAATATAACATAGAAGTTCAGC
ATATATATATATATAGTACTCCCTCTGTTACAGTTTAGAAGGCATGCACGTGTACCTAGA
TCGTCAATTTAATTTATATAAAATATATTATT