morexGenes - Barley RNA-seq Database

Contig contig_1568532

Source Contig contig_1568532

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1568532 (5874 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1568532

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14629	2	1600 bp	MLOC_14629.1	Available	Available	LOC_Os11g04370.1, FRAME:+1, EVALUE:1e-99, 13111.m00388 protein ribosomal protein L24, putative, expressed

CDS Structure of MLOC_14629

Contig Sequence (5874 bp)

>contig_1568532 5874 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGGTACACTGCAGCGGGATATGCTAGGATGTCCATTATCGCAA
GTAAAGCGAGTGGCCATACAGATTGGATAAAGCAATCGACGCAAAAGGACACGTCCTTTT
CGCCCAGGTTCATGCCACTAGGGCGTCTGCCCAAGCTGGACAAACACAAGCAGAGAAATC
GAAGCAGCAAGCCCACGCCTTTTACCAGTTGAACCAACCGCAACAAGGGGATTTCACGAG
GTATTCCTATAGACAGTCGTCGGCGACTTGGCGCCTCTGCCGCAGCAGAGAACCGAAATC
GCGACCGAATCGGAGGCCGGGACAAGCTAGCGCGACGGGGCTTACGAGAGATGGCGCATG
GGAAGAAAGTGGCCGCGAGGAACCGGAGAAATAGACAGATCTCTTGGCGAGTTTACCTCC
TATATCGGTGAACGGAATCTGGCAGGGGGTGGAGCCGCCGGCGAAGGGTGGGTGGGGGAG
GTCAGCTTAGCCCTAGCTAGAGGAGGAGGAGGAAGAAGAGCAGGGCGAGGTGGCGGCTCA
TTTAGAGAGGAACTTGCAGTCTGGCCCTCACTCTTTTCCGTCATCACACTCTCATCCCTG
AGATCTCGCGAACCGTCCGATCCTGCGCTGACTGGGCCAGCACCGTTGATCTGCCTGCCT
CCGGACCGGAGAGCCACGGGCCTGCGGCCTAGCTGCGTGGGTCATGCCAGTTTCTGCCGG
CCCGTTTTGAGGCCCATCCTAGGTGGTTTTCTTCCTCCGGCCGCCCTCTCCCGCGAGCGC
CGCCGTCTCTCTCCATCCACTCTCGCTCCCCTCCCCTCCCAGCCTAATCGAGCCAAGCCA
AGCCAAGCCGCAGCCTGAGCTGAGAGGCAGGAATGGGGTGGAAGGCCGCGGAGAAGCTCA
TCAGGCACTGGAAGATCCTCCGCGGCGACAACGTACGCGACATCTCGAGAGATCCTCCTC
TTGCTGCTCTCCTTGCTCTCGAGAGATCTCCTGAAATCTCCTTTTCTCTCTCTCTCTGAA
TTTGGCGCCAGGTGATGATCATAAGGGGCAAGGACAAGGGGGAGAGCGGGCTGATCAAGC
GGGTCATCCGCTCGCAGAATCGCGTCATCGTCGAGGGAAAGAATCTGGTAATAGTATAAT
CGTCTGCACAGCTATCCACTCTTCCTTCCTCCTCTCGCGATTGCTTCGGATTCAGTGCTA
CTCTTTGGTGTCATGGGAGTGTCAATTTGCGTATCTTTGACAAGCTGTATGCAATGTGAT
GATACGTGCTCTGGGTGCTGCACGCACTACAGGTGTTTGTCGAAATTCCCACTGCACTCA
AAGTGAATGGGGAACTTGTCTGTCTTAATTCCGCACGCTAATTCTTCAGGGCTAAGGCTA
GTGTTGTAGCTGCTATGCTGCGCCTGCACAGATGTTATTTGGTGATTACTGCAGCAGAGG
ATTTTTGTTTCCCTTCAATTTTTATGAATGATGAGATAAAACTATACTGCCCACAAAATA
TAATTATAATATCTGTATTAATATAAGTCTGTAATAAATAGTAAATGAGAATCTAACTCT
TCCCATCGCATACTGTGCATCCATAACGACATAAGAATACCAGAAGTACAAAATGAGCAC
