morexGenes - Barley RNA-seq Database

Contig contig_1567709

Source Contig contig_1567709

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1567709 (5244 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_1567709

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14284	22	2838 bp	MLOC_14284.2	Available	Available	None
MLOC_14283	5	2633 bp	None	Available	Available	None
MLOC_14282	1	443 bp	MLOC_14282.1	Available	Available	None

CDS Structure of MLOC_14284

CDS Structure of MLOC_14283

CDS Structure of MLOC_14282

Contig Sequence (5244 bp)

>contig_1567709 5244 assembly3_WGSMorex_rbca.fasta
CCGGCAGCCGCCGCAGGGCCCAGCGCTCTGCGCACCCACCCGCGTCGCCGCTTCAATCTG
CACCGCCCATGTTAATCACGCCCCGCCCCCTCTGCTTCGTCCTCCTCCCCTTCTCCGACC
CCGGCGATCCCGACGGTGTAGTTGGCAGCGGTGGAGTGGTGGGACCTGTCGGTCCGCTTC
GTCGTCAATTCCGATGACCCCCCAATAGTTCTTTTTCCCCACGTCAACCCCAAGTACCTC
AAGTACCTCGGCAACAACAAGCACCCTCCGCTCCTATGGCTCACCGCCGGCTCGCCATAG
GACCAAGCGGGTCGCTGCCAATCTATGACGCCCCACCATCTCACCTCACCCAGCGCCGCC
CCAGGCTGTCCTCACCTCTTCTGTTGATTGGCAGCAGTGGCGGCTGTCATTGCCTCGTCT
ATTAATTGGCACAAAAAACAAAAAGATGAACTGCAGATCAGCATGGCAAGGGCAACAGCA
GATCAAGAGCTGCAGATCGACGGTAATTCTGGAGACCAGAAGAATTCAGGTTCACTTACC
AACAGTGGTAACTGAATTCAGGTTCAGTGATCAACACAGCAACAACATCACATTTTGATC
AGTGTGAGTTCAATGTACTCCAAGTAAATTCTTATCATCATTGTTGGCAACTCCAGTAGC
ATTAAAGACTAAAAGGTAATCTTTAGGCAATTATCTAGAAAGAATGTGAGAATTTCCATG
CTTTGCACATTGCTATGCAATGTGGCCAGTCATGTGTTTCTGTTCCTCTCATGCACCTTC
AGAAACAATTCAGTTTCCTACAGGAACAACGATTAGAAAGAAGAAAGTGCATCCAGAATC
ATTTCAAATTTGTGGTGGAAAGATTGCGATGTTCTCCAATATAACAGCCTTATGTTATTA
CAGGGAATCCACTAAAGAAATTGTGTCCATAGCACTTCGGTACAGTTACACAACAAGAGC
ACAAAAACATCATGTAATGTTTTGATTGAATAATTTGAGAATACTCTATTTATTTACCAC
CCAAGAATGCATAGTGAAGTTTACACTGGCCAATTCTGCATCAAGCATGCCCATGACTCA
TATGAGAGCACCAGGACTACCTGAATTCGGAATTACCAATTAGCAAGCAGTTCAACAGAT
AATTTGATCTGAAATAACGTGTTACCAGGACAACCTGATTGGAGCTTATCACTTTGATCA
GGATTGCGTTTCGATCTTTAGCACTGTTGTAACTTAGGATCAGTACAATCTTCAGCACAA
TGTTATGAGTTTAAAGATGCAACACTGCTGTAACTTAGGATCTATACAATCTTCAGCATA
ATCCAACACTGCTGTAACTTAGGATCAGTACAATTCTGAAACAGCAGCTTGATACAGCAA
