morexGenes - Barley RNA-seq Database

Contig contig_1569402

Source Contig contig_1569402

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1569402 (7170 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_1569402

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14915	2	3408 bp	MLOC_14915.2	Available	Available	LOC_Os05g05840.1, FRAME:+2, EVALUE:0.0, 13105.m00621 protein tRNA synthetase class II core domain containing protein, expressed
MLOC_14916	2	1229 bp	MLOC_14916.1	Available	Available	LOC_Os05g05830.1, FRAME:-3, EVALUE:6e-177, 13105.m00619 protein bifunctional protein folD, putative, expressed

CDS Structure of MLOC_14915

CDS Structure of MLOC_14916

Contig Sequence (7170 bp)

>contig_1569402 7170 assembly3_WGSMorex_rbca.fasta
TCTCAACAAGCTCCTCCTCACAGCGAACGATTCCTCCTCCGCCCTCGTCACCGTCGCCAC
GGCCAACGCCCTCGCCGGGTCGCCCGAGCTCGCCGCGGCGCTGCCACTCGCCACCCGCGA
CGAGGCCGCCGTCGCCGCGGCGTCCGCGCCCGTGGCCGTCGCCTTCGCCGCCTTGATCGA
CTGCTGCGCCACCCCTCTTGCCCGCGTCGCCGACGCCGTCGCGGCGCTGTCATGCGAGGC
CGCGCGAGGGGACGCCACGGCGTTCGACGTGCCCGCGTCCGGCGACGGCCTCTCCGACAA
GGACGAGGCTGATGTGGGCGCTGATATCAAGATGCTTTTATTGGGGTCCAAGCTAGTGGG
CAACGGTGGAGGCGCCTCTGCAGCCATGTTCGCCAAGGTGCCCGCCGTCAACGGGGCTCT
CCGCGAGTCGGTGCGCGCTCTGCACAAGAAGGTGCGGGTCGAGCTCAACGCTCCCGTGAA
GCTGGGGAAGAGGGATGCTAGTGGAACGGGTGAGGGAAAGGAGGAGGCGTTGATGGTCCT
GGCGACACAGCTTGCTAGATCGTTGAATGCAATGTGCAAGCAGAGCGTCGCTCGGGCAAG
GTTCTGTGCAGGGAGCGTTGCTGAGGCCGAGCTCCGGGAGAAGCTTGCCGGTGGCGTTAA
TGTTGATGATTTGAAGGGGATGCTCGATAAAGTTATGGTTGATTCGGACGCGGTGTCGGT
ATTGAGGGGGGTGTACAATTACTTGCTCAAGTTTAGGGACTTCCTTGCATGGGAGGCAGC
TGTGGCGATGGCTGTGATTGAAATGGACAGTTCAATTGAGAAGCCTCAAGCTGCTGGGAA
GAATGAAGCTGGCAGTTCAGCGGAGAAGGCACAAGCTGGCGGGGAGAAAGTGAAGGGTGA
CAGGAAAAGCAAGAAGAAAACGTTGGGGAAGGGAACATCTGCTGTACTTGCTCTGCTTAG
GGAGCATGCTACAGATGGAAAAACCATTCCTTGTGTGAATTCTGCGTTGATTGCAGATTG
GGGAATTGAGCTGTCTCTGTTGTTTGATCCTAAGTGCCCCAAATTGGAGTTCCTTGTGGA
GAAAATCAAGGAGATTGTGGAGAGCAATGAAGTGGGAAGATTGCCAAAAATTCCCAAGGT
AATTACCATTTTACTTGCACACGTGGATGCTACATTTATGTTGTCTTGTGTTGTCTTTCT
GCCTCAATTGTTTCTGTTGAGTTGATTTCAGAAGCATCCTAATAACCAGTTTTTTTTTTT
