Map Locations of contig_1569008 (8549 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1569008

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_14779 3 1432 bp AK353955 Available Available None





CDS Structure of MLOC_14779






Contig Sequence (8549 bp)

>contig_1569008 8549 assembly3_WGSMorex_rbca.fasta
ATACGTTTGAGACGTATCAGTAACCGAAACCTCGTCGTGATCCTAATGAGGCTGATCTGC
AGGAGGGACCTCCGCATTATCTCTTGTTAGTGATAGGGGTGGCTGTGTTCGGCTCCTATA
AAATAAGGCGACACGTGTAAATACTTGCCGTTGATCAAAAACGCAATGCTTGTAGTGAAT
TCATTACCTCTTGGCAGGAGGAGCAATCGAAGTAGTCCCTCGGGATGCTCCACACTTAGA
GGACCTGCCACTGTTCGGCACAGTCTCAACAAACTCTATGTTGATAGGTGCCGGGCGCAT
GGAGAGACGACCGGTTGTGGAAGGGGTTGCCGCTGTAGTAGGCGGGCGTCCTTTTTGGGA
AGAAGTTTTCTTCTTTCCCTTGGTTAAGGAAGGAGGTATCCTAGGATAATCGGATATGAG
GGTAACCTCAGTGCTGTTAATGCTCATCCGAAAAAAGAACCCGTCCTCAAAGATAATTGA
CGTATACGGATCGTCATGGAATCCTAGATCGTCATCCTTAGCATAGCTTTCTGGCTGGGG
AGGAGGGAAGTTGATTTTCTCTACCCAGCGTCTCCATTCCTATTTGAACAGAGTTTCAGG
GACTCGATTAGCTAAGGATCACTGTAAATAAAAATCTGAATTAAGGGTAATGAAGTTATA
CTAACCCATTCGATGGGGTTATGACTGGAGTAGCCTTCCTTGGTGTTCAAACAGATAAAA
TCCTCTTTTTCTCCTTTGTAGAGGTCGACCAAAATGGCAGCGAAGGCAGTTGGACTAGGA
GGACCCTCCCGTTTATATCGAGTGGCATCGATTGAACCATTGTATTACCACAAGGGATGG
GACCTTTGTTGAAGAGGCTGAACACATCGATTTATGGCCGCGGCCATTACGTAGATCATG
GTAAGCCGGAAATGTGTCAGCAGTTTTACCTTAGAAACCAACCACTTCACCTTCGAGCTG
TCTTCTTGATAAGGACTCCTCGGGTGCCAACTGAACCGCTTCTTAAGTGGAGCGGATGGG
AATTCAGGCAGACCCCTTCGGACAGAGTCAAATAAAGGAACATCTTCGAGAAGGAACCAT
TCTAAGGTCCACTCTTCGGGAGCTGCCCTCGGAGTCCCTACAAGATATCCAGTTCGCGCT
ATACACCATACTTCGGCTTCGCCTACTTCAGAAATGGTCCCTTCCTTAATTCCGGGGACA
AGGTAGAAAATTTCCTCCACGGGTCGAAATGGGCCTCGCAATCCAGAAACATCTCGCAGA
GAGCAACGAACCCCTAGATGTGGAGGATGGATCCGAGAGTAAGGTGATGAAGTTGGATTC
CATAAAACTCCAATAAACCCCGTAAAAAGGTGTGGATGGGGAAGCCTAGGCCTCGTAAGA
GGAATGGAACGAAGCATACTCTCTCCGTCGTATTTGGCATGGGGAATTTATCTACAAAGG