GAATATTCAGATTTGACCAAAACTGAGATGGAGCAGGGTGGAGTACCTTCAGACACCGAA
TCTTTTAGCAAAAATATACATATCATCATGTTAGTTGTAGAGATCAAGCTAGTTGAGTCT
TCAGCTCTAGCCTTCAAGGCTGCAGCCTGTATTATACAGATGTTTGTCTCTGGGACTATA
ATTAAAAAGAACAAAAATCACTAATCAACTTTCAATTATTATTTGTTGGACATGCTTTAC
AGACATACACTCTAAAATATGTCTATATGCATCCTTATACATCCCTATGTAATCCCTATT
GAAATCTCTAAAAAAAGTCTTATATTTAGAAACGAAGGGAGTAATTATTGTACCATTCCT
ATAGCTAAAAACAGAACAGGGAAAACTAATTAACTTTTTATCATGTCACAACTATCACTA
ACTACTTGAAAACATCATTGATACATAGCCCTTTCCTAGGGCCTACATATTTGATCACTT
GGCGCATCTGTTACATATTACATATATTTATTCTAGCACTACCACTACTATAGATTGGCA
ACACAACAATATATAATATAAGAAATTACTTGTTAATTATAACAACAAGAAGTGTAAATG
TATGGATTTGGATTTCACAACTTAACGCAAAGTAACACTGCAATGGAAAGAAGAAAAGCC
TGGTCCGGTATACTTTGAAATGAAATTTGATTGAAAGAGCAATTGGATAATAACAAGGGA
AGAACATGAAGGAGAGAGTCGGAGGGTTCACCTATCCAATAGGAGGAGGAGTAGGTTCCT
AGCAGCAGGTCGGATAGCTCGGCGATATGCATAATTGAGTCAAGTTGTCGTAGCTTCTTC
AAGCTGAAGAAATCGAGAGTCTTGGCACCATCACTCACCTGTCTGACACCTTGGTGTGTC
CAGAGTGCAGTGTCGACATCTCATGGTCCTGCAACTACAAGAAGCAGAATTCCTTGCACT
ACATCCAAACATAGCTGAGATTAGTTTGTAGTCCATGCTAGAAACTCACAGTTCACAGTT
AAGTGTCTCGAATTGAAGAATACAATTTCTCATCTTAGTGCATGATACAAAATTTCTTAA
GACGGGGCAAATTTCAGCAGATCAAATAAGGTATCAACTTTTAATTTTACTCCATACATC
TTACCATAGATACAGCCAGTGCACCGGCATCCTTCCGTTGAAATCAATCTGTTGAAACCT
CAAGCCCAGAAGAAGCTATTCTCCTGACTTCACTCCTAAAAATTGCATGTGCATGAACAA
TATTAAGCCATGAGACACTCATGCAATCATGAATTTAATTCCTATAAATTCAACAATCTG
AGGATACATTTTAAGGGCCAATGAATGATAAATGCTAAATGATAGACCTATTGTGTAAAA
TTCTTGGTGCTCAATTCTACTCGGTTGCTTTTCTTGGTGTCTTCTCCTGAGCTAGCACAA
CCATCTTCTTGGTGCAGAGTGACCCTATGTTGATGGTTTACACAAAAAATGATGGAAGGC
TAGAAGAATTCAAACCAACCGGTTACAAGAATGAACTTCTGAATATAAAACAGTGATCCA
GGACATATTCTTAGGTCATATCAATTTGGAGAGTACCGGAACAAAATTTGAAGCAGCACA
TCATCATTGATAAAACACCGTGAACAAAGTGAAGCAGTACATCATCATTGATAAAACACC
GTGAACAAAATGAATCTTTTAATGGCCGTGGGCAATCTCTCTATATGTTTTACAACAAAA
TCCCCATGCTAATACAGTAGAGAATGAATTTTGTATCACCCACAACGAAGTTGGATCCCG
TGTGTCTATCATCAAGCAAAAAGATTGGTTCCTATCTAAACATAAAATGAGGACAAAAGT
CTTGTAATGTGAGTGGTCGTTCAACAAGGATGTTCACGCTAAATGAAGCAAGGTTTCATA
