morexGenes - Barley RNA-seq Database

Contig contig_1568048
Source Contig contig_1568048
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1568048 (6112 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1568048

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14427	1	1018 bp	MLOC_14427.1	Available	Available	LOC_Os08g25070.1, FRAME:-3, EVALUE:8e-33, 13108.m02572 protein PME/invertase inhibitor, putative, expressed
CDS Structure of MLOC_14427

Contig Sequence (6112 bp)

>contig_1568048 6112 assembly3_WGSMorex_rbca.fasta
ATCATGAACAAGGAAATATATTAATAANNNNNNNNNNNNNNNNNCTAGGGCATATTTCCA
ACAGTTTTAAACCTACGCGCTGTAGAGAAGCACTAGCAGCTAGTTGGTCATGTGGTTTCC
CTTGCTTTGCGGAAGCGCTAGGGTGCGAGGTCGAATTCTCGTGAGCTATTTTTGGCGGTC
CTTTTTAGCGTTGCACAATCGTGGGCCGGTTGTGGCGGATTTAGGGGGTGGCTAGGGTGG
TCCATGGACAACCTCGAGATTTTCACATAGTCTATGTATCATAAAAAAATAGAAAAAAAA
TATATTTCTATAAAGAATTACACTGTTGGACCATGCTGCAATATTGAGCTGGATCCGCCA
GTGTGTGCTGGCCCATCCAGCCACAGCTGCACGCGCCAGTTACCTTTCGTGGCGTAGAAG
GCGCCCTATAAGAGGTCCCAAAATCCTTCTTGTGCATGAACATGAATAAGTACATATTGA
AACTACTCTGCATATGAACGGTACGACAAGACAGTTGATCATCTCTAAATACTATAGCCC
ACAAACTGAATCATCTATGGTTGTCTTCAATCGAATAAAGTGTTGGACCGAAATTCATCG
TACGTATAACATGAATGGTGCTCCATGGACGTTGATGCCTGTGACTCAATCATCCCCGCC
CGAATCCTTGCACCAATAGATTGTCCTCCATGTTGCAACTCTATTTAGGAAAAAAAGTTC
ATTTTATCGATCATATGTGAAGTGCTTGGTCGGCTGACACACGGGTCTGAAGACATACAT
CGAGAGAACACGCACGCATCTGTCCAGTGTCCACCTGGACGTAAATCCGGCCAAAATTTA
CGCTACAAATTGGCCCACATGGTCATGAGATCGACAGATTTTCCGCGTGAGATAGCCCGT
TGGGTCGTTGTATTTGTCCGTCTCGATCCAAAACAAACAGGAACGAACCGAATGCGTCCT
TTTTTTGAATTGTTTGGATTGTTTACCACGGATCGAATGCGTCCTTATCTAACCAACCAC
TCATATTACAGATAGAACAACTAATCACAAAGGTTATTATGCAATATACGAAAGGGTAAT
GTTGGCTTCCAGCCGGCCGACCCACTGTTTGTGTCGGTCATGCGCGCGCTTGATACACGG
CGTGGGTTCCACACACCGCTCGGGCCTCCCACCTTATCCTTTTACATGCAAGGCACGTTG
TGGTCCACTCATCTTTTTCCTTTTGCACTGATGCTACTCCCTCATTAGTGGCGGGGCCAG
AAAAATTCAATCGAGGGGCCAAGTGCTCTTAAAACTGATTGAAAAGGGCAACAACAATTG
AAAATATGTTTTTAACAACAAATCCCCATTGATCTTGCAATGGTCATTAGTAAATATATA
ACATATCCATGGTGTTAGGAGGGGCAAGGGCCCCTGCTGGCCCGTGCCTCTCATCCCCTT
GTTCTTCTTCCCCACAAATTCCCCAACAAATCTATGGATTTCTCATCCTGCTGGCATCAG
GAGAGGACAACGCATGCTCGGGCGTGCTTTTCTATTTGGGTGGGGGAAGGACCACTTGTT
GCGCTGTTGCACATCATGTGGTCAAGGAAAGGATCCGACGACGTGTGACGAGGTTGCCGC
AGCCTTCGGCATTGTGTGGCATGGTGCTAAAAGCGGGAGACCCCTGGGTCGGCCAATGAT