TACTATTTCTCTATCTAAATGCTTATCTTACTCTCGGCTAGGGAACACGTGACTTTGGGA
GAGAGCAAATGGCCATAAGGGAGCGTGCGTTTTCAATAATTACAAGTGTATTTAAGATGC
ACGGTGGTGTTGCACTTGATACCCCTGTATTCGAGTTGAGAGAAACCTTGATGGGCAAAT
ATGGTGAAGACTCGAAGTTGGTATATGACCTTGCTGATCAGGTAAAGTTTTTATGTCTTT
TTGTACTTAACGTAAGTAGGAGTGTGTAGCACACTGGGATATCAGAACTTGTTTAGTTGT
CATGTGCTGGTTTGTTATATAAATTATTCGTTCAAGGTTAACGGGGAATTGTTAGTATCC
AGCAATTTTGCCATTCCTTTGTTGCAGTATATTCCTTGTGTTATACTCGTGGTAATAGTT
TAGATGAAGTCTTACCATCAAATAACCTGCAGGGCGGCGAGCTTTGTTCATTGCGCTATG
ATCTGACTGTTCCATTTGCCCGTTACGTTGCCATGAATAACATAAGTGCCATAAAGAGAT
ACCAGATAGCCAAAGTATACAGGAGAGATAACCCATCAAAAGGAAGATATCGAGAATTCT
ACCAGTGTGACTTCGACATTGCCGGAGTATATGAGCCTATGGAACCAGATTTCGAGGTTG
TCAAAGTGTTGACTGAATTACTGGATAAGTTGGATATTGGCGTCTATGAGATAAAGTTAA
ATCACAGAAAGTTACTTGATGGAATGTTGGAGATCTGTGGCGTGCCTGCTGAGAAATTCA
GAACAGTTTGCTCAAGTATTGACAAGCTAGACAAACTAACCTTTGAAGAGGTGAAAAAAG
AACTGGTGAGCATCCCAAACTCCTTTTTTTTGCTTTTATATGTTGATTGATGTAATCTTG
ATTTTGATATATTTGTCGTAGTCCTAATTGTTCTTATGCTGACTTAGGTGGAAGAGAAAG
GTGTATCAAATGAAACCGCTGAAAATATTGGCAGTTTAGTGAAGACAAGAGGACCTCCAC
TAGAAGTTTTGCTAGAGTTGCGAAAGGAGGGCAGCAAATTCATGGAGAACGAGGGATCTG
TTGTTGCATTAAATGAGCTGGAGATATTATTCAAAGCTCTAGAAAAAGCAAATGCCCTTG
ACAGGATAAGTTTTGATTTAAGCCTTGCTAGAGGCCTTGATTACTACACAGGTGTGATAT
ATGAAGCTGTGTTCAAGGGAGTCACACAGGTTTGGAATCTTCTTTCACATCTGCGCCTCA
CTTGTTACCTGTGTTCTCACTTAGTCATTTGTTTGCTATATACTGGTCATCGTTTTGTAT
TGCCAGTGTTTTCAATTAATCTGCATTTTAAGATTCATTGCTTGATATACTGGTTTCTGA
CATGTACCATCCTATTTCTCATCTCAAAGCATATTTGACATTACCTTTTGTCTGCTGTAA
CACTACAATTGATTTACTGTACATTGATTTGTTATATCTGAAAACTTCAATTATTCTCTG
GGCTTTGTTTTATACTATTTCCAGTGCTTTCAACCAATCACCTTTCTAAGACCAATTGCT
TGACCCATTCGATTCTGAGATCTCAAAGGATATTTTGCATTTCCTTTTTCTCATGTACAT
TTTCTTTGGCTTACTGTACATTGATCTATATCTGAATTTTCTTCATCATGTTTAAGCATG
ACAAGTACCTTTACTAACTAAGCGAACAACCCTTTGCTGATTCCTGTACTCACAATGTTT
TGCTGTAGGTTGGCTCTATTGCTGCTGGTGGCAGGTACGACAAGCTTGTCGGCATGTTCA
GCAACAAGCAAGTCCCTGCTGTTGGCGTCAGCCTTGGAATAGAAAGAGTCTTTGCAATCA
TGGAGCAACAGGAGAAGGAAAAGAACCAGGTATTTCTCAGTGCCCCTGTCGTTATGTCTT
TGTTGCAGCAATGTAGCAAAACTGATCTTGGTTCTTTAACTGCAGGTGATCCGGGCGACC
