morexGenes - Barley RNA-seq Database

Contig contig_1567936

Source Contig contig_1567936

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1567936 (5572 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1567936

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14381	1	773 bp	MLOC_14381.1	Available	Available	LOC_Os03g31510.1, FRAME:+3, EVALUE:6e-21, 13103.m03602 protein cysteine proteinase inhibitor 8 precursor, putative, expressed

CDS Structure of MLOC_14381

Contig Sequence (5572 bp)

>contig_1567936 5572 assembly3_WGSMorex_rbca.fasta
TCTGTTCCATGGAAGGGGGGCGAGTCTTCTTGTGCCGTTGACATGTGTTCTCTGAAATCT
CAACACACACGATTAGTCCTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCATA
AAATATGCCCTAACACAAGGCACCTCTCAAAAAAAAACTTGAGGCAAGGCACAGATCAAG
CATGCACAATCCGGATGACTGGGAGATTTTGGTGGACGAGAGTGGTGAAAAGCGAGCTTT
GCAACAGTCCGCACGCCCACAAAGCCTCCGACATTTGTCCACAGTTTACCAAGAAAGTGC
GTTCGGACCGTCCTACGGACCAATACAACATTGTGTTGAATACATGATGGCTGGATGCGT
TGATAAATTAATTGATGCATACTTGATCTGTGGCTTGTTTCAGTTACAATGTGTACAGAT
CGATATATCATATAGGCTGCACTTTTTATTTTCACAAACTAATCATTGTTGTTAGCTGCT
TGCTACTGTCGAATGCCTGAAAATGGTCAAGTCTAAATCATATTTCTACTAAGGTCAACC
AATGACGTTAGATCTTACTTGAATGATGGATGTCGAGCCGCATGTTATGGCGTGACTGCC
CATGGGCATGTCATCCAATCCCAGTCCCCGTAATTGATAAAAAAATATAGTATTATATGA
TATGCATTGCATTAATTGGTATACAAATATAGTATCACAAGATAAGGATCAAATTAATTT
TATTCAAAAGTAAAATTGTATTGCATAAATATACGTAATTAATTCCTGCCCCTAATGTTA
CAAAGCTCAAGCCATTATATATAGTGTCGTCTTCTTTGCCCATCAACACAACCATTGCAA
GCCCCGTCCCAAACTTCACAAAGCCCATCGATTGATCCAAGGTCAGATAGCAACAACCCC
CAACACCATGAGAACCACCCTCTTCCTTGCAGCCATTGTCATCATCGTCCATGTCGTTGC
TACCCCAACCACAGCAATCCCCGGGGGCTGGGTTAATATCAAGAACATTGCTGACCCGCA
CATCCAGGAGCTTGGCAAGTGGGCAGTATTGGAGCACACCCAATTGGGGGGCAATGATGG
GCTCAGGTTTGTGAAGGTGGTGAGCGCTGAGGAGCAGATTGTGAATGGTGTAAACTATCA
GCTCGTCATTGACGCCTTGAGACTCGATGGCTCACATAGGACATACAAGGCAGTGTTGTT
CGAGAAGGATTCTAGTAACGCGAAGACACGAAAGTTCATATCTTTCACCCCGGCAAACTG
AGTGTTGCCAATCCGATGATATTTAGCCTAGTCGTATCATTTTGAACGTAATAAAAAATG
TCAAAGAATTGATGTGGTGTTTCTACCTAACACAATATGGAAATTAGTCATCGACAACTC
AGAGTGTTTTACTTTTTTAGGCCATAATGGGAGCATGCATGTTGTCACTTAAACTCGTTG
CTATAACGAACAATCTCATGTATAAATATGTTGTCGCGAACATCCTTCCTTTATGAATGG