AATATCTATATGAGCCATGAGAAACTTTGTTTAGATATATCGGTAATAATAATATAGTCT
ATTATTCTGTTTTCCTTGCATGTCACGTAATAATAATATAGTCTATTAATTGATAGAACT
ACCTGATGCACTTGTTGTAGCATATTTCCTAGTGTTCGTGCCTTCTGCCGATGATCGCAG
CTGTCCGCAGCTGCACCACCAAGACGCTCATCGTCCTTGGCAATCTTGGACCGAACCCCA
CTGTCTTTTCAGGATTCAGGGATAGGAGGCAAAGACAATAGGATGGGCTGCTGCGACAGG
TAGAAATATAAATTAGGGATGCGTACCTAAACAGTGCCTATAAGTAACAATTAGTCAGTC
TCTTTAGAATTCATCCACAAGATTCATATGAAAATGTCATGGAATGCAAAAACAATAGTA
TGGAAAATTTTCTATCTCTACTGGTGTGAATCAAAAGAACCACTATTATGCCACTATGCA
GCAAAAAATAAATTACCGCAGTCACTTGTTATTCATAAAAATAATAATATAAGCATCTAT
TGGTTTAGAGCCATACGTGAAGTCGTGACCTCAGTCTGAAGCTCACTTGCAACGATTTAA
GCGACAAATGCCCGGAAATTTCATTCGACTGTAAACGTGACATATAACAAAAAAAGAGCA
GTGAAACTGTTACTGAAATTCATTACACACCTGAAAGCTTTTAAATTTCAGAAAAAATGT
AACAAGTAACATCAGATATTGACAGAATGCTCTTCGAATCCCCCTCATTGTTGTGGAGAT
TTTGCCGCCAAGGTTGAACCCTAGGAGGCTGCTGTCATTGCACACATGAACACATGTTAG
TAACCGCATATTGCAGCCAAGAACACAGCATAAGATTTTCTACAGAAATCTTCTTAAAGA
GCCACAATGACAAATGACATTGCCTACTGTTCCGCTACCCTCTATAGCCTGAATTTCCTG
AAAAGGACATTGCATTGCCGAGGAAAAACACACCCCATAGTGTATTGCCTACAAAAAGAC
TATCCCTAATTTCCTAGCAGATTATGCATATCATTTTGCCCCGGCACCCCTACTGTATTG
CCTATAAACATATCATATTTGCCTGGGAAACAACAGGTGCTCCCTGTGTTTTTCTTCCAG
GGATGTCGGCATGGGCAGATGGCAGAATTGATGCCCCTACGTACACACAGTTTGATTTCA
TATCTTACTATTGTTTTCCTAAATGTATTCAATGCCTGCTTGTACAGTCATCTATTTTGC
ATGTATGAAAACCCTCCTTTAAGAGCTGTAAAACTAAATGAACTATTGTTTTGCCTGAAA
ATGACAGTGAACGGTCCCATTATTGCCTAAATCCCTGTGGCATCCGAGGGAGATAATTTC
CGACGACAGATGCACTTCCTCCTCCTAGCGTTACTATCGGTTGTTGCACCTCAAATCCAA
AGGACTGATCCACAAAACCATAGGACAAAAACACTCCCCGCTACCACTTCCCACTAACCC
TGAACTGCCCCCATGTCGCCTTGGAAAATGCATGCGGGGATGTGGGACTTGTTTTTGTTG
GGCAAATTTTTTGCCTCAATTAACTTTTGGTTGGCCCTCTATCTGTCGTTGGCTGCATGA
ATTTAAGTTCCGCTGATAAATTGCTCTTGATTCCGGCAACCTCGCCCTCTACCTCCGTCA
TTACCCCTTTCATCGATGTGGGTGCCGACGACGCATCGGCGACCAAATCTATATGGGATG
CGGCTGGACTCACCTAGTTTTCTCCCTGTGACGCGGCAGTCCGCCTCGCCGATGTTCGCC
GTCCTCATGTCGTTGAACGGCTTCTCCTTTTTGTTATCTCCTCGCTTGCAGGCGAGCAGG
GGGCGGTGGTGGGCGGGGCGAGCAGGGGCGGCCGTGGGCGGGGCGAGCAGGGGCGGCTTC
GCATAATGTATGCTCTACGAACTT