morexGenes - Barley RNA-seq Database

Contig contig_1568966
Source Contig contig_1568966
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1568966 (6320 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1568966

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14771	1	2336 bp	None	Available	Available	LOC_Os07g48890.1, FRAME:+1, EVALUE:8e-21, 13107.m05248 protein expressed protein
MLOC_14772	3	4613 bp	AK375603	Available	Available	None
CDS Structure of MLOC_14771

CDS Structure of MLOC_14772

Contig Sequence (6320 bp)

>contig_1568966 6320 assembly3_WGSMorex_rbca.fasta
TATCATGATATGATACGCAACCCTCTCTTTCTTCATTTAATTCTATGTCACCTCATTAAA
ATTGTTTAGTTGACATGCATGATACTACCTATGATACTTCCATTACGGGCAGCCTAATAT
GACAGAAGGCGCCTTATGTGGTTATGTTTTGACCAAGGTCAGTAAGTAAGATAACTTCAA
ATACTTGACTGTATTTTACCTTCTTTTTTTCTATGCGCATAGCTAATTGATACTCATATG
AGGTTTTAGTTCACAATATCATTTCAGTGAGTAGCTCATTGGTACTCATCTGAAGTTTTA
ATTCACAATATCATTTTAGTGGGTATACATTTTCCCCTTGTCTGTCTTCTTAACAAAATT
GTACATAATGCAACTCAGCTTGACACAAAGACACCTCCCTCATTTTTTTAAACGGAACAG
CTACCTCATTTTGAAGGTTTGTTTGCTGCAGTCGTATTATTTTTCCTCCATACTCTTGCA
GTTCAACTATTCATATACTACATGGGTGTGAAAGTGAAAATATAAATGGTTTTAACTTGT
GCTCTGTAGCTGGAAAATAGCGGCATTGAGTGTGACCCCAATTCATCACAGGAAGTTGAT
CATACAGTCATCAAACCCAACATTGTATATCACTGGGGCCTCATACCTCAATCAAATACT
CAACTTTATCCTAGCTCTAAGAAAGATTTCATGAAATATATCATCAATGATGTCTTACGG
AAAGATGAAATGTACAGACTCAGAGCTGACAATGTCCATCGTTGGCGCATCAGAGCTGCC
AAAAAGCATGTACAATGACTCTTCCTGGGCTTACTTGCAAAAGTGCAACAACGGCCGGCT
CAGCCAGCATGACAACACTTGTCACGTTATCATTGGCTTTGGACTAAATTGTTCCATAGG
CTGCAAGTTGTGGGATGGTGAAGTAAGGTTTTTGCAAGTTTTGGACTAGATCATTACATT
CCCAACAAGTTGTACGACTTGGAATGCTGATACCTCTTATTATACGGTTACCATTGGTTT
ATAGAGATCGGATTCTAATTCTATATATCTGACCTAACCAAACAACGCCTAAAGACTAAG
AAGCGTGATGTCATTGCTAGTCTTATTTTAAAAGAAATATATAGGACCAAAAGCGTCCAA
AAAATATTTGGTACATCCTTTTAGCACCTTTTTCTTTGATGCGTTGCCGCCTCTTCCTGG
GCTTCACATGTAATGTTTGCCTCCTTGCTGATCAATGAATTTGGTAGATCTCTTACCAAC
ATTCAAACAAAAAAAATTCAAGTCTTCCTCGTCGGAGCACATGCTGGAATTCAGATTCAC
ATCGTCGCACTCCAGGCTGATGATCTTACGCTCCTAGCCTCTCGCCTGGAGACCTTGAAC
AAGCATCATTTAATGGCTACAAGAGCGTCATTTTCTTCTCTTCTTTTTTCTGTAAGAACG
GCACAAGTTTCTTCATAGGAAACTGGGAGAAAAATCATTTTCCGAACAAAAAAATAATAA
TCAGCATTTGACTCTTGTATATGCGCGATTTGTGCCAACGCTTGCTTGTAGTCCTGCTCT
TTCATTCAATTTTGTGCGATTAGTGCCGACAAGAAGTACTATCTCAGCACCAACATCATC
CTCAACCCAATCTTCTACTCCCTCTGTACCTAAATACTTGTCGTTGGGGAAAACCAATAC
AAGTTCCCCTAGCAACAAGTATTGTGGTAGAGAGGGAGTATATCCAAATAGCTAGTCCCC