TTCTGAAATGTGCACTTTCGCCATAAAGTTAAGACACAAAGATGGCCCCTAAAAACAGAC
TAAGTGGTGTTTCACTTTAAGATAACTATTGTAGTCGCTGCTCTTGATGTTATTTATGTC
TTTTTTGTCTTCGCCTTTTATATGTCACTCAGATAAATTGGAAAAAGTTCCCAAAATATT
AAAAGATACTAGACATGTTGCTTATTAAACATTTATTACTTATGCCTTTTTTATTTTGCA
ATGATTTACATATCATACTCATATCATCGGTAAGATGTCCATGTTTACGCAAAGGTGAAC
TAGAGACTCCATGGTGAGTAAAAGTGCATGGCGAGGGGATGTGATGTTTTTGCACCCGAG
CTCAAATGAGTTCAGATGAATAAATAATTCAAAAAATATTGTAAATATACTAAAACAAAT
CTGAATTTTTTGAGACAAACTTGAACAAATGTTCTAAGTGCTCACAATGTTTCATCATGG
AATCACATTTGTAAAAGTTGTGGCAACAAAAAAAATCAAAACTCTAAATATGCTACATTC
GAAAGCATTTTGGAGCAATGATTTTTTCCCACAACTTCTACAAATGTCATTTCATACTGG
CATTTGGCAAGTTATTAAAACATTTGTCAAAGTTTGCTATAAAAAATAGATTTACTAATA
TTTTAAAAGTATTTATCAAATTCAATGTTCACCCGAGCTCATTTATGCTCGGGTGTAGAA
GAGCACTTTTGTTGGCGAGGGCAGATCATGATCGCTATTTCTATGTTTGCGCATGTTAAG
CAAGGAACACCCCCTAGCCATTATATTGGAGCGGCTCATGTACTGACTTTTTCTGTTCCA
AATTTTGAAGTTTACGAAAGGTTGGAATATGTTATTTGCCGCTCATTGCGTCAAGCTGCC
GGTGCTTTGCACAAGCGAGCGACCGAGCAGCGACGCAACGGGCCGGCCCATATAACTGTT
TTGGAAATCTTTTAGAAGGTTCTCTCTACCGAGTTTTTTTTTCTGTTTTTGTTTTAAAAA
TATTCTGAATATTCAAAATATGTTCCGCGTTTTGAAAAATGTTCTGTATTTTCAAAAAAT
ATTCGGGATTTCCAAAAATTGTTATTCAAATTCGAATAATATTCTTGCTTTTGAAAAAAT
ATTCTCAATTTTTAAAAAATGTTCTAGATTTTCTCAAGGGTTGTGGATTTTCAAAACATG
TTTGGATTTTCAAAAATTGTTCTTCAAATTTTATTTCCTTTTGCTTTTTAGAAAAAGTTC
TGGATTCTGAAAAAATATTTGAGATTTTCAAAAATTATTCTTCAAAATAAAAAAATTGCT
TTTAAAAAAATGATTTTATGAAAGGAAAGGAATTTTTTTTATTTTATTCTTTCCTGTTTC
TTTTTCTTTCAGTTTTCGTTTTATTTTTTTATTTTTCAATTACTTGTTTATATGTTCGTG
TTGTTTTATAATTATTCGCAATTGTCTAAAAATGTTTGCCTTACGAAAAATGATTCATGT
TTTCAAATTTGTTCGGGATTTCAAAAATGTTTACGTTTGCAAAAAATGTTCTTGATTTAA
AATATTGTTCAACATTATCCAAAAATGTTTGCAAATTTCAAAAAATATTCTTGTTTCTAA
AATGTTGAGGCCTCCCCAGTATGGAACGGTAATCCCAAAGAAAATTCCGACAACTCGGAT
CCTCACGACCTCTTTGAAGGGTCGATGAAAATTACATGTCGGAGTTCAAGGAAGACAAGA
GCCTTGGTATCGAGACTATATCGTCCCCGAAGATTCGTTTGAACAATACCGCTTCTGACG
GAGCCTCGCGCCACCACTCGACGCATGAAACGCAAGCAACAACTTCTGCAAGCAAATAAG
GATGCACTGAATGAAAAGTGGGTTGAAGTACTCTCGGCCGAGCAAGATCTCGAAGACTCA
CACTGTAGCGCACCAAAACCATACCCACGTAGGCATCTGCTATCGGATTTTGATGAAGAA
CTAGCGACGGACGCGCCCGACCGACCCTAGAGATTGGGATAGGACAATAGGTGAAAACCT