CGTCACCATTGGCGGAGGTTAGCCCAGAGCAGGAAGGTGCCAGATCTGAGTCAGACAACT
ATCCCTGCATCTCAAGCTCACGCAAACGAAGGTGCAAGACCGAACAAGTGGCCCAATCGC
ATTGGTAAAAAGAAAGCTGGCCCAATCCCCTGGAAGAAAGCCATGAGGGCGCGAGGATGA
GCCTGGAGCATTCGCCATATCTTTGTTTCTGTGGTGTTATTCTCGACGTTGGGAGGGGAT
GGGGAGCATTGCGGAGGCACGCGCAAGTTATATAAGTAACTTATCTGTCTTCTCTTGGGA
AGGAACCACCTATTTCTCATTGGCGCACACGAATCGAGGAGGTAGTTATCCCTGTGAGGG
GAAAATCATTCATGTGGGCCCGGCGACGTTTCGTCGACCGCAGATGAGGAACAATCTGAA
CTGGGGTCAGCCGAACATAGGTAGAACTCGCCCCGCAAGCCGAAGATGTGAAAGCGTGAA
GATGGCGAGCCTAGACCGCGACATTGGAGGCTAGTTCGAGTGCTACCGAGGGAGTCCGGT
ATTAAGAGGGTATTTGAGCCACTTATCTGTTCTTGTGGATCAGACTCCTGGGGCGTTCGA
CAGTCGTTGAAGACACTAAGATCAAGGTGGACTCTTCCGAAGACTTGGCATGCAATCCAA
GACAACGTACTTATCCGCATATTCCTTTCCTTAATATAACCGTCGCTGTGTAAACCCTAG
AGCCCCTGATATCTATATAAACCAGGGGGTTGTAGTTCATAGGGGACTTACGATCATTAC
GATTAGGGTTTTAGACCACAACATCCGATCTCAAGATAGATCAACTTTGTACTATGTACT
ACTTCATTAATACAACAAAACCAAGACGTAGGGTTTTACCTCCATCAAAGGGGCCCAAAC
CTGGGTAAAACATCTTCTTCTTCATCCCTAGTTACCCATCGATCCAAGATCCACAGTTCG
GACCCCTACTCGAGATCAACCGGTTTTGAAACCGATACCCGCCGCCAACTGCCATCCGCA
GATCCCGCTCGTCGACGCCAAGCTCCCAAGAGGGAATACGACACCAAGGCGCCGTCATCA
TCCGATCACAGATCAATGTTTCCCCCGGAGAGGCTGAAATGGCTAGATATCTCCGCGTAG
GGGGTGGGAGAACAAAGCAACGATGCCTCCATGAAAGTTAACGACGGCCATAGCCGCCGC
CATTGTTGGTCACGACACGAGGACAAGACATGGTTTTCACCAAGCTCCACACCACCTTAG
CCACACATCATCCCGCATTGGCGTCGGCAAGCCCACCAAACATCACCACCATCAAAGCGG
CCCATCGACGAAGAAACACCAAGATCCGCCACAACTTTGGTTTCAAAACCAACAAGACTA
CATGGATAATCCCCAACAAGATCCAAAACTGAAAGCTTCGCGGCATACCACTGAACACCG
CCAAAATTTACCCAATCTTATAATGGAGAACACACGTAATAGTGGATTTGGATGTGCCAC
TTATGCATGCATCGCACAGTCACAGTCACCAGCAGTAGTTGTTGCGATTCTAAAGGGAAC
AAGCAAGAGAACAATCATGTGAACAAGCAGGAGATCGAGCAATCATGTGAATAAGCAGGA
GATCCAACAATCATGTGAACAAGCAGGAGATCGAGCAATCATGTGAATAAGCAGGAGATC
CAGCAATCATGTGAACAAGCAGTGGAGCAATTACGTAAGGTACGAGCCTAAGATACGCTT
GATGCCATCAGCTTACTCCCTGATGATTGAAGTGATGTTGATCATTGTTGCCCTCGTCCC
