Contig Data
morexGenes
Links



Map Locations of contig_1569284 (6538 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1569284

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_14877 1 2758 bp AK362002 Available Available None
MLOC_14876 1 647 bp MLOC_14876.1 Available Available LOC_Os03g55840.1, FRAME:+1, EVALUE:1e-42, 13103.m06082 protein pentatricopeptide, putative, expressed





CDS Structure of MLOC_14877






CDS Structure of MLOC_14876






Contig Sequence (6538 bp)

>contig_1569284 6538 assembly3_WGSMorex_rbca.fasta
AATGCCCGAAATCCTTCCGAAAGCCAAATGTATCCTTCCTATATACCAATCTTTGTCTCC
AAACTATTCCGGAACTCCTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTC
GGTCACCAACATACATAATTCCACTCTACCGAAACGTCGTTAAACTATAAGTGTGCAGAC
CCCGCGAGTTCAGAAACTATGTGGACATGACCGAGACACTCTCTGATCAATAACCAATTG
CAAATGAATTGAAACAGAGAAAGAAAAATCAACAAAATCGATGAAAATCAAGAAATAAAC
AAAGAAAGATGAAGAAACTAAAAAAGAAAATCAAAGAGGTTGGTGAACACCAAGAAAGAC
ACAAGAAAACAAAGAAAAATGACGAAAACCAAGAAAGATGCAAAGAAAACAAAAGAAATG
ATGAAAACAAATAAAGAAACAATAAAAGGCAAAGACCAGTGAAGTACGAGAAAGACACAA
GGCAAAACAAGGAGAAAGCAAAGCAAAGAAAAGAAAAACAAGTGAAATCATGAAAGAAAG
AAGAGACCCGTTGAAAAAACAAAGAAAAAATGAAAAATTAATAAAGGAAACAAATGAAGA
AACAAAGAAAACCGAAAAAAAGAAAGCGAAGAGGCTCACTTAGTAGCTACAGAGTGAGGG
ACGGTGGACGCTTCAAGCGAGACCGAAGGTCTACATATTGTGAGCGAGATATATATGTTC
TGCATCAATGTTTAAGCCGAAGGATATGAGAGCTCCCCTTTAGTGCCTACTAGGGGCATG
TTTGCCGACACACCACTCCAACGAAATTGCCCGCTCCGCTCCTCTCGGCGCTGGAAGCAC
TCTAGCGAGCAAGTTGAGCGGTCATGGAGCGTTCGGTTGGCCCCGCTCCAGGAAAGCATA
GGCTGCCAACCGATTGGAGGCAAATACAACCCTCTCGAGTGCGATAGAGAGAGAGAGAGG
CGACATAAATGGGAGCATACAAGTTTGCGTTTTTCACTTGGCGGTGGCATTTTATGTAAT
TTTGACTCGATTCGGATTTTGCTGAAACAATGAGTGACAGAAGGGTTGCTCCAAAAAAAT
TAACTATGCGCCGCTCCGCTCCACCACTTCAGCCCCACAAATTAGGGGAGTTCGGGTACG
CTCCGCTCGCTCCGACAATGGAGTTGGGAGCAAAATTGTTGCCGGACGGTCTCTAGCTTA
TCTTCTAGACTGTATTCCTCGAAGGTCACTAAACCAGCTCTCCATTATCCGTTTTCAATT
ATATTTGTTTCGTTCGTTCATTTTTCTTCCCTCCGTTTGATCATTGTGAACACGAGTTCC
ATTACGTTCCGCATTCAAAAAAATACATGAAAAAAGGAATATAGAACTTCAAAAATATTG
AGAATAAGGTCATCTTTGATTTATAGGATTTTCAAAACGCGGCGATATAGAAAATATAGC
TTTTGAGTGGCATGTACACTTGGATCCTATAGGATTCACATAGAGTGTTTGGTGCAAGTG
AAAAAAGAAAGGAATTGGAAAAGGAAGTTGGATTTCATGCTAGATTTACATTGAAATATA
ATACATTTGGTTCCATAGGAAAAAATCCTATAGGACCCAATCATGTGAATCAAATGACAA
ACGTAGGAAAAAATCCTATGGATTCTAACCCTCCAAAAATCCTACGAAATTGCTTTGAAT
CAAAGGAACCCTAATTGGAGTAACAATAGCCATAGGAACAGATCCTTCATGTAAAACAAG
AAGAAATAAAGAAACACTAAACTACTTTGTTCATTGGGTATTAAGCCTAATAAGAACTAT
