morexGenes - Barley RNA-seq Database

Contig contig_1567722

Source Contig contig_1567722

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1567722 (4072 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_1567722

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14296	3	1154 bp	MLOC_14296.1	Available	Available	LOC_Os03g49520.1, FRAME:-2, EVALUE:8e-119, 13103.m05370 protein pinin/SDK/memA protein, putative, expressed

CDS Structure of MLOC_14296

Contig Sequence (4072 bp)

>contig_1567722 4072 assembly3_WGSMorex_rbca.fasta
TTTCACTATGTGTCTACATACGAAGCAAAATGANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTACATCCGTATGTGGTCCATTAGTGAAACTCGTAGAAAGACTTATATTTAGAAACGGA
GGGAGTAGTATATGAAGGTCTTAATCTTAAATGTCACCTTTGAGTTTCTAGATATGTTTC
ACGCCAATTGACTGTTTGTATTTATCTGGTCGGCAGACATGAATTGGCAGAGGAAGACCC
AAACGGATGGAGGCTCCACCTAACCACATCGATGATACGCAAACATTCCACTAATTGAGT
CCACCGCACCCATTTTGGACCTGTGAGAGCTCGCCTAAAGCTAACATTTAGCGGTGCAAT
GATCATGACATCCGCCACAGTTCCATGTTGTGGTTGGGCAATTTGATGACGAAAATTATA
TTATTCACTGAGGGGCAAGTCCTCCAACTACATACGCGTCCTTCCAAAATCACGTTTGGG
TGCCGCTATTAACGTATAGAAAATGGAAACCTAACAAAGGGGTGATATTATTAACAGAAA
CTTTCATCACACTTTTCCTAAAGGGAGAGTCAAAGAGATCATTTTCCTAAAGGGAGAGTC
AAAGAGATCAGCAAGCGGTCATTTCCACTCATTAGAATTTTCAGATAAACTAGCAAGGAA
AATACAGTGCTAGAAGGAAATAGAACTATTGGCACGATTAAACTGGTTTTGCCAAAGCAT
ACAACTTGAACGTACAGTGATAGAGGTCATCAACAGTACCGCAACACCTGTACGCTAACG
GCGCAGGTGAAGAACAGGTTGATCGCATGATGATTGTTTTCGCAGGTTGACACTTGATCG
TAAAAGAGCAGACGCAGAGTACGTACGAATGACAATAACAATAATGAAAAGTATGGATAT
GGCCTCAACAGCAAACACAGCTCACAACATTCCCAAAGACAAAAACCCAACAACAATACA
GTCACAACAGAAGAGGGCAACTACAACGATATAGAATCATAATGCGTAAGTGCCTACCTT
GCAAATAACTTTGCCTACTGTGCCTCCTCGGGTACAGGGGCAACATCGGTAGCCTCTTCA
GATGGCTTGGTCGGGTCCTCGTTGATCGCCTCATTAACGCCAAGCACTTCATCCATCAGG
TCGTCCTCCGCGGCCATGTCGTCCACGTCCACATCATCATCCTCGTCGTTGCCACCGTCG
GGGATCCGCCGAGCCTTGGGGCCATGCTCCGCCCTGTGTGTGTCCAGCTCCTTGTCCATT
TCCTGCATGTTAGCAGGCACGTTCCCCCTCCGAGCATTCCGGGCATTCTGAATTCTTTCC
AGCTGCCTCTCAACGTTAGACAGATACTGCTCCTCAACTTGCTTTTGAAACTGTGTGAGC
TCCGTTCTGCGCACAGATTTCCATTCTTCAAATGCCTGCAAGAATTTATGTGAGTTAGGT
TAGTCTGGATTGACGGAATCAGACGACAACTTGTGATTTAAAAGAACATACTCCCTACAA
TCCATATTAATTTTTGCAGCTTTCGTACAATTTTGCACTGAAGTTGTACTAAAGCTGCAA
CAATTAATAAGGGTGTAAATAATTTTGTCAAGTAATATTAAAGGTGGCCCCCAGGAAAAC
ATGCAAACAGATGCTGGAAATGGGACTACTACAATATTATGTGAAGTTCTCAATCCATTA
TTGCATTTGGCAAAAAAGATGCTGGTAAGGTCACTATGAGCCACCATGTCCCTTCACTTC
