Map Locations of contig_1568443 (9645 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1568443

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_14584 2 3673 bp AK374613 Available Available None





CDS Structure of MLOC_14584






Contig Sequence (9645 bp)

>contig_1568443 9645 assembly3_WGSMorex_rbca.fasta
CACACATGTATCTCAGTTTCCAATCAATACAATTATANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTATTGCCTCTAGGGCATCTTTCTAATAG
CAGCGGCGTTTGCGGATGTCGTTTCCTTCTTGGAGGCGCTGTCAAGACCCTCGGTTGCGC
CCCTCTTCGAGCTCAGGGGAATCGCTAGGTCTGGTTACTCCGGACCGGATGACGAGAGCG
TCCCGGCGTGTCCTCCTTCCTGAAGGTGATATCTTGTTCGCTCGTGGTGTTCCCTGTTTT
GGTTTTGGAGATGTTGGTCCTCTTGTTCATTCGGCATTGTCGTCCTTGGGTCGTGCATGG
TAGGTTTAGCTGTGTTTTTTTATTGGGCCGAGCATCCCTCGTCTCTCTGCTCCGGGCACC
ATTTTCACGCGTATCTCCGTTCGTGTCATGTTGTACCCCTATCTATACTCGTTCTATTCC
TTCTATCAATGCAATGATACACAAGCTTTGCGTATTCGTGAAAAAAAAAATGATAAATTC
CAAATGTTTGGATTTTAAACATGGCAACCCAAACGTTTTTGTGGCAAGTTTAGTTTACGC
GAGGTTGCAAACATGATAATTTTCTCACAAAAAATAATATGAGCCAAAATTACCATGTAT
AACTAAAATTGTCATCTCGTATCAATTCAAGTTGCATGACAAAATATTCAGGATGACATG
CTCAAAATCCGAACATTCTGAAATTATCCGGTGTTGTTTTGATGACGTGCTTAGTGATCA
AAGCTAACTTATATACTACCCTCAAAAAAGAAAAGGCTAACTTATATACCATGAGATGTT
TTCCTCTTGCTCCTTCCTAAGAGTCCTACGCTAGGCTATCCCCGCCACCCATCAGGGTCA
TCACCGATCTGCCTCGTCTTATGCGGCCTTAGAGTCATAGAGGGGCAGTGAATCCCGGGC
CTTGTCGGTGGGAGGGCTCCTGCCCCGTTTTTAGGTGTTTTATAGGATCTAGAAATGGAA
TAAGGTTCTCCATGTTTAGCCCTCCTCTCGGCGATGTGTCTAGCATCGTCGGATGGCGGT
GGAGGTGTGTCCCCGACAAATTTCACGTGATTTGATCGTCGGTGGATCTGTTCTTTGTTC
TTTTGCGTTTCTATGTCTATAGGTTGGATCCTTGCAATCTATGTTTCTCTTCACTAATGA
CGGTTGTCGTTCTTGGTGTGTTGCTCTCTTGGGGCTTTAGTACAATGATTTTTTGACTGT
CTAATACAATAAGGTTTACCCTGCTACGGTGAGGTAGGGTCGATGACGATAGCGCGCCTT
CGGCTCGTGCCATTGCTTGCGGTCGTCGCTATATGACGGATGTGTGTTTTTATTGCTTCT
GATGTTCTTTATACTGCCATGATATTTGATAAATAAATCAAAAGTTTTTTTAAGCTCATA
TACCTGGATGCTCTTAGCTTTTTGTAATATTGAATTAACCAGACATTCTATATTACTACT
GCAAACAGATATAACTGTCTTAAAGATTAACTCATACCACGTCATGCAGAAATTTCCGCC
CGTAGGGAATTTTCCGTTAGGTTAAGCATCATCGTGCCTACACCCCACCTAAAAATGGTG
GTATTACATACCAGAAATTTTTGGAGAAAAAATGCAGATCAATCACTAGCCAGAGGTCAT