AAAAAATTACATCTTGGAAGTGGAGTTAGTAGTTTTATTCTTGACACATGCCATTAGAAT
AATAATTAGAAAAAAGGATATTAGATGAACCGGTAAAGAAAGATTAAAAATGATGGAAGG
ATACATAGAACACCATTATTTAAAATGAATATTATCTACTAAAAAAACTCAACATAAACA
ACCTTCACAGATCTATACAGGAATAAGAAAACTGCATAATGAGAAGTTGTACTGAATTAT
ATTAACTTAATTGAATGTCACAAACATTAATTGAATTTCATGAACACCATTTGAATTCCA
TGGATGTTGTTTTAGTACGAAGTACTACTCTCCATCCCACAACATAAGATCATTCTTCAA
GCTATGTTAGCTTCAAAAACAATCTTATATTGTGGGATAGAGGGAGTGCATTTTTCTACA
TTTCGTGAATTTCACTCGAATATCGTGAACCATTTTTGGATTCCATGAAGTTCATTGGAA
TTTCTTCAACATTTATTTGAATTTTGTGTAGATTATTTTAATTTTATGAACATTTTGATT
GGATGAAACAAAATGTAAATTCCTTGAACTTTTTGGAATTCCATGAACTTTTTGTGACTT
CATAAATTTTGAATTCACTAAACTTATACTGGATTTCATGCACTTTATTTGAATTGCATG
ATTTTTTTTAATTTGATGAACAAATATTTTAGTTACATATACATTATTTGAGTCAATGAA
CTTTATTCGAATTTCATGAACATTATTTCAATTTCATGAACTTTATTTGGATTCCAGGAA
AATGTTTGCGAATTTCTTGAACATTATTTAAATTTCATAAAAATGATTTCCATGAACTTT
AAGAATAATTTGAAATTCCGTGAATTGTTTTTGAATTTATGATTTGTGTGAATTCCATGA
ACATTTTTTAATTCCGCGAACTTTTATTGAATTCCATGAACTTTTATTGAATTCCATGAA
CCTTATTTGAATTCCATGGAAAAATATTCAATTTTCATCAACATTATCTGAAGTCCATGA
AGTTTATTTTAACTTAACGAACACTTTTGAATCTCAAGAACTTTATATGAATTTCATGAA
CATTTGTTGAATTGCATTAATATTTCTCCAAGTACATGAATGTTTATTTGAAAAAATATC
TTGTATATAGAAAAAAGGTTCATGAATCTGGAAAATTTGGTAGTCGGAAAAAGTTCACAG
TTTAAAAAAATCGTGAATTTGCATTCATTCATGCGTTTGAAAACTTACGTATATTCAAAA
AAGAAAGCAGGGGTTTTGAAAAAAGGTTCATGAATTTGGAAAAATGCAAGTTTAAAAATG
TTAACAAACTCAATAAAATGTTTATGAATTTTAAAAACTACCAACCTTGATTTTTTTAAA
GAATTTTGATTGGTTGTGAATTTCAAAGAAATGTAATTTGAAAAAAAAGTTTGCATATTT
GAAAAAGTTCACACATTTGAAAAAGGAATTCACGAAACAAAAAAAGAAAAGAAAAACTAA
AAAAAGGATCAGGAAACAACCTAACAGAAAATCAAACAGAAAACCAAGATAAAAACCATT
CATAACTTTTAGAAGCTCCCAAGAACTGTTGGAAATTTCATGAATCTTCCTGTGACATGT
TTGAAAAGACAAAGAAGCAACTCTGTACATGGGCAGCGCATTACGTACGACTACTGTGCG
CTAGTTTGCTTTTTTTATTTCTTGAGCAAAATGCACTAGTTTGCGAAATGAACTATAACT
ACCGCCTGAAGCGCTAAATAGCATGTGGGGAAGGACTTGCCTCCTGTGTAGCTTAAAACT
ATAAAAGCCTATGTATGTATGGGCTTAAGCTTACCGGCCCAACACGAATTGACATCTCGT
CCACAAACCGTGACCTCTTCGTCGTCCTCCCTCGCACTCTGCATTCGGTTACCTCGCATA
CCAGGCACTCCCCCAGTTCCTCCTCTTACCCGCGTCGCCGGCAGATATGCTATTATCCCC
AGGACTCGCGGCACCGGCGGCGTCTCACCCATCCCCCTTACTCACCTCCGCCATCCTCGG
CGACCGTGCTACTCTAGGAGGCCTTCTCCAACCGGCCGCAACGACGTCGAAGACCCGCTG
CTACAGCCGCGTTCGTAGCCGCCCGCTGCTCCGCTACGCGACCGCCGACGCCGCTTCTAT
TGCGGATATCGTATCGACCAGTAGCACTAAGTGCCGCCTGGACCGCGACCAGCTCCGGAG
GGTCTGCCAAGAACCCGACCTCGAGGGGGCAGTTAACCTGCTCGACGAAATGCTTAGTCG
GAGAGGCGGCACCGGCGCGTCAGGCCAACTCGCGCCCGAAGAGCAGGCCGCGGTCCTCCA
GTGCTACGTCGACGCGCTCTCGCTGGCCTCCCTCAGACGAGGCCATCGCCTGCTCTCCAA
