morexGenes - Barley RNA-seq Database

Contig contig_1568253

Source Contig contig_1568253

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1568253 (6033 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1568253

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14517	1	351 bp	MLOC_14517.1	Available	Available	None
MLOC_14519	4	1045 bp	AK250611.1	Available	Available	None
MLOC_14518	1	387 bp	MLOC_14518.1	Available	Available	None

CDS Structure of MLOC_14517

CDS Structure of MLOC_14519

CDS Structure of MLOC_14518

Contig Sequence (6033 bp)

>contig_1568253 6033 assembly3_WGSMorex_rbca.fasta
GTGTGGTTGAATCTGGCATATTCAGCTGCTAATACTTGAGANNNNNNNNNNNNNNNNNNN
NNNNNNNTCAACAAATTTGGGTCGAATACTTTCTCTTTTCCCTACCGGGGTTTTTATAAA
AGTATATACGACATATTTATTGTCGTCTTGATTTTACGAGTTCTCTTGAGTTGAAAGAGA
CAATAAACATTATATGTTGCATAATCTTCTCCTTATTTTCCCACTAGGTTTGAAGGAGTT
TTGGCAACACATCAAACACTATACTACTCACATTTTTTCCACACGGTTTTCAGAGGAGCC
TCTTTTCAACATGATGATATGGCATCGACAAGAGTATATTAGGGGAGTGTTATGATTTAA
TTATGACATTTAATTAAAGGGAAATCTTCCCTTCTCCTAACCGACACCCATAACAACCGC
ATCCCTCGATGCGTTGTTGAGGAACGGACGCATCCCTGTGTCCTCTCATATTGTATAGAA
GCCTAATCATCAATGAAAGAGATTAAGGGTTTTTACTTTACTATTCATTCATATCTCATC
TCTCTCTCGCTCGGTCTCAAACGTAAACCATCTATTTGGATCCAAAAACAAGAAAAAGTG
ACACTGCAAGTCACCTCGTGGCAGCGTTCCTCAGGGTGGGGATCACACCAGGAGGCGGAG
GAAATGGGTGACGGACATGGGGATGGCACACCGGTAGGGGGTCCCTAGGAGCTGAGAGCT
CTTTCACCAGGAAGGACTGTGCGGTGAGAAAACTCATTGACAAACTCGGCCAATCGCTCA
TGTTCCCTCTTATCGCATTGTGCAATTTGTGCTCCACCACCATGGGCAGTGCCAAGCAGC
TGATGAGGTCCACGCACCGCCTGTCGCCGCCTACCTTCACAGAGGCGCTCTCGTCTATTC
GTTTCATCTCACGCAGATGCAAATCCTTTTCCCTTTGCTTTTTTCGAACTCACCGAGCAG
GCTCATGGCACCACCGTTGATTGATGGGCATACCCTTCGCCGCGAGCTGTCCCAGCCACC
ACCGTCGTCTCATGGTCGTGCTCGTGCCCTACTGCTTCCCGGCCGTGTGTTGGGACCGGC
ACAGCGCGGTGTTGGAACCGTCGTGTGCTCCAACCACAACGACCATATGTTGAAACCATC
AATGCGCTACATTGGAACGGTAAGGCGTTATGCTGCGACCGGGTAGGCATGATGCTCGAA
TTGGCCAATTGTTTTGCTGCAACCAGCAACGATAGCGTTGCGGCGGTGAATGGGTGGCGT
TGAAGAGGCTACAACCGGCAATAGTAGAAGTTGGGACCGTTGAATTTTTTTTCTGCATGT
GACAGTGTTGCGACAACAACCGGGGGAAGGCGTCATGAGCGCTGCTGCGACAATGCTGCA
ACAACAACCAGGGGAAGGCGCCATGATCGCTGATGCGACAACAACCATAACGATAGAAGT
TATGACCGTCAAAGAGCATCTTCTGATGATGCGGGTAAAAAAATGTGCGCTTTGACCAAA
CGGAGGAAGGAGACGAATTAAGGGGGAGAGGGAAGGAGACGAATTGAGGGGGAGATGGCT
TCCAACAGCTGCAGGAAGACAGATCGAACGGCTCTGGAGGTAGACAGATTGAACGACTCT