ATATTACTCGTAGGATGTTTGCCTAAGTGCATCATCATATGTATGATGGAGATCGGCTTT
ATGGTCAAATCTTGGACAAGTCAGGCAATACAAGTGTCACCTAAGGCGTGTTTGAAAGCC
TGGAGGTTAGGCCTAATTCATTAAAATGGTAGGGAAAGGGGACCAAAACAACCCCGGCAA
GATCTGTTGCAATATTGTCTGTGCCTATCTACCTTTGAGTGGTTAGCATATACAGTACCA
TATATTTTCCTTTCCTGGGCATGTTGGTGTCTACCAAGTCGTTGCAGTGCTATACGTACT
TATGCTACAATGTTCCTCACCTCGTCACATGCTTTACTTTTAGTTAATTGTCAATGACGA
TGAGATACCATAAAAAACTGACAATAAGTTCGTGCGATGTTTTGCTGGATTTTTACATGT
CCTAAACCCATAACAAACAAATGCTGAATGCCTCAGTTAGATAAATGCAGATTAATTTGA
ATATGGTGAGGAAGTGGCTGTAGTGAATATTGAACAGGAATTGTGAACTGCACAATGTTT
GTCTTTCTAAATCTTTGTATATATACTGTAAGATGTTGCATGTTTATGGGGGATACTGGG
TAACTGGACAACTGCAACCAACAAACTTAGTAATTGTGGATACTGGGTACTTAGTTGCAT
GTTTATGTGTTTCTCTTGCATTGAAAAGTCACTTAGTAATTGTGTGCTCACATATTTTCA
GGTTAAGAAACATATTAAGCAAGGAGAAGGGCATATAGGCGGGATCTTCTCAGTTGAAGC
TCCACTTCATGTTTCAAATGTACAAGTAATTGATCCAGTCACCGGGTAGGATACTTATCT
TTTGATACCGTTATTTTCTAGAGATACATCTTTTATTTGTCTACATTCTAAAATATCTAT
TTGTCTGCAGGAAGCCATGCAAGACTACATACAAGTATTTGGAAGATGGGACTAAAGTAA
GGGTCTCTAGGGGAATGTATGCGTCTGGTGCTGTCATACCTCGGCCAGAAATTTTGAAGG
AGAGAAAAAAGCCGAGACCCACATCTCGTATGTTCATGTTCCATAACCAGATCCTTTTTG
CTCATTATTAGTTGCTTTTGAAGTGCATGATTATACTGTTTAGAGAAGAATTAACTGACT
TGTTATACTGCAATTGTTTGTGGACATCTGAATTCTTCATGATGCCAATCTCCACTTAAT
ACGACTTTTTTTTTCATAATTTCGTCTCGTGTTGCTGGAATTTTCTTGTTCTGGAAGACT
ATGTTTTATGTTCCGGATCTGCGATAGTCTACTGTAGGTGCTTCTGCTAATGATGTTTGA
CTTGTTTGCTGCATTCTATATTTTATAAAGACTTTGACAGGCATGATAAAATTAGTTCAA
CAATAGTAAAGAGTGCAGAATAAATTGTGATGTTTCATGCTGTTCGTTGACAACGGTTGG
AGAAAAAGAACAAGTCGGTTTTGTGAATAACAAACGAAATGCCGTAGAAATTTCCTGTAC
TTTTGTGTGGGGAGTACCTACCCACTAGTTGGCATGCGATGTATTGCATTGCTATATGAG
CATCTGCTCATGAATACACGTCTATTTTGTAATTGGACTAATTTTCTTTGACTGATGCAG
ATGGCCCAAAGGATACACCAATTGAGGATGTGCTGGAGAAGACCTATGATGCCAAAGCTG
GAATTGGTATGCCTGATCTATGAGAGGAGACGTCCACCATTGCTGAGAGTGAAAGAAAAA
GAATTGGGCATATATGTGATCTATCCGTCCTAGCTAAAAGATAGTTTATTATGTCAGCTG
TTCACGAATAAAACTAGCATCCGTGTTGTCTTTGCCAGCATCTCATGTGTTTCCAGAAAT
CTGTCCCTCAAGACCCTAAATGTTTGTCCCTGAACGGTAGATTCTACCACGGAAGTCCAT
GAATGCTGGCAAATAGAATTGTTTGATTGTACGAGAGAAACCCCCAAAAAGTACTGTGTG
AGCCAGGCTGCTAGTTTATCAAGATCAGATATTGAGTTTTACTGTAATTTCTTTGTTTTC
CAGCATGGTCCCTGAAGTTAACTGAATATGTGAGCGCAAAAACAAAAAAGAAAAAGAAAA