GTCCACGTCCCGGCACTCCGGGATCGCCACGCCCATCGTGCTCAGGATCGCCACTCTGTA
CTGCAAGCTCGGCGCACCCGCCGACGCGCGGCGCGTCCTCGAGGGAGCGTCGAGGCCGGC
ACCGGGGAAGCCCGCGGACGCGGCGCAGGCGAAGCGGAAGGAGGCGTACGAGAAGGTGCG
CGAGCTGCATGAGCAGATACGCGCGGCGGGGTACGTGCCGGACACCCGATTCGTGCTGCA
CGACATTGACGAGGCCGCCAAGGAGCGCGCGCTCATGTACCACAGCGAGCGCCTGGCCAT
CGCGTTCGGGCTGGTGAGCACGCCGCCCGGCACACCGCTGCGGGTCATGAAGAACCTCCG
CATCTGTGGGGACTGCCACAGCGCCGTCAAGCTCATCGCCAAGGTGACCGGCCGCGAGAT
CATCGTCAGGGACAACAAGCGGTTCCACCATTTCAAGGACGGCGCCTGCTCCTGCGGGGA
CTACTGGTGAGACAGCCTGCCATTGGCATCCATTTCTCTCTTACTCTAGTTTAGTGTCTC
GACGAATCCTGTTAATTTTGGCAAAGGCTTTTTGTCTTGTATAAGTGGTGAGAACAATGA
GGCAATTTGTTTAGCCAAAATGTGACATGATGCATTAGCCAGCTATAGATGACACATGGA
ACGATTGTGCACTGCTACAGCGAAATTTGATCGATCAAACATGATGAAGCTCACAATTCC
TCCTAGGAAAACCCCTCGTATTTTCACAAATCGAAGCAAAGAATCAAGAGAACAAAACAG
GGAAGCTGAGGAAAGCTATCATGTGCAGTGGGGAAGGAGGAGGTATCAGGGGCTCTGCTC
AATCCGTGCCCGGCGAGGCCGCGCCACCACCGACCGCGGCTGTGACTGGCAGACCTGCGC
CGGGAACTTGCATCCGAACCTCTTGGTCACCATTGAACCCCACCTGCCCTCCGCAGCCGG
TGCCGCGCCCCTATCCCCAGCGGCGCCGCCTCGGCGGTCTATCTTCTGAATGGCTTTCCT
CATGGTGGTGCACTCCCGCTCTAGCTCCTGCACCCGGTTCCGCATGCTGTCCATGTCCAG
CCTGAGCATTTGGTTTCCCCTGGTCGCCACCCGCCATGTCCGACCACCATCGCTGTCGCC
TTCTTCCTCTCCTTGGACTGCTGCACCGCCTTCATTCGCCACCATCGTCCGGGCGATGGC
CCGGCGCAGCTGGAGCTGCTCGAAGAAGAGCACCTGCACCACCGTCCGCAGCGGCAGACG
CTCGTTCTGCGCGGCATGCGTGCACGCCTCCAGCGTCAGCTTGCGCCCGTCCACCACGCC
GCTCACCTTCTCCTTCTCCTCTTCCCTCAGCGCTGGATGTGCCTGCACAAAGAACAGCAG
CGGCTTCTGAGCACCGGCATTGCGCCGCAAGCATCGATCAAGATGGCATTCGAAATGTGC
TCGGCAGAAACCTTGATGTAGATGTCGACGGCACGGTAAAGGCCGTCGTCGTAGACGCGG
GCGCCGTCCGGCAATGCCCATGCGAGGTCGCAGAACTTGTCTGTCTTCAGGTTGGCGTCC
GTGGCGATCTCCCCAAGGTAGGCGTCCATCAGCCTGCCCACGGCCAGCATGGCTCGTCTG
CTAGCCTCTCTGCCCGGCGTCTCCGCCTCGCTGCACTCCTCGTCGACCTCCTCGACACCG
CCGCCTCGGCCCTCGAGGAAGTGCCGCACGATGCGCTCCACACAGTCCACGTCGTAGAGC
GTCTCCACGAGGTACGAGTAGCTCGGGATGAGCAGGTCGTCGACGGCCGCGTCGGGCAAC
CTGGAGGCCACGCGCCGCTCCAGCATGTCACGGGAAGCCTCTGATGCCTGCAGAATGTTT
GCCGTGCGCAGCAGGCCGAACAGGACGCGCGCGGTGGTGGCGCCCACTGCCGTGCCGGTG
TGGGCACTGCTCTTGATGGTCTCCTCCGGGAGGTTGACAATGACGGTCTCGAGTAGCGCC
TTCTGGTCGCCGTCCGCCGACCGTGGCGCGGCAGCCGCGGCGGCGGCACCACCGCCGGCG
TGCCGGTCAGAGCGTGAAAGCCCAGGGATCGACCGCTTGGCGTAGGCGATGAGAGCCCCC
TCCAGGACCTCAGGGCCGACGCCCCGCTCCCTCATGGCGGCAATGACACGGGTGAACGTG
GACAGGGACAAGCCGGCGAGGTCGTCGAACAGCGTGGACGTGGCCCCGGCGCCGGCATTT
TTCTTGTGGCGGGGGCGGTCGCCGGCTCCCGCGTCGTTGATGGGCCAGCCGAAGAGCGCG
GTGGGCGTGGACGCGGCGGCCTCCGGGGGGGCGGCGGGGGCGGCCGCGGGGGGGGCGG