GGAGGTGACATGTACAAGCCGTGGCCAATCGCCCAGCTGCAATGGTAATCTACATCGCAA
GCTATCAGAATTAATTCAACCATAAAAATTAAGGAAATCACTTGTAATCAGCTGACTGAA
AACTCCTGAACGTAAGCCACGTCCCGTGATGGACACGTGTTCTGGACCCACCACTGCTTT
TCTTCGGTTAAGTCTTATCTCATTGTTTCGCACAAACAACTCTCCTCCATTCCTTTTCCA
TTCTCACTCTGGTCCACATTCTCGCACAGGAGAGCTCCCATAGCGACGATTCCCACCCCC
ACCACCCCTTTAAAGCAGGAGAACAACGGCGATCACCATGTGCTGCATCTCCACTGCCTC
AGCTCCGTCGCAGCATCAGAAGTCGACCGCCGCAAGCTTCATCGTAGCATCTCGTCGTTG
TCGCAGCATCAAGCATCGCCGCCGCATGCGCGTGGTGGTACTGCAGTGGGGCGCTGATCG
GTGGCTCCTGTTGTTGCGATGCAGCGCCTACGCGGAGGCTTAGAGCGCGGTGTTGCAAAG
AAGCTTTCACCGGCGGCGGCCGGAGCTGCGATAAGAACACGAAGCTGCAAACAATCTTCA
TTTGCGAGCCCGGAGTTGTGATGCAGCGGGAGGTGTTGAAGTGGAGGTTCACTGGTGGCT
GGAATGGAGCTTCACCGACAGGCCTGAGCTGTGATGCAGCGGGGTTGGTGGCTGCAATGG
AGCTTCACCGGTGGCCTTGACCTGCAATGCAACAGGGTAAGCGTTGTAGTGTAGCATCGC
CGGCGTCGATGACGCTTGAAATGAAACATCATAGACGCTACATTGTAGCATCATCGACAC
CGGCGATGGCTGCAATGAAACTTCACCGGCCCTACAGTATAGTTTCACCGGCCCTGCTTC
GAGCATGCGGCGCGTCCCTACAACGATGTTGTCATGCTCGCATTGACCCGATCAGAATGA
ATCCAACGACGTCAGACCCAACTGATTTCCCTAAAAAATCAACCGGATGATTTGTAGCAT
CCGCCTAAAAATAACTTGCAGGAAACTAAAGCAAGGCAAACAAATATTCAAAAATACTCC
CTTTATTCCTAGAGAAATCAGTCGGATGATTTGTAGCATCCGCCTAAAAATAACTTGCAG
GAAACTAAAGTAGGGCAAACAAATTTTCAAAAATACTCCCTTCATTCCTAAATACTCCCT
CCGTTCCAAAATATAAGTCTTTTTAGAGGTTTCACTAGTGAATTATATACGAATGTATAC
AAACATACTTTAGAATGGATATTCATCCATTTTGCTTCGTATGCAGACGTTTAGTAAAAT
GTCTTAAAAAACTTATATTTAGGAACGGAGGGAGTACAAGTCTGTTTAAATGTTTCATTA
AGGAAAATACAAGTCTGTTTAATGGTTTCATTAAGGAACTACCTACAAATGTATATACTC
CCTCCGTCCAAAAATACTTTTCATATGAATGGATGCATCTAGATGTATTTTAGTTCTATA
TACATCCATTTTTATACATTTATGCGACAAGTAATTCTGGACGAAGGGAGTACATACTTT
AGAGACTCATTTTTGTTTCGTATGTAGTTCCCTAGTGAAATCTTTAAAAGAAGCAAACCA
ACCTACATATGAGCGTTTGCGTCTGTATTGTGTTCAAAAAAGTCTCTAAAAAGACATATT
TAGGAATGGGAGTAGAAGGAACAGAGCCACTATGAAGAAATTATGAGAGTTGCAAACCAG
AAGCAACAAATTCAGCTTAACAAGGAACCACAACTCTTAACTTCCAATTACTTTCGGTGA
TCATTGAATACAGTTTGATGGTACAACACGCTTGAATGCTTGATGGTGTAATGTTACAAC
TGACCCAAACCTATTAGCCAAAGACACCCACGATGACGAGCAAGGGAGACGCCATTTCCA
GCTTCTACGCAAGTCCGCTGCCAGGTTCACTCTGGGAACTTCATTTCGTATTGCTGAATG
GACTGACATAACAAAGATCAACAAACTCATAAATGGGCAACCGAACTGCACAAGGGAAAA
TCTCAAGCGAACAGGAAGGTGGCATTTACCATAAATGTTGCAGTTATCATCTTTCCCGCA
AACCATCTCCCTTGAAGTGCTTTCTGTGCGCCCATGGCGGCTGTTATGCTATCGAACCGC
AGATACACAAAGCCCGCGGTATTTCTGCAAATCAATGACAGTGCCAAAGGTTAGGCCATA