GAACATGGGGAGAATATGATTTCTTCGTTTAGAATCTGTAGCTAGTTACAGCAGTTGACC
TCTGAGTATGTGGCAAACTGTTACATCAGGCAACAATGACATATACTACATGGCAGCAGC
AAATATGGGTTGGCTATGTAGATTGCAAGGCCAACAAAACATCAGAGCTACAAGACTACA
ATAGAGACAAAAAAGTATGAATTGTTCCTTATATTCATGTTCACTCGGCCTTGGAATTTC
AGAGCCTAAATCATCGTCAACTATCATCACCAGCATCCGTTTTCATGGGACTGGCCGACA
AAAATATTGGTCCAGCAGCGCCTGGAACTACATTGGTCATTCAAACATGTGATCTCAGTT
ACCAAGGTTGACCCCCATCTGAGCTGCTGCAAGCTTGGTTGGGTAGAAAGCCGTCGCCAA
AGTCACCAACCAATCTCATTTGCATTTCTTCCTGTGGAGAAAGAATCCTGATGCACCGTA
CACAGTTCAGAAAATCCCTGCACAGGCAGTTCTTCATTTATCAGAGTGGCTCAATAGCCA
GATTAACAGAGTAAATGAATGGGCATTAAAATTGAAGCCAAAGTGACCCTTTTTGTAGTC
AATCGGGTGAAATCAGTGCAGTAGAATGTGTTAATTGACTTTAGGGTTTCTTTGATTTTT
CTTTCAAGTACATATTCAATTGAAGTTAGGAACTGTCCTAGGCCTTTCATTGTGCTCGTC
AAGCTAATTTGGCAACCAACGAATGAAGCGTTAGTTGATATCTACCCATTTCCCAAGGTC
ATGTCCACACAAATTGCAAAGCCACCCATCAGGTTTATCTCTTAGTAGTTTTTTCACATT
TCCAGAAAATCGTGCTAGTAAGTTTCGTATTAAAAAATGATAACAAGCTCATGGAGTTTT
ACTTACTCCCATGGGTCATCACCAACTAGTAGAACATCCTTTTCATGATCTTCATATACT
AGTTTCCAGCCAACTCTACTTTGGTCACCAAGCTGCCCTTCGATACCAAACATCCGAGCA
ATGTCATGCTTCAGTTCATCATACCCTGAATAACGGTTCATGTCGATAGATCTCCCTACA
GCACCACGTTTGTGCACCTGCAGATAGTACTTTGGTCAGGAAAGATCTTACTGCAAGAGT
GAGACAGTGCACTCGTATTTAAAGTTTTAAACATAAACAATGCTAGAAAGTATTAACACA
GAAATAAATATGATAAGAACCTAAGGATAAACTCTTCTAACACTAACAACTTTGAACATT
GACTTTCTGTGCACAGTAAAGTGAACACATAAAATTTCAGGTCATCATTTTGCACGGGAA
TTAGTCTGAGGAAATTCTATATAGGTAGGAAGATCTCGAGTTAAATATGTAACTACTTAC
ATTCTACAAGGTGAAATAGTTCATTTCTTATCTATAACAAAGTATTCCTGTGGTGTGCAA
CAGCTTATGACTACGGCGTCATGAGGCTGGAGTTGATAGCCAGGGGATTTACGACCCATT
TGGGTGGTGGCTATCGTGTAACGGAGTATGTGACTTTTTTTTATCTCTTGTTTATCTATG
TGGCTTGCCATTCATCCGTTGGCCTGGACTTTATAAGAAAGCTATGGCTGTGTGCATCAG
TTGATGTAGAGGCCAGTGGGGCGATCTATTCCATTATCTCGGAAAAATCCTGGTGTGAAC
TGTAAAATGACACACTGGAGCAAAAATAACAAACCTTGGTGTAGGTTCGCATGCGTTGAT
GTGCAGGAGCCGGTGCCCTGGAATTTCTATTTAAGAATGGGGGATCATTGGTTGCAGAAT
CTATAGAATTGAATCCCATGTCAGCAACTCCAAGTGAATGTGAAATCATTGAAGATGATA
ACTCTTGTTGAGAATCCTTTGATGAAATGTAGTTAGAAATGCCATTTCCAGCCATCTCAT
CCATGAATTTATCATTTTCAATGCTATTTGCAAGCAAGGCATCTGCATTAAGTGGTAGGC