ATGTTGGAAAGGACACCACCGATATCGATGTTGTGTGAGTCAATTTACGGTCGTCAAATC
CCGGTGACCTCCCACGTTGCAACCAATGAGACGGCAAGCTGGAAGCGGCTAGGCGGAGTT
GCAACCAGCAATGACGAAGCTGCAACCTGCAAAGCGAGAAGATATGACCAACAAGCAATG
AAGTTGGAAACCGGGCATGGGAGGTGCTGGAACCAGCCGCCGCAAATGATGCAATCTTTT
TTTGCTAGAACCTTTGATGCAGGAAGCTGGCAACGGCAGCACAAAGGGGCGACGGGCTCG
AAAATGCTGGAACCAACATTTTTATTTTGTTGGAACCATTGATGTAGAAAGCTGGCGAAT
CAACACCGAAAGATACGATGGACCATGGAATACTGAAACCATCACTTTTTTTACTAGAAC
CAGTATTGCAATGAGTTGGCGACGATGATGCCGGGAAGATGCGATGGAAGACGAAATTGC
TACAACAACATAGAGTGAAGGTCGCTAGTAAGAGAAGGGTGATGTGCGAGATGGACAAAA
GAGTGAGAGCCTATTAGAAACATCTCTTATCAAAATTCCGCTCCACGCTGTAGAGGAGCT
CAGTTTTAGCCACTCCTCGAAATCATGTCGACGCTCCTTCTGTTTTGGGAGTCGTACTTG
TAAAGCGGAGAGGATCCGAAAGTCATAATAAACAAGCTTGATCAAAATTGTACGGTTTGA
AGTACTACCTTCGTCCAAGTGTATAAGACATACGCGTACTAACTCAATTGAACGCATGCA
GGTCGACCGCCGCCTATCTTTTGCCTATACGAAAATATTCAGAAATGAAAAGAGAGAGAG
TCGACCGCCGCCTATCTTTTGACTATACGAAAATATTCAGAAATGAAAAGAGAGAGAGAG
AGAAAAAAAACAATGTCCCTTTCCGGGCTCTTACGCAAAACGGAGCAACGCAACGGCGAG
TTTTGCGAGCTTGAACGCGTTGTCGTTCTCCGTCGTCAGAGGCGAAGCCGCTTTGCTCTT
CTCGAACCCGCCCTCGCATTCCTTCGCCGCGGCCGCGGCCTTCTCCAGGATCGCTGTTGC
CTCGCCGAACCTCCCGCCCTTGACCGCAGCGGTGCACGCAGGCTCGTCGTCCACTATGCC
ACCGTACATCGATTGGCACGACCGGAGGCACCGCGCCAGGGCGGCGCCATCCGCCTTGAC
CTCCGCGCCGCTGATACCAAGCAGGCGGTCGATCTTGGCCTCCGTGCTGGTGGCGTTGGT
CGCGAGGAGGTCCAAGGCGACGGCGGCGAGGCCTTGGTAGTCGCCGGCGCCGCCCGCGGA
GCGGAGGGCACCCAAGCAGAACGTGACGTCGAAGTAGGTGCTCCCGCCGCCGACGGTCTT
GCATGCGGCAAGTATCATGTTAGCACTGGCCGGCGGCGCATTCGCAAACGCCTCAGCCGC
CGAAAGGAGGACGGGGAAGAGCAGCAAGATGACGCACACCGCGTTCATCACGCTATGTGT
TGAGGATGGCAGATGAAATGTGATGTGCTGGAAGATTGATTGCATATATTTTACTTTTCG
ATTTGATTCTATATTTGCCCACCACGCTCATCACGCGAGCATCAATGGACTGTTCTTCAT
GCTCATACTAATACCATGGGTACTTTTGGATTTATATTATGGCATTAAAAAGTTGCCCCG
GTATTTCAGATAAATGGCACTTCACACCGTCAGGAAAAGCCAGAGAAGCCCAACACGTGG
CTAGCAGCCTAGCACCATAGAACAGAACAGGCAGACTTTTTTTTAATATAATACAGATGC
AAGCGCTCACTCATCCCTATAGACGCACATACATACATTATATCTTTATGAGTACCTTTA
AAAAACATAATCAACATATAATCTTAAGATTTACGAAGTTATCGTAGACGTCTCGTCGTC
AACGAAAACGTCTCCTCCCACTGAATACGCATCGTCCAAAATCCTAAAATTTCAGAAATA
ATACGAGCATCAAAATTTAAACCCTGATGAACTAAAAATACCATAATCCTTCTAACAATT
CAACCATAGATTAATTCGCAACAGAACTGCCAAACTACTACGTTTCGATGCAAATGAGTC
ACGCTAACTATCGTGCCATAGTGGTTTCCTTTTATGCTTTTTGGGACCAACATAACTAGC
CAGTGAGCCATCGCAGCAAGCAATGGACCTGTCAGCTGTAGCTATCATTTCTAAGTTTCA