AGAATTTCTATTACTGTAGGCTACAGACAACATGACTTCGCAAGGCAGACACAATTTGAA
CTTTGAAATAATCACACAACCAAAAGAAGTGTTTTTTTTTTTGCAAGGGAAAGGGCCACA
ACAAACAACAAAAGCAGAAAGCTTCACGGTTTAAAGCAATATATTACTTGATCCCACAAT
GTAAATACTAGTGAGCAAACAAACAAGGAAATAATTGAAGTGAGCAGGCAATGTTTCAGT
CTTATATCTAAGATAATCTACAAAAGAATTGTTTCGATAATGCAGCATTCCAATAGTGAA
ACAACCAAAAAAAGATTCTGACAACATGGCTCAACACAATTACTTAAATACATTAATAAG
AATCAGTTACTTACTTGTCTACAAAAATGTGTCTTACTTGCCCAAACTTAGAACATTCTT
CTCGAACGTCATCTCTAATATCTAAATCAAAATCCGGATCCGTCTGCAACAAAAAGTTAC
AATTTTATCAGATAATTTTGTTGAAACAAAGGGGAGATAGAAGCTCCTCCAGCCAAATAA
CGACAAAATATTGACTGTTGCCAGCAATAAAAATAACAGGAATTCAGTAGTCAAATAACC
TCCACAGCAGGATCAAACATATTCTTCAGCAATAGGCATTCACTAGGTGGAGCCATGTCA
ATGGTCTGGGTAATAACCGGAACAGATGCCCCTGGAATTAAACCAAGACCAGGCACCATA
GGCTGTAGAGCAGTGCCGGCTGCAGGAGCACCAAGAACTGATGCAGGTTGTGGCAATGCC
ACGGCAGAAGCACCCAACCCAGAAGTCAAACTGTAGATTGACAAATTAAAAGAGAAGGTG
ATGTTAGATGAGAGCATTATGCATAGATACCAAGACATCTATCTTAAAAGCATTATATGG
CACAGATTTCTTGCCAAGCTAACTTTTGGATATTTGCAAGAGTCCAAACATCACAAGAAT
ATAAAGGTATTTTAGCAAGTTTTTCCTTCATGTGGTAAGCAATCATCTTTAACACTATGT
AACAACAAAATATTGTTCTACTACAGTCCCATTTAACATGTGAACATCGCTCTTCAAATT
CGCAGTCAGTGCAATTGATAACTGATGAGTATTTTCCTCATTTCTTAAGCACTCACTGTT
CACATGTTAAATGTTAGAATTATAGTAGAACAGAATATTTTAACCAAACCAAGTACACCA
AAGAATGGAGGAGGCCCATGGAGAATGACCTTCACAAGCTAGATATATATGTAACAGTGT
TGTTGTAGTGGTGGATGAATCCTGGTGATAATATAATAGAGGTCAATAACGAAAGATTTC
GGTGCGAATTATGGCACTCTTACAAGTATATAATGGACATTCTACTCAATCAATTGAAGG
CTAAACGGCCTTCATTATATGAAGTTCGGAACTATCTTGATGTTATGAAAGATTTGAGGA
TGAGTGGCATGATGCTAAAATATACAGTATATATTATCTAAAATAGCAAAACACATTAAA
TAAAATCACAGGTACAAAGAGATGTGGATTTAGATTGTACAACCTCTGTACCAACATGTA
AGACGTTTTTGGGTTTTACACAGGGCATATGAAACGACTTACATTTTGTTACGGAGTAAC
ATAGTCATGTGAAGAATATATCCTCGGAACGACAATATAAAGACAAAAAATACCTGGTGG
TAGCACCACTACGGTCCAGTTTCTGCATAAGAAGAGCTCTCGAACTAGCATTCAGTGCCT
ACAAACATGTGGGGAAGTCAAACAATGTAGAAATATAGTAAGCTATATAGATAGCATTTG
AAAACAATCATGCTAACTACTTCTCACATCTGTATACTAAATATGAGGATGGAAAAAGCG
AACAGGAATGCGTGCATGGCTAATGTGCATCAACTTCTTACATCTGTATACTAAATATGT
AAAGACACATACAGAGAGAATCTCTGAGATGGAATTCACCATGTCACCCATTTTAGACAC
TAGAAATCTGAGAACCATGTCACCCATTTTAGACACTAGAAATCTGAGAACCTAGGCGGC
GGCACAACAACAACAACAACCAAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGAAACCCATAAGATCTCGAAACCAAGTCATGGCTCTGGAAGGTGGATAGCTAACTTCCA
CGCACCCCTGTCCATGGCTAAGTCTTTGTCGAT