ATTAACCTATTTATCTCAACATGCAAGCATGACACCTCATCAAGCAACATGCATTAGAGA
AGTCCCACCTCAACATTCAATGAGTCATAGGAAAAGGTCGACCTCATCAACATGCAAGCA
TGCATGACATATCTAATAAATATTTTACAGAAATACAACTCATACTATTCCTCCAAATAT
CAAATATCTTTGAAATAGATTGCAAAATATTCCCGCAACAACGTGCGGGGTATCATCTAG
TCTCCCTAATGTTGCGTATATCCAAAGCCATCTGATGTTATATACTTTGCTTCAGTTCTA
TGTAGAGAATACAATTTTTTTATGCTGCATACATCTAACCATTTTTTATGCATAAATTGT
GTTTCTGTTTCACATGGCATCACACGATTTCTTTGCTGTAATCTTTGTGATGACACGTGT
ATAGCTTAGTTCAATTTGTGATGTCGTGTGATAGATAATTTAGGCTTCTGTTGATTTTCT
TGAGAAAGTGGAGCTAGAGACTTCGTTAAAATTGGAGTATCACTCCATAGGTTGAGTTAC
CAACCACGAAAAGAGGTGACCAGAGACAATTTGATGCAGGTTTACAGGTAACCGAACAAG
ATGCAATTGTATGTGCCCAGCCCCACCAGAGTCCGATGCAGACAACTAAAAGGACCCAAG
CCGACCAGGGTAGAAAAACGGTGCAGACAACTATACATGAGATAGATGTATCCCAGGCTT
GGCTAGGGAATCGATGTAGGCAGCAAACATGTCCTAGATGTACCCAGCGACTATGAACAC
TATTTGTGTTATAGCATATATTCTAGAGATTTGATTCATTTATAAATAAGTAAATTGAGA
CTTCCTTATGTCTAAGTCGATTATGAAAAGTACAGTTCAGAAAAAATTTACTTACACTTC
TATTCAAAATTTCACTTTTTTTTTAAAAAAGCGCACGTTACACTTTTCACTAAACAGAAA
TTGCACTTTTCAGAAATCGACCTAGTTACAAAAAAATCTCATGCGACTAAGAATCAACAA
AACCCCTAGAAAATGTCAGACTGCCCACTACCAACTATTTATAGACCAACCTTGTACAAC
TTCAAGAGTCAAATAAACACACACATAAGTCAGATACGGCCTTTTGGCATGGACTTGGTC
CAACAAAGCCTTGCGTAGTTATTAGATTCTCAACTGTTGAATATTAGTTGTGGACTGGTA
TTTTTTAATATACAATTATAAATTGGCCTCAGCAAGCTAATGAAAAATCGGAAGCTGCTC
AGGCTTGGCTCTTTAACGTAAAGAGTTGAAAAGGTTGCTCGGCTCTGGCTCTATACTTTC
GTGATCCGAACTATAAGCAAGTGAGCCTGAGTCGCTTGCTAGTTCTTTTAACGCATGCAT
AGTTCAATCTACTCGTCATGTAAGGGTCTAAGGGTCTCTCTGGATTATATGATTCTCACA
ATATCTGGATGCAAAGGTTTTGGGTGCACAAAAAGGCAGGAAAGAGAATTAAATAGATAA
TGTGTACCAAGCTACCAATGGGCGCGAGAAAAGAATGACAAACAAGATTTCAGGGACTCC
TGCTAAATACATTGGTGGTAAACTAAGACCACCAATCGGAAGGAAATCAAAGAAGATTTC
AGAACATTCTTTCCATAAATTCTGTGTATCAAATCTCCCTATACTCCTAGTAAACCACAA
AATGAGTGTATGTCATCTTTTACAAGGCTTGTGTATATTGCAGGCATTGCACTCATGTGG
AAATGTTATGTTGGAGGAGGGAATAAAGGTCAAGTACCATCTCTTGATTTTCGCAAAAAA
AAAAGTACCATCTCTTGATAGTTGATACAAACATCAACGTTTATCTGTCCAAGATATGGT
TGCTTCTGACTTAGTCTAAAGAATATGATAAGAGTCACAAATCAATACTGTTTGTCACTT
CTTACAGCCAGAATTGTAGTACACACAACTACATGAGGCTAGCCATCAAACTAGTTTCAG
AAAGGAATTTATTGCTTGCAACAGCTAGAATGAATCAGCACACATATGTGTGAAAGCCCG
ACACTAAAACTATGGAGAAAACGCCTAAAGAAGTATGTTTATCTTGAACAACAGATAACC
TACCTTCTTGGCATCGGGCAGTATGCGCGCTCACACAGTCAGGTCAGTCAAAGAAAACAC
TGTTTCGCTAGATATCCAACACCCTCAAACCCTGCAAAGCAGAGATAAAATAAAAGAACT
ATTTTACTTATCATTTGTGTTTGCGCCATCCATATTCAACCCATAACATTTATCGAAAAC