CGCGTCGTGCATCCTCATGAACCCGCCGCCCCTCCACGTCTTCTCCGTGGCCAAACTGAA
GGCCTTCACAACGGTCAACGGGTTCCCGACCCTGCAAGCCGGCGATGGTGGTGGCGTGAA
ATCTCGTTTGCCATTATCGCCACCATCAGATGGGCTCACTAAGGGGATCAGGCTATGATG
GTCATCGCGGGCATCTCATCGGCGACGGAGATCCCAACCATAGAGACGAAAGAGCAGATG
CACACATATGCGATGGTGGTTGGTGGAACACGTACCACCTACGGCCGCACATGCGGCGAC
CAGTTTTCACGGGAGATAGATGGGATCTGGAGCAAGGATTGTTGGGAGACGAGAAGTGCC
CTTTTGGGACTTTCATGGTGGGTTGATGCAGTTTCCGTTTTTTCGAGTCGTGCATGTGGG
ATGGTCTTACACATGGTTTTCGCTCGTTTTCTGCTGGTCTGCGTAAGTGGGTAGTTTTTC
ATCATACGAGAGGCGTGGGCTAGGGCCTAGGAGGTGAAACCATCACTACGACGTTCGATC
CATTTGTTAGTAGAGATTTCTGCCAAACACCTTCTCGTAAAGTTAGGATTACCTTACAAA
ATTCTTGCACCTGACCAACACCTTCTCGTAAACCTTAGGGTTGCTCGTAAAATGACAACA
TCTTATGGTAATGGTGTTAAACTCTTTATGATGCAACCCCCACCCTTAGTTTGCTCGTAA
TCTGATGATAAGACTTACTCTTTACAAGGTATACTCGACCTAATTTAATCACAGAGAACA
AATAACTTGTAGTAAAATCATTGTAATCTAGAAAAAACTATTTAACAACTCAAACCAGAC
ATGAGATTTGATAGTAAAACACTATGTATTTTATAGTAAAGATACTACACTATGATTCAT
TTTTAGGTTGACTTTTGATGGTAATACATTGAGTGCTTAGTGGTAAAAATGACAATACTA
CAAGGAAGAGATTTGATAGTAAACACTATAAAATTTAATTCAAGATTAATTTTTGATGAT
AACACAATAGGTATTCAACAGTAGATTTGGTACTAGGTTCTATTACCGCTCATAATTACT
TGGAGGGGATTTGTATAGGGTTAAAAAAAATTCTATTCATTTACATGGTGTTAAAATATT
GTGTCGGTTCAATATTTTGAAGATCATAAGAATAAGGATATGGTATGCATTGTGTTACTA
TTTGTTTCTTTCAATTTGGGCTCTGGCGTTTAATTTCGTTAGCCGGCTCTGGTGTTTAAT
TTCGTTAGCCTTCCTCCTCCGCTCGTGTCGTCGTCTCCACCACCTCCTAGCCACGTCTCC
GTCTTCCTCTCCCTCTCATTTTGCTATCTCGTTACCTCTCTGCTGCCAACCCAACCCAAC
CCAAGGTATGTCTCCTCGCGACTAACCCCTCTCGAATCCCAGCCAACTAGCGCCCAATCC
ACGGAGAATTGGGTTGATCCTTGTGCTGTGTTTGTTCCCGTTCTCGGATCCTGGACCAGG
ATCCGACCAAGAGCCCAGATCTGCTGGTAGAGTTTCTGCGGGAAATATTGCAAGCCTTTT
CTTATTCAGGCTTTTAGGGGAGTGCAATTTTAGTGGGGTTGACGCGTTGGATACCGCGGG
TGTTGATTGGATCGATCCATCAGTCTATATTGGTCATATGGCCTCTACTGGTCACTTTCT
TCCTCCCTTGTTTCTTTGGACGGTTCCCTTGATGTTGCCATTTCCTGCAGGTTGTTCGTC