CCAGTTGACCATCAATGTTCACCCCAAACAGAAGGTTATTTGTTGGATCTGAAATCTCAA
ACTCACTGTCTGGAGCTGTGTCCCTCAACAGCTGATGCTGATCGAAGGATGAAGATGGAA
AGTTTTGTTGCAATGATCCATCAGCCTGAGAAAGGCAAACCGAAGTAGCTGAGGAGGACG
TATCCAAGTAATCCATGTGGGGGTTGTTTATGTAGTCTCGTTCAGTAGCTGGCCCTTGTT
CAATCATCTTGGGAATCATTATTGTTGGCTTCACACTCTGGTAATGTTTCATTTCCTGTT
CAATTGTGGAGCCCAAGCCAACAGATGATTGAGATGTTTTTGCTGCAGTTGGTAAACTCT
GGTTCTTGGAGCTACTTGGAATGGAATGCAAAAGAACAGGATTAGTGGTAGTGGATGGTG
ATGTTGACGAAGAGGGAACATTATCTGTCCTCACTAACTGCATTCGACTAGTCACATTCA
AAGAGCTAGCACCTATGGAGGTAATGGTATCTGATTTTGCAACGGGAATGGTACCCCCAG
GCGAACCTTCAATCGGTTGGTGAGATTGGGCTTTTTGTTGCGTTGCATACTGGATGGTGT
TGCTGTTGTGAAAACCAACAGTTTGGGTAGCTCCTTGCACACGTTGCTGAGGATTTGACT
GAGAATTTATCACTTGTTGCTGCAAATCGAAAAGCATTTTCTGCTGCTCCATGGTCAGAT
GTTGCTGTGAGTGTAGAGCCTTTAATAACTGAAGTTTCATTTGATGATCAGAAGATAGTT
GTGTATTCATGTTCGCATCACTGGGCACATGAACAGGTCGTATCTTCATTTGCTGCTGCT
CCTGTACTGAGTGCTGAACCTGCTGATGATGTTGAGGTTGTTGCTGTTGCTGCAGAACCT
GAATTTCCTGAAGGCCTCCCTGAAAGATGGTATGACTCTGGACCAGAGGTTGCTGTTGCT
GGAGTTGAGCCTGGAGAATCACTTGAGGTTGCTCGAACTGAGCTTGGACAACATGTTCAG
GCTGTGTGATGTTTAAGTTTGCCTGGCTGCCTTGCACTGTTTGAGTAACCGCACGCTGCT
TCTGGTCAGAATAGCAATCTTGATCTACTTTCTGTGGTGCCATAATATTTTCCAGTTGGT
TTGGTGTAGCTATAGCTTTTGCTAATTGTTCAGCCTGTTGGTTTTGCTGAGGTAGAAGCG
AGGTGTCGAACTGGATGTTATTTTGTTGCAGGAATTGGGGCTGGAAGCTGATTTGCCTTG
ATATATCAGCTGCAGACAAATTTTGCACATGTTTGCCAGCTAATGAGTTTAGCAACTCTG
GTTGCATAACAGTGCCAGCTAGTGACAAGTTCTGCTGCATATTCATCCACTGAACTGACT
GGGCTAAGTTTAGGCCAGGCACTATACTGTTCTGAGTATTCATATCTTTCTTGCATATCT
CCTCACCAAGCCATGGCATGGTTCTCTTAAAAAGATTATCCATTCCAGAGGTATCATCAT
CTGCGGATATAGTTTTTTTTATCAGAAAAACTGAGTTGTGCATCAAAGGACTTATTATCT
ACTCCCTCCGTCCCAAAATAAATGTCTTAAGCTTAGTACATTTTTATACTGGAGTTAATA
CAAAGTTGAGACAGTTATTTTGGGACAGAGGGAGTAGTTATTTGCTAGAAGGATACGTGC
TCGGGAGTTTCCGGTGATACAATGAAGATAGATGCATTATTCATGAAGAAAGCAGAACTG
TAGTTCCGTGGTTACCTATCATCCCAGGTTGTCTCGCACGCTTTGCAGTGAATAATGGTG
TGGGGTAGATGAAGAATGGAGCGATGACAGGCTCAATGTCCCAAAGGGAAACCCTGGTGC
GTCTTTCACTTGGTGCTGCTTCATCCCATGCAACCTACTCATACATACTACTATTCTCAG
CAAAAATGAAGGGGATGTCTTCTCAGTTTGGAGGATTTAATTTGTATGGAGTAGACCAAA