CAACAGTACAGATTCCACACAGTATACCACAATAATAACTCTTTTTAACCATGAGAAATT
CCAAGCACAACTCAAAAATTGCCTCTGACACAATACGACTAAAAGTCACTGCTAGCTTTG
TTTCTTGTTGCAAGTATTTGGATAATTAATACAGTCTCCCTCCACGCACAATCTGATGAC
CAACAATCTCATAGCTTCGTGTTGTGTTTGGCATCTATATTCTATCATTGATTAGTAGCG
TAAAGCATGAGCAGACCTTATCTTACTTCTAGAGAAACACTTGCAGCATCCTACTACTAC
AGAATCCTAGTAACTATATACCACATTACAACGAGATAATGGATAGGGATCGGCATACCT
TTGCAGTTTGACCCTTCGTAAGTACAAATAGAGCATGCAGTTAACAAAGAGCTAACACAC
AAGCTCAGATATGCACAAAGCCACAAAAAATATAGCAAACTCCATGGACAGGTTCAGAAT
ACATACCAACAATCAAGTGTCCCTGAGATATCAGACTGATCATAACACCACCAGAGGAGT
ATCAAGTATGAACTGCTACGCACGAGGGTTGCACCGAACTTCTGTATCCAAGCCTCAAGA
TGCACTATGCCATCGCAGAACTCAATGGCAATCATAATCTTATTTCTCGTCGCAAGCGTC
TATATTTCTCTTGCATTCTCAATAGATCTCTAGAAATCTGCTGATTCCCTGTCAACATCA
ACCCATTCAGAACACGGTTGAGCATGAACCTTCTAGGCAAGTAACCTCTCTCCACCATCT
CCATCACCATCCTCGCCGCCGTTGCCATGTCCTCAGCCCTCTTGCGCACAAACATTGCAC
TTATTATGATATTGTATGTATCTTGGTTAGGCAGGCAGTCCTCTCCTTTACTCATCCTCT
CAAACAAACACAAGGCCTTCTCGATCTCCCCTTCCTCAAATGAATATCTTATAAGAACAT
TGTATGTCTGAACAACTGGCTCACAGCCTTCGCCTTTCATTCTCTCCATTAGCTTCATAG
CTCGGTCAATTTTCCCAACATGGCAGAGGCCTCGGATCAAGACCGTATAGGTAACCACAT
TTGGCATATAATCCTTCCGAACCATATCATCAAACACTGTGACTGCATCCTCCACATTTC
CCTTCTTACATATCACCTGGATAAGCGCATTGTAAGTTGCCACTGACGGCGTGCAACCTT
CTTTAGACATTTCATCGAACAGTTTGCGAGCTTTGTCTAGCTGCCCAGCAACACCCAGCC
CATGAATGATGGTAGTGTACGATACGATGTCCGGCTTACAGCTCTCGTCCTTGGCCCCCC
TCTTCTTCATTTGGAGGAAGAAGTTCCACGCGTGCTGTATCTGCCCAGCACGGAAGAAGC
CTTTGAGGATGATATTATAGGTTGTCTTCGTGGGTGTGACGCCGGACTCGGCCATCTGCC
GCAGCAAGTCGAGCGCGCGGGACGTGTCCTTGGCGCGGCACCATCCGTCGGCGAGAGTGT
TGTACGTGACGACGTCCGGGGGGAAGCGCCGCTCGAGAGCGCGGACGAGGGAGGCGGCCT
TGCTGGCATGGCGCGACTTCCCGAGCGCGTCGAGGAGGGAGTTGAAGAGGGGGAGGTCCT
GCACGACGCGGTGGGAGCGGTGGAGCGAGAGGAAGAGGCGGACGGCGATGTCGGGTCGGC
GCTGCGACGCGGCGAAGCGCTCGAAGAGGATGGGAAAAGTGCGCGGGGTGAAGGGCAGGC
GGAGGCGCGGGAAGAGCGCGAGGATGGAGTTGGTGAGCTGGCGGGGGTGGCGGAGGCGCG
CGGAGAGGTCGAGCGCGAGGTCGATGGTGCAGGGGGAGACGGCGTGCGCGCGGGCGGGGA
GGTGGAGGAGCGAGTGGAAGAAGAGGAGCGCGCGCGGCGCGTGGTGCCAGAGGAGCTTGA
GGACGCGGTTGGCCACCGGCGTCGGGAGCGCCGGGGCGACGGCGAGGAGGGACGCCGAGA
GGGAGCGAGCCGATGCGGTGGTGAGGTTGGACGACGGGTGGTTAAGCACGAGGGCGGCGA
TCTGGCGCGGGGACGGGGATGATGCGGTTGAAGGCGAGAACGAGGTCGGCGGCGGCTGCG
GCATTTTGGGGAACTTCGGGCGCGGGGGTGTGAGAAGAGAGGATCAGTTTTTTTTTTAAG
CAGAGAAGAGAGGATCAGTCAGGACTTAGGGGCTGTTTGGTTTCCAGCCTAAGGTTGCCA
CGCTTAACCTTAGTTATGCCATAATACCTTAAGCATGTGTTTGGTTCATTGCCACACTTG
TGGTTTGCCACACTTTTCTA