TCATCCGTGTATGTATCCATCTCGTCACGGTGCATGTCACGACACACGTTATTGCTCCTC
ACTCTACAACTTACAAGTGACTATATTCATTTTCCTTTTTGTTGTGATTTGAGAAAATAT
TCTAGCCTGCAAATCAAGTATGACACAGAATAATTAGACTCGAAAAATAGGTGATGATAA
CCGAGGCAAAAGATGCCAACCAAAGAGGTACAATTATGAGCGGGCCCTGACATTTATTGT
TTCTCTATTTCTTACTAAAAATGAATGAAAATAAGACGCAAGCAACATGCGAGTGGGGCT
TTCTGTACAAATCAGGTCATAGAGAGAGACTATGGTCCAGAAACAATCATGTGGATGGAT
GTAATCCTGACAAATGGTGGCTCATACAGTATGGAATTTATAGGCATGTGATACATGGTA
GCCCATTTAACTTCTGCAAAAAATGCTCTAGTCAATGGGCTTGCTTAATAAGGATGAGTA
GGCCTTTACGAGGTACTTTGATTATTTGTTCTTTTGAGAGCACGAGATTAAGAATGTTGC
GGCTACACGCATCTCTCTGATATGGTGTGCATTAGGGCACTTGTGTATGTTCGGGTCAAA
CTGAGTCAACTTAATTAGGTAACCGATTCAGTGATACTGTGATAGGGTTCCCATCTCATC
ACGTTGCATGTCACGACACATATTATTGCTCCTCGCTCTACCACCTACAAATGACTATAT
TCGTTTTCCTTTATTGTGATTTGAGGAAATATTCTGGCCCGCAAATTGAGTAAGAGACAA
AATACTATGCATGCAATCTTATACGCAAGGAAGTGCTCCGAGAGGTGATAATATAATGAG
ACCTAAAAAACAGGCAATGACAATCAAGGCATGATGCCAACCAAAGGGGTGCAATGATGA
GCGGCCACCACATTTCTATTTCTTACATAAAGAAAATAAAAAAAGACACAAGCAACATGG
TGTAGGGCTTTCCATACAAATCAGGCCATAGAGAGACTATGGTTTAGAAGCAACACCTTC
ATGTGGATGTATGCAATCATTGACACAGAATGTCTCCTACAAATGGATTATGTAGGCATG
GACATGTGACAGTCCCTTAAGTTCAGGGCAGGTCCTGAGATTTTAAAGGCCCGGGGTGAA
ACTAAATCTTGAGGCCCTTTAATATAAACGTCATAACAATTGATAGATACGTAATCATTG
CATATATGATGGTCTATGGAGGAAATTGACAAAGAAGCATATTTTTTTTCATGGGAGTGC
AAAGCCATGTTTAGTGCCAGGCTTAATATAGTTATATGAGTACATAATGTATTTGAGGGG
CCAAATGGCTGTAAATAGTTCAAAATAAATAGGTATAATTTTTCTAAATAGCAGTATATG
AAAAATTAAGAAAGACGAGCCAGTTAATATGGATGGTATGCAAATATTACTCCATATCCA
TATCTTTCAAAATCAAATCAAACGGCACTTAAGTTATGCTTATCTAGTTGTGCAAATTAG
TAAATCAAGAGTTAATTGCCATATCTATATGGTCATCGAACAGATCATTCGAAAAGTACT
AGTCAAGATCAGCATCTAAAACATCGCTTCCTTCATAATCTGTTTGAGATCGGCACCACA
AATATCATTATTAAACTGAAAACATATATCTGTTAATGAGGCATACCGTGGAAGACTTCG
ACTACAAAAGCCCATATCAACAGATGATGTTTTGGTGTGCCGCCGAAGTCCGGCGCCAAG
TCCTATTGCTTGCAATGGGGGCCTCCTCCTAAGGCAAACCTTCTCTGTTCACCTTCGACG
ATCTGGAAGGAGGTGAAGGGCGGCGCCGCTAGGTTTGACGTGCATGATGTTGGCTCCCAG
TGGCTGGATCCTAATTTTATTTTGAGGGCTCCAAGCGGCGGGATCCTAATTGATACATGA
GTTTTGCTTAGTAGAATTCTTTTTGAGAGAAGTTATGTGCATCAGATGGCTGGCCCTAGT
TACGCACAAATAAGTGCCAGACCCAATAATCTATTTTTTATGTGCAATCATGGTCCAGCC
ATACAGGCCCTACTACCTTTTGCTTCTCGTTATCAGCCAGAACAAAAACAACTGCGAAAC
GTACTCGCGATTTCGTGATTACAGCCACTACCTGCGGCGTAATACCTGGGAGGGCCCCCT
AACTTTGCGGGGGCCCGGGGCGGCCACCCCTCCCGCCCCCCTCAGGGCCGGC