TAAAGTTGTTCATATATACTTCATCTGTTTCTAAATATAAGACATTTTAGAGATTTCACT
ATAAACTACATATGGACAAGACGTGTTTTAAAGCATAGATTTACTCATTCTTTTTGAACG
TAGTCTATAGAAAAATATCTAAAATGCCTTTATATTTAGGAAGGGAGGGAGTATGTCGTG
CCACCCAACCACCCACTCTCCAGCTTATATATTAGCAAGCTAGGAGCCACGACACTGTGT
CTATTACAGTACAGTACAAGCTTCAGTCTCAGACTGCAGTTAGAGTGAAGAGTCTACCAT
TACCAACCAAAGGAAGCTACTCATCACAGGACAGGAGGGAAGCCTTCTTGTTCATCTCAG
CTCTTCCAACCGTCTCCATCACCACAAGGTGCTCATGTCCTCCTCCTCATCGCCATCTTC
TTGGATGGCCTTGCCTTCTGCGTCTTCCGTCTCCTCTGGCGCTATTTCAATCACGTCATC
CAAGAACCTCATGAAGTCCTCGTCCTCCTCCTCGTCGCCATCTTTTTGGATGATCTTGCC
GCCTACGCCTTCCGTCTTCTCTGGCAACACCTTGTCGTCCGTGTAGTCATTGCAGGCCTT
TTGTTGGATCGTCCTCTTGTGGACTCCTTGCTGGATCGTGGTCTGGCTCTGGCCCTCTGC
CATTGATCCAAGATCGGCCGCCTTGTCCTTGGTCGCCTGGCGCTGAGGCAGCGGCGCCGG
CAAGAAGTTCGGCTGCTGCGGAGGACACCAGGACGGTCGCTTTGCCGGCTCCCACGACAG
GATGGACGCCGGCTTCACCGCGGGACGTGTGTGAGCCGGAGCGAGAGCAGCAGCACGCAT
CCTCTTGGGGTGCGGCGGCTCGGCGATGGGAGGGGCTGGCCTCTTGGGCGCCTGCTGCTG
CGTGGTGACGGGCGGAGGGACCGTGACGCGACGTTGCTGTTGCCCCGACGAAAGATCAAG
GAAGCGCGGCGTCGCTGGCTTCTCGATCACTTGCTGCGGTCGTGCTTGTGGACGCGGTGG
CGCGGCCATGATCATGATGCCGGGTTCTTGAACTCTGTCTCTGATGCGATGGTCTCCTGT
TGCAGTCGCAGAGGACCACATTGGTGCAGGAGGCTTCTTCATCCCGGCCGGCGCCTGGGT
GGTCGCGGGAACCTGTTCCTGTGGACGGCGCGGCTGCTGCGGCACGGCGACGGCCATGGC
GGATCTTTGAGTTCCACGGACAAGCAGGTGATCCGCTGCAGCAGATTGTTGAAGCGCGAC
GGATCCCGGCTTGACGCTGGGAGAGACGTAGAGCCTGCACAGGATGCGCTCCTCCTTGCC
GTCATCGAGGAGGGCGTATTGGTCGAATCCGCGGCAGTGGTACTCGTCCATGAGCCACTC
GGACTTGCCGCTCTGGCCCTTGTACGCGTAGCGAAGCTTCTCGTGGTACCCGATCGTCTC
GCCGGCGCTGTTCTTGACCTCCGTCTTGGTACTCGTGACCCAGCTACCGGCGCCGGCGGT
GCGCTTCATCCTGAAGCCCGTCCCGGCTTTCTGCCGCCTGCAGGTGGTGAAGAAGAACCG
GTGGTGGGTGTTGGGAAGGCGGGGCCACGCGGCGGCGAGATCCTTTGGCTCCGACTTGTA
AACCTCGGCGTGATGGATGATTCCGGCGGTGTCAGGCAGCGGCTGGCCGAGGAGCCATGG
CACCAGGTACGCAGCAATCGCCTGCTCCTCCGTCGGGTTGAAGCGCATACCCAAGCTTAG
CGCATGGTAGGGGTCCGTCATTGTTCCTCAGGTTTCGCCGGCTGCTGGGCGATCAGCGAT
TTGGAGCAAGGAAAGGAAGCTAGGTCAGCGGGCCATGCGTATGGGAAGGCGGATGTTGGC
TACCTATATATACTACTGTAGTATGGGAGTGAGTACGTGGTGTATATGGAAACAAACTAC
TCCATCCTTCATGATGCGATGATTCCGATCCCGACACAAACGCGGTACTATTGACAAACG
AAAAAAATGTGTGATGCCACCCGAGTGTCCCGGACTCGCCGTACCCTTTTATCTTTTTTT
TAGGGAGTGATATGCGCCGGCCCAAACTTTCGGCCTGGCCGCGCGCGGGCCGCAGGATCT
ACCAACCCCGCGTGTCCGCACCGTTGGATCCGCATGCAACATTTTTCCTCCTAT