CCTGAATATTGCGCCACTGAGAGTTTTTCCACCTTACAGGATCCAGATCACTTATGCCAG
TTATTGTGCCCATGTACCTGCAAGCATATATCACAACATACCAGTTTTTACAAAATTCAT
TTCTTGTATAAAACTTCAAACACACAAAAACTTGAGCGTGTGCACTAAGTTCAAATGCAA
CAAACCGACAGTTAAAAGAAAAGGTACACTACAAACTACAAGGATATTCTAACGGTATGT
TTGGATGTATGCATTGGGAGGTAATATTGGCATTCGGCATTTATAACTCCCGAATGCCAG
CGTTTGGATGTCCTGTATATTCGGTTGTGGCATTCTAGCGCGATATTGGACACAACGCGT
CAAGACTAGCGAGTGCCCGCACGAATACCTTGCCTCCTAGCTCTGTTTTCGGATGAAACT
GCCCAGACCAGCTCGCTTACCTTTTCAACCCACCTGAAAACAGAGGACAGAGAGGCGCGG
GAAAAGCCGCGCAGGTGGGTACGGTGCTCGTCTCCCGCCACCGTCCTCCTCCTTCTCTCC
CATCTCCGGCAGGTCTCCTTCATCTCCCTCCGTCCTCCATCTTCTCCGCTTGCTCCGGTC
TCCGGCGGATCTCGTCCATATCTCCCTGTCCTCCCTGTCCTCCCCACCCCACTCATGTCC
AGGAATCCCCGCTGCCGGCGACCCGTCCCTTGGATGTCCCTCTCCCACCTCTATCGCTGG
TAGCCCCGTCCATCTACCACCCCATCTGCCCTTCTCCCTCTCCAACTCAACCCTAATCCC
ACGGCCGCCCTAATCCCATGGCCACTCCTCCCTCCCGTTCAGATCCGATGGCCGCTCCCC
CTCTTCCCCATCACAGCTCCTCCCTCCTTCCCCAGTCTGAAGTTCATCATTATATATTTT
CTACTTACAACTTTCAGCTATCTTCATGTTTTTTGAACAAGATGTGGCTTGTACTACCAT
TTTTTTATTTTTTGCATGCAAATTTTATTTCTAATATACCATCTTTCAATTATATGCATG
TGTTGTTGAAATTCCATTTCCAAATTTGTACAACCATTTGTGTTCAAAATTTTCTAAATG
TCCAATTCCACACTTGGTGCATCCAAACATGATTCGGCATTGTTGCTCCCTGTGAATGCC
AGGAGCCCAATACCTGAACATCCAAACACAATCTGTGGTATTGAAGCTCAATACCAATGT
CTTGGGATATTTGGCATTAGAGCCAATTCAATACCCAGGCCCTCAATGCATACATCCAAA
CATAGCGTAAGTGATTTGATGTGAGATGAACGACTATTCAATCTACAAAATTAGGTAAAC
ATGGAATCTATACCTTCTTGTTCCAGATTCTTCGGTCTCAAACATCATTCTAAACCGCAT
GCCAAGAGATAATTGGTTGCCATAGACTGCTTTCTGATACTTGGCAAAAGGAATCACAAA
TTCTGAAGGACTGGCCCTGAAGAAACAGAAGGTTGTCCAATTGAAACTCCAGTATATCAC
TTATTCACATGCCAAAACTCGCAAAGGATAGTATTTACCTTGGGTTATAGAATATTGTGA
ATTGGCTGTTATTTGCTGCTGCATGAGCTGCAGCAGCAAGAACTCCGATATGCATGCTAT
CACTAGACAAGACAGATGATGAGAGGTTAGTAGGTTGCCTATTTGCTCGCCTGATCCCCA
AGAGGAGTTGTTGTTTTGCATCCCTACAATCACAAGAGCAGAATTTTAGTGGCACTGGTT
ACCTTTACAGATAGGTTTATTTGTTACTACATCAATTCTTGAGAAATACCAAGTCAGGAA
AAAGCTGACTGTCCAACAAATAAATGGAGACATCGGCATCAACATTTTACCTAATAAATA
AGACTGAATCACCAGCAATAAGTCTCTTTCCACTGATAAATAAGCTCCAGCCAGTAGTCA
GCAGATGCCTTTTAGGCTGGCCTGGTGAAGAGAAGCACTCATGAAATTAGTGCATTATTC
CTTCCAAAGAAAACAGTCGAATGGATTAAATCATGAAGGAACAGAACTGTAGGCCAAAAC