GAGACGGAGGTTTTGGTGTCGATTCTGGGCAAGGACCTCATATTGGCCGCTGAGCTTGTG
AACGAGCTGTGGAGTGCTGGGATAAAGGCAGAGTTCAAGCTCACCACCAGGGTGCAGAAC
CACATAAAGTACGCGACGCAGACGGGCATCCCGTGGATGGTGCTGGTCGGCGAGTCCGAG
TTGAGGGATGGGAAGGTGAAGCTGAAGGACATCACGGCTAACCAGGAAGAGGAGGTTCCG
AGGAAGGATTTCGTTGAGGTGCTGAAGCAGAGACTATCTAACCCCTAGAAGGTAAATCTT
AGAAAGATGTAGCGTGTGCGTGAGTACTGGGCGGTATGTGGTTCTTGGTTTTTCTGTGCG
GCCATTTTGCTGTTGCTGAGATGTGTACACAAGACAGTGCGGCTCCTCGATTTAATACTG
ATGATCACAAATTGTTTGAATTGTTGCCTTACATGTTAAGTGCTTGGTGGAATGAAATCC
CTGAATTCCAAACTTACAGTACAAATAGCTACCAGATCCCTTTGAGCTTCGAATTTTGTT
GGTGTTTAGATAGGTATCTAGTGTCAAGCAGGTTGGTCGCTCTCATGGATTCTCCATGCT
TCAGTGTGGTTGCTGACCAGAGAGGTTGCTCAGAGGCCACATACTCTATCTGTTGCTCAG
AGGCCACATACTCTATCTGAGCGCATCTGGAATTCTGGATTTGCTTCGTCCCTGCCTCGC
CAGCGGCAGCTCGCTTTTGAGCGTGTAGGGCGTTCAGTGGCGCCTGGTGGTGGCAGCCAA
AGCGCCGGCTTGCTGACGGCAGGCTCAAGCCAAAACTACAGTCATAGACGGCATGTTGCA
GCCTGTGTTCTTGACCAAAGCGTGCATGGTCCTTGTGCGGTCATCCATCTTCTGTTTTTC
TCAGAGCCATGTAACTGGGATCATCTAATCCCACCCTTGTCCTACTGATGAAATATAATG
CATGGTTCTAGTTTGCCAAAAGAAAAAGGACACCCCAACTAGTGGGTGTCGTTTATTGTT
CTCGAAATTGCGTAAAGGCATAACAAAATGGAGAACCGGTTTTAGTCTAGGCACTCAGTT
ACAACATCATCCTCACATTACCAAATCACACGTCAAATCGGTTGCGGCGAGATAAAGAAT
CTACAAGACTATACCCCTCTGGGCGCCGTCCACCGTGTTCTTCAGCAACATTGCCACGGT
CATCGGCCCAACGCCTCCAGGGACCGGAGTCAGGTGACCCGCGACCTTGCTTGCCTCCGC
GAAATCCACATCGCCAACGAGCCTGTACCCGGACTTCCTGGTAGGGTCGTCGATGGAGTT
TGTACCGACATCGATGACTGCCGCGCCTGGTTTGATCCAGTCTCCCTTGATCTAACAACC
AAGAAAACACAGCTGTCAGAATTAAGGAAATAACATAGCATAGGGTGGGATTATCGCTCC
AGAATAATGTACCATCATGGCCTGGCCTGCTGCTGCAATGACAATGTCTGCTTGACAGAC
AATCGTTTCGGGATTTGGCGTCCGTGAATGCACGATCGACACGGTAGCGTCTGCTTTCAG
AAGGAGAAGGGATACTGGTAAACCCACGATGTTGCTACGCCCAACCACAACTGCGTGCTT
TCCTTTTACAGTGACTCCACTGCGTGACAGGAGCTCCATGCAACCCTTCAGAAGTAAAAA
AGAAAAATGAAGGCCAAAATGTTACAGATAAAAACGGCGGTCAAACCAGTGTTGAGAAAT
GCTGTGCTCAAGCATCGCAATCAAAACCTTTGGGGTACAAGGTAGGAACAGTGGATTTCT
GCCTTTCATTGCGAGCTTGCCAATGTTCAAAGGATGAAAACCATCGACATCTTTCTCAAT
GGAGATCTGGTTTAATATAATTTCTTCGTTGATATGCTTGGGCAATGGAAGCTGAACAAG
AATACCTGGTGCAAAAGCAAAGACTCAATAGAGTCAATATACAAGCTTTGCTACATGTAG