GCCAGCATGGATCTGGCGAAGGATGGCGCCGAGATGGAGGAGGGGACATTGGAGATCGGC
ATGGGTAAGCCTTGGCCGTGCCAAGCCGAAGCTTGTTGTTTGTCCATTGCTGTAGAGAAT
TACAGCCAAGATTGTTTAGCTTTCTTGTGTTGCTCCAATGGCCAATGGATAGGTTTGCTA
CGTTAATGCTGTCATATGAAGATAATAGATGCTGGACGATTGACATGCTGCTAGAGTGCA
CTCATTTGATACAACTGAGATGTTTTTTGACCTGATGAAACTGAGATTTTATCAATCTTT
AAAGTAAATATACTGGCAGGAAGTAAAGGTTGTCCTGGTTCGTTTATTCTTGATCCTGAC
AGGAATGTGATGCAACATTTGGTTAATCAGTATCAGCAATATTCTCCTGAACCATTGTCC
AGCAGGACGATAGGTCCTTGCCTTTCTTCGTTGTATCTTTGCTGTTCCCCCATAGTTTCA
CACTAGTTGTACTCACACTCAGTGTCGCCTATCTAGTCCCCCACGGCCCCACCCCCACCC
CCACCCCCGCTGCTTCCTATCTTTCACATTAGTCATTTTAGTGTTTTAGGGAATCATTAG
TCTATGTAGTTACTTCATAAAGGAAACCCATTTGAATGACATAGCCAAGATGATAATGAA
GTTCTCCTTGTCATGCAGAGTATAGGACTGTCTCCGGTGTGGCAGGGCCGTTGGTTATTT
TGGACAAAGTAAAGGTATGATTTGTCATTCTTCTTTATATAGCTATGGCTACTAATGTTG
CTGAAATTATGGCTGGACCAAATAACCATTCTCGTACTCAGTAATTTTTCCCTCTAAACC
TACTTCAGGGCCCAAAGTATCAGGAGATTGTGAACATCCGATTGGGAGATGGCACCACTC
GTCGTGGTCAAGTCCTCGAAGTTGATGGTGAAAAAGCTGTTGTGCAGGTTGCTTCCTTTC
TATGGAGCATATTCTCTTGATTGAAGAATGCCAATTGAGTTTTATACAATGCTGCATTTG
ATCTGATTTTGACATAGTTTGCTTAGGATCCAGTGCATTAAAGTATATTTGGTTGTATGG
TACTTCCCCTTTTTCTGGATACTGAACTGCCTGCCTCTTAAGGTCTTTGAAGGTACTTCC
GGGATAGACAACAAGTATACTACTGTGCAGTTTACAGGCGAGGTACCTGCTATTTACACC
TTTGCTTCTGATTATTTGTCGTTCAATCATTAAACAGTTTAGTTATTTCTGTGCAATAAT
TACGCAGATCATCAAACTGTAGCTATACAATGTCAGCATGAACAACAAATGATATCAGCC
ATCTTAAAGTTGGATTTGGAAACTGAACCCAGACAATGCTAGGCATGAACAATTAGTGAT
ATCAAACGTCTTCCTGCTGAATAACTTTATTTTTTGAATGAGGCTTTCTTGACTCACCCA
ACTTCACCACTTTATTTCTTTGCATATGACACCGTTTTTGTGTTACAGGTTTTGAAAACT
CCTGTCTCACTTGATATGCTTGGCCGCATTTTTAATGGTTCTGGAAAACCTATTGATAAT
GGTCCCCCTATATTGCCCGAGGCTTATTTGGATATTTCTGGTGAGTTATTTTTCATGTTA
TCCTAAACTGTATTGCTCTTATGCTTAGGTTAGAAAAGTGACATGGACACTTGTTAGGAA
AACTGGAGATGAGTTAAATAATCCATTATTTGTGGAAGGCTCTGTCTTAACTTATGGTAA
CCTTATAATATCTGAGAGATGGCTGATATTATCCCAGGAAGTTCTATCAACCCAAGTGAG