AGATATATGACATTAAAATATGGGCTTGGCTAACTTCCACCAGCTTTCATTCATGCGTTG
AGAGGAACTAAAAAAACATTTGACTTGCCTCTAAATATATGACGGAATGTCCAAATGGTA
TCATGTAAATCCCTGGCCTGGAGTTCCTGAGCAGGAGGTTGCAATGAGAAGTCCTACACA
TGGTACAACTCGAACAAATAAGAACAAACCAAAAAAAACACTCAACACATGATTTTACAT
CAGAAATAAACTATGCTTACAAGACGAGGGAAAATCCTCTCTGCAGCACGCCGTGGCACG
GAGAATCCTCCATGAGTGCTCGTATCACTCGCGGTCAATGTTTTGCAGAAGAATTCTGTT
TGTGGCTTGTTTTGTTTCAGGGCAAGCTCTGATGCCAGCAATATCTCCTTGTCACACTGT
GTCACCTAGCAGTTACAATCCCCAACCCATTTTTAGGCAAGAACTATAAAACCATGGCAG
TACAAGTACGTCTCGTAATAAAACGATTTCTCTGAACTTTAGGAAGTGACACTTACATTG
CTAACTGGCTGGAGAGTCATCCGAGCATAAACTTCATCCGTCTCAGGATCAGACTGTCAA
GTTTTGTCGAGAGAACAATGACGCCAACAGGTTAGATCGTCCGCATAAAAGAGCACAGGA
CACGCATCTGGTGTCCACTTAGTGGTGTTTGCTCAAAGTGGTAGTGGTTACCTGCATAGT
GACGCTGTGGAGGATGCATATCAGCTTTGATGGAAGATTTGGATAGCTTGGAATCTGCGC
GTCTGCATCCTTTCGCATAGATGCTGCGACCTGACATTGCGTATCAGGGAATAAATACTT
CTTTTTTGCACTGGAACTCCAGACCACTTGCATACAACTTGCAAATTTGCAAGTGGTTTT
CGTAATAATGTGATTTTAATGGACTCTCAACTGAACTTCTACACAGAAAACAGGAATTGC
TCCTATGAAACCTCACACTAAATCAGAAGCACCCATCTCTAATACCTAATATAAGCAAGT
GATTCTTGGAGATACAACCAGGAACCGAGAGGTGTTTCCCGGTGATTCTTTCATGGTTCT
GGTCCATCATGATAGATAGGGACAGACAACCGGGGTACCATGTGAGTTCCCATCAGAGAT
AACATTGGCAGGGATATGATCAAGTATGAACCAAGCCCAAAAAAGGTTGCATGTCCTCAG
AGTTGAGACTTGGAACAGGGTAAGACCGTAAGAGTAAGACCAAAACTCTAGGTAGAAATC
CAGCTCCCAAATTTCTTATCTTCTATTCGAAAATAAATTCCAAGATTCTCTCACACTACA
CTACTGAAGACAAAGTCACCGGGAAAAGAATTAGATTTGCCTCTCAATCAATCAAGAACT
AAAACAAAGCAGTTGTCTGTCTGCAAGACGAAACCGAGGGGCTCAAGAACCATGAGTTGA
CTAATATATGGTTGTCTGCTGCCAGCCGCCGGACACGGAGATGAAGCGACCATGAGGCCG
CTTCGTGCCGGCGGCTATCGCGGGGAGGGAGGAATCATGAGCGCGCCCGCGAGCACGAGG
CGGCCAGAAAGGGACAAGAGAAAGAAGAGAAGACCAAAAAAAAAGGGAGCGTTTTTTCCT
CGTCCAGACTCCAGAGAGGGGGAGGAAAGCAACAGCTTTGATCAGCAAGAGTCATCGGAA
GCAGGAGCTGGGCGGCCATACCTGCTCGCTGTGCCCCTGCGGGAAGTAGACGACGAGGCT
CCCCGGCGGCGGCAGCGCCACCAGCGGCCCCGCGCACGCGTACCACAGCTCCTGGTTCAC
CCTGCTCCCCCTGGGCCCCTCCCCGCCGCCGGCGCCAGAGCCCTCCGGCGCCGCCATCGT
CCGCGCCGCGCACGGCCGCGGTCACTGGTGCCCCCGCCTCCGCCGCCGCCGCCCGGGTGG
CATCGGCGGGGGCACCGCGCGGGGGGGGGGGGGGGGGGGAGGGTG