GGATGTGTATTCATCAAAAGAAATCACAAAGCTGCTCCCGAACAAAGTGAATTATCACAT
GTGCAACTGATGAACTGAAAGTTGGCAACACGCCAGAAAGTTTCCCAGTAAATTTTGGAA
TTCATGGTATGATGATGCACTACAGCATAATTTTGCAATTGAGACCATTATAGGTGACTT
CATACTGTGCAATGTAATTAGCATTATCATAAAAATATGTAAATACCACAACATCCTCTC
TGTGCTATGAAGACCAGCCACAAGCGAGTTATCGTAATTCCCACGAGTTACCAGGTTCTT
GAGTGAACAGGGAACCCTCACAAATCCAGACTGGTGTTTGTACTTTCCGTTTTCATCAAT
ACTCCCTCTGTCCTAAAATAAGTGTCTCAACTTTTTACTAAGTTGTACTAAAGTTGAGGC
ACTTATTTTGGGACGGAGGAAGTATTTCATAACAGAATTTTTTTGGCAACGCATTGATCT
GCTTAGTATTCACCACAAGATACAAAGGCTGCACTCTAGTGGTTTAACTGGTAGATAATC
TAAAAGGTAGACATGAACAGCACAGCAGCAAAAGACGATATTGAATTTACTGCTGCCATT
TTCACGCCATGCATAGCTGAAGTGTTTCAACTTCCAAATATGTACTAAAAGATATAGAAT
AACTAGAAAGGGAAATCATCCTTCAAACATGTGCAGACCACGCAGGGGGCTTTTAATATT
TTTTCAAGATACAACGGAAGTTTTTTATTAACTTATAAGAAAATACCTTTTCCTTGTTTT
GCTCAACAATAAGCGGATCATCAACTATTGGTTTAGCCGGCATGTAATAAATAGCTGGTT
CAGCTTTTGTCCTGAAAATACAAATGGAATCAAACAAGGAACAAACATATAGTATAATGA
GTGGATATGGAAACCCCTATAGACATCAAACATCAAGATTTGCGTACAATCAGAAACGCA
TCTTCCCTCAATTTAATTGTCAATATGGATACTTTTGGACCAGGAATAAAAATAACCTGC
AGCATGCACAAAAAAAAGAACAGGCGCATCAAAAAGCAAGTAGAATCCAACTACGCAAAT
AAGCAGCACAATGGAAGGAAAAGGGATACTGATCATTTATCAAAGTCAAAGTGAAGAATG
AAGAATGATGTAAAGCAGTGAAGTTACCTTAAGAAACTGGACAGCTTTTTGTGATGCTCA
GACCACTGAATGTACAATAGCTCCAACCTCTTTTCTTCTGACTTAGCAGCTACTCGAGCA
CGAAGCGTCTAAATAAGAGCATATCAGGATTAAATCATTTGGCATACAAACACACACAAT
TTAAAATGACTTAAAACAGATGCATGTCACAGAAAAGTGAGCGGGAGATTACCATATCAC
GCCTACGCTTCTCAGCTGCTTGCTCCCGCACTTGCTGCCGCAATCTTTCACTGTCCTCAC
GAGCCTTTTGATCAGCCTACATTCAACCGATCATTTCAGTATGTCCCGACATGTTAAAGC
TAATATTGAGAATATAAAAAAAAGCAATATGATCATCTGCGAGGCATGTAAACTTCCAAG
AGAACACACTAAATTATGTTCCCTCAGGAAAAGATATTGAACTCCTCAAAGTTGGAAAAG
ATCACTGATCTCCCTCAGCTCTAAAGTTCAGTTAAGAATAGTTCAAGAATTGCTAGAGTG
GCAACTGACACCCATGCTAAATATTTTATATTTATTCGAATCTTCTATGCACATCTCCTT
CCCCATGTTTGAAAAATACATGATGCAACCACACATGTAAAACCAAATAAGCAAACAGTA
CACAGAGGGGAGAAAACATCTAGACACAAGACAAGTAACAATAAACATTTAAGTTAAAAA
AAAACTTTGAAGTGATAAAGGGTTAATGTTAAGACCTCAAAAAACAAATGCAAGCCACCT
GAGTTAATTGACATTACTGTAATACAAGCCTAGAGCCTTCCATATAGTGCCTGGCCCATA
GACACACCACGCAATTTTCAATATGAGAACCATGTATGAGAATAACATAAACTATTTAGT
TCATAGCATCCTGTGTATTATTTGAATGGCTAATGATGAACACAAGTAACAAAATGTATA
AATATAGATAAGTACCTTCTGCTGAGCCTCTGATCTACGCATAAAAGCCTCTGAGTTGGA
AAGTTTTTTGTTCTCTTGCTGAAATTTCTGCATTGGCAAGCATGAGGAAGAATCATATAA
ACTGAAATATTCACAAAGGTGAACAAAATGGGTTCTGAAATCAGCTGCATTCCTCTAAAT
TGGACTAAACACATTCAACGAAATGAGGCATGCATAATACTCCCTCCGTTCC