AGAACCTATCCAGAAGAGATGATTCAAACAGGAATATCCACCATTGATGTCATGAACTCG
ATTGCTCGAGGGCAAAAAATTCCTCTTTTCTCTGCTGCTGGACTCCCTCATAATGAAATT
GCTGCTCAAATTTGTCGTCAAGCTGGTCTTGTTAAAAGGTTGGAGCAAAGCAAGCACGCA
GCAGAGGTAATGAACATATCATTTATAGAAGGGGTCGTTATGGAGATTAGCCTATCAATG
CATGAAGTCATTCTCAGTTTCCTGAGCATCATGTTCTTTGCACTTAGCTGCATCCTTCAT
AAAATGTGTGGGTAATTATAAATAGGTCTCTTGCTTGTATCATCGACAACTAACATATGG
GTTTACGGACAATCACTTAACTATGCACACAGTCAATCTTATGTTCCTGAGCATCATATT
CTTTGCACCGAGCTTGCAAGTTGCAACCTTCATAAAATATATATGGAGTTATAATAGATC
TCTGTGTTTTGTGTTTTTTCAAGCTTTCTGGCAAGGGAAAGATCTACCGTTTGTGGGTAG
AGTTAGACTTATTACCTGTTGAATAGTTCTCTGGAAATTATACAAAGAACTGCAAAATAA
CATTGCTTGTCTATTAGTTATGGATTGCTCTCATACCGTGTAAAGCAACCATGCTGAAAA
CTTTTGTTTTGTTATTTTGTCTGCAGATTGTTGTTTCTTCTACTCATTCTTGCTATGGTT
TTATTAGGGCGGTGAAGAAGACAATTTTGCAATTGTGTTTGCTGCTATGGGAGTAAACAT
GGAAACGGCACAATTTTTCAAGCGTGACTTCGAAGAAAATGGTTCGATGGAGCGGGTCAC
CCTTTTCCTGAATTTGGTAAATTTTTATCTTGCTATTTGTTTGGCGACTGCTTGTTATGA
CAATGCGAAAATCAGATCTTTGAGGTTGTATGTGTGTTTAATATATTTGACCTGAGCAAA
ACTAAGAAAGCACATACCATGAAACCTGAAACCCTTGTTTTGATCATTTTGCAGGCAAAT
GACCCCACTATTGAGCGTATTATCACTCCTCGAATTGCCCTAACAACTGCTGAATATTTG
GCATATGAATGTGGGAAGCATGTTCTTGTCATTCTGACAGATATGAGCTCATACGCCGAT
GCACTTCGCGAGGTACCGTGTTTTCTCTATGATTTTGTCATCTCTTCTCATATTCTGTGA
GTTCTTATCTGTTCAGTTATTTACTCTTTGAGTAGAATGACTTTTGAGAACAGTGCCATC
CTTCATCTTCTGTATATGGTTAAGGACTCACTATTTTGATTTTCTTAATTACATGTGAAT
TTATTTATGTTTAGGTCTCCGCAGCACGAGAAGAGGTGCCTGGTAGGCGTGGTTATCCTG
GGTATATGTATACTGATCTGGCCACCATATATGAGCGAGCTGGACGTATCGAGGGAAGAA
AGGGGTCAATTACCCAAATTCCTATCCTTACAATGCCTAATGATGGTAAGCAATGGACCA
GTTGCACTGCTAGAGTTATTATCTTTTAATCCTACATTATTTCCGTTGTAGGGAGCCTCT
TTTTTGCAGTTGCATTTTTCAGCTCACTTTTTGTGCTATGTTGCACCCTATCCATTAGAA
GTTCACTTAACTAAAAATCTAAGTATCTGCTGCCTCAGAAGATGTTAGCCTTGATGGGCA
GGTGGTGCCTCAGAAGGACACCTTTTGATATTTGGGGTTAATGTTGCAGAAGGATGGGGA
TATCGATGAAGATGTGAACCATCGAATTA