GAATAAGAATTCCAAATATCAGACTGTAGAGGTACCTAAAGCCTAGAGCTAGCAAAGCAA
CATTCTAGCAACAAAGTAAATCATATTGAGTAAATCATATTGAAATAGTACTTATCTAAG
CAATTAAGAAGCTGGCAACCACATTTCAGAAAGAAAGCTGATCGATCAAACCTCCAATTG
TATCCTATAGCTTCATATTTGCCTTCTAAGGAAACTGATGATTTACACTAGAAGATAGAG
ATGGTGATCGAACTAGGGTAACAAATCTCTAATGGTCCGATAGGATGAGAACAGAACTAA
CTAGTTAGTAACATGAATGCATGATTTACAATCATGTCTTAACAGAAAACACCTAGCATA
AGCGAAGCAATCATTCCCCCAAATAATAGACATTATGGTGATGTGAACTAGGACATGTCA
TTCTCTTCACATGTGACTTGAAATAACTAAAGTCCATGCCTAATCCAGTGAAGCGATCAC
TTAAAATTACATTCCCAATCAAGTTAATCCCTCAGAAACAGGGGAACAGAACACACAAGA
TGATGAGTACTGATGCCATTCTGGGCCAAAATTTTGGACTCCAGCACGCCTGGAATAACT
TAAGAACAACCAAAGAGTGTCACCCCGTGAAACAATGTCCGAGTTCAAAATTATATTCCA
AATCAAGCGAATCTCCCAGAAACTGGGAACGAAAACACACATGATGGTGAGTACTGGTGC
CATTCCGGACGAAAATTTGGGATCCAACACGCCTGAAAACAACTCAAGAACTCCCAAAGA
GTGTCACCCTGTAAAACAATGTTCCAGTTCAAAGGATTGAACTATACACGAATAAACTAG
ACCAGACTTCTCTATTCTTTCACGCTAACTCAACTGAAGAGCAAATCCGGGCCAGGGAAT
CCCAAGCAGCAAACGAATGGCATCCCACCCACGAAGGATCGTCAGCTCGAGTGTCACTAG
GACCGAATTTAACCGTCTACAAATTCTTCTGAACAAACCAGCTAGGAATGACTGCATCTA
CGGCACAGGCAGACTGACAAATCAGAGAATTACAGTGCCAAACACTGAAAGCGTCCATCT
TCTCCTAGTACTGCCAAAGGAAGACTACTGTATATCCGATTCGATTGCGGAGGAGATACC
GTGGACGGCGGGGTCGGCGTTGAGGCGGTGGACCTCGGCGACGAGCGCGGCCTCGGAGAT
GTCCTCGGGGAGGTCGACGTCGAAGGAGCGGATGCCGACCTCGGCGCAGGCCTTGCGCTT
CATCTGCACGTACGTCTGCGAGTCCTTCCTGCTCCCCACGATCACCACCGCTAGCCCCGG
CACCTTGCGACGGAAACAAAGTCAGCGTCACGGACATTATCCCAATCCATAGCTGGTCGA
TTGGCCGAGCGGCGGCGTCGGGTGGGAAAGGAAGGGGCTCACGATGCTGTGGGCGGATGA
GAGCGCGGCGACCTCGGCGGCGATCTCGCGCCTGATTTCGGCGGCGATGGCCTTGCCGTC
GATGATTTGCGCCATTGGGGTAGCACTAGATTCTCTCCCCTCCCTCCCTCTCTCCTTGCA
GCGACGACGACTGCGACTCGAGTGCTATTTTTTTAGGGGACTCGAGTGCTTTTTTTAGGG
TCTCGTTTGCTCTTTTTTTTTTAGGAAAACGCTCTAGATCAACCGGCTGATCCGTTCGGT
CCCTAAACCGGCTCACGTGCCGTCGGATCGAACGAAATCAGACGATTCAAAATCGTTCCA
TCCGGACAGTGGGCAGCGCCGAGTCTCCGACCAGGTTGCAGCACGCGCCGATCAATCAGG
TGTTTTTTTGGTCCACGAGAGTCCACCCCGCTACATTGCAGCTCGCCCTTGAGGATTGCA
ACTTTCCCTCCTCCTCTTCCTCTCTCTTGCTCGATCCACAACTGGCGAGTGCGACGGTCG
GCGCGGCAGCTGGGCAAGGGACCGGTGGCG