CAACACCCGACTCGCTCCACACCGTTATGGCATGGACCCCATGGACGACCTAGACCTTCA
CGACGTCCGCCGTCACATTAAGGAAAACCGAGCGCCTCCTCGGTCCATCTATGGCTCAAG
AGGACGTGCGCCAACCGAGCCCGACGGCTACGACACATGGTTATACAGGAATGGTTGTGC
CCGAAACCAAGCCTACACACGGCTATCGCCCGACCTCCTACGGGATACTACCCACTTCCA
AGGTCCAGCCCACCCGATCTTCTTTATAGACAAGGTAATGAAACATCAATCTCCATAATC
ATTGAACACCATCAATACAGAACCATAGGATAGCACCACAGACCCAACAGTCTGGATCGA
AGATTTTCTTCTGCACATACACATGGCTAATGGAGACGACCTCCACGGCACCAAATATAT
GTCGCTCAAGCTAAAGGGGTCGACTAGGAATTAGCTCAACAACATGCCTCATCATTCTGT
TGGTAGCTAGGAAGACCTTGAAGATGCCTTTAGGGAAAATTTCCAAGGCACTTACGGTCG
ACCTCCAGACTCTGACGACCTCAGCCGTATCACCAAGAAGACAGGTGAATCTTCTCAAAA
GTTCAAGAAGAGGTTCCTTACAAAAAAGAGCCAGATCATAGGCTTCTCCAATGCTTAATC
TCTGCATTCAAAAACAACATCCGAGATGAATGGCTCGCCCACTAGCTCGGTCAAGACAGG
CCAATAATCATGTCAGCCCTCACTTCGCTGATGACCTACTTTTGCACGGGGGAAGACAAG
TGGCTCACATGAAGCACTCACAATGGCGAGGCACACAAATGGAAAGCCTCGATGCAATAA
AAACAAGTGCAAGCATAAAAATGGTTGGAGCGAGACAAAGGGCACCGAAGTCAATGCAGG
ATCTTCAAACCTAGACCCGGACAAGAAAGGAAACCTTTTAATGGGAATAAGGATGGACCT
AGCCACCTAGACAAAATCCTGGATCGATCGTGCCAAATTCACCACACTCAATATAAACCA
GCAACCCACACTAGGAATTCTCGGGTCTTCAAAAAGGCTAGAAAGGTAGCAAGGGAGGGT
CAAGGTAAAACCCAAAATCATAGTGAAGATGAGGATGAACCTTGGCGGCCCAACAACGGA
GGCCAAAAGAAGTTTCCTAACGAGGTAACATAGGTTAACATGACCTATGTTACCCACATC
CCAAAGAGGGAGAGGAAATGTGTATTTCGGGACATCTACGCGTTAGAGCCATTCGCTCCA
AAGTTTATTTCGTGATCGGCTTACCCGATCACATTCGAAAAACATGACCATCTGACCAGC
ATGAGGCATGGTGGATCAACTACACTTTTCTTGGACCCAATTGTCGATGGTTTGCATCTG
ACGTTGATAACCCACAAGTATAGGGGATCGTAACAGTCTTCGAGGAAAGTATTTTACCCA
AATTTCTTGATTCGACACAAGTGGAGCCAAATAATATTTATTGTTCCTAGCAGCTGAGTT
GTTAATTCAACCACGCTAAGTGTATCCTTTGTAGCAAAAGTTTAGGAGCAAAGCAGAACA
GCAGAAGCAACAATAATAGTAACAATACTAGCAGCAGTTTTGTAGTAATTGTAAAAGTAG
CAGTAAGGATAGTAACTTGCCAAGATTTAGTATATTAAAAACGTAGGCCATGGATATGCG
ATGGATAAATATGGATGAAATTCATCATGTCATAGTTATACACTAAATCGACACAAAACT
AGCACTCCAATTCATCAATATAATGTAGCTATGTATTTCGTATATAGTCATACATGCTTA
CAATAAGAACTTGCATGTCATCTTTTNNNNTACCCTCCCATGGCAGTGGGGTCCATCAGG
AAATCTAAGGGATATTAAGGCCTTCTTTTAATAGAGAACCGGAACAAACCACTAACACAT
GGTGATTACTGAACTCCTCAAACTACGACAATCACCGAAAAGAATCCCGATTATTGTCAC
CTTGGGGTATGCGGATCATAACACGTAATAGGTGCACACAACTTGCAAGATA