morexGenes - Barley RNA-seq Database

Contig contig_1567646
Source Contig contig_1567646
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1567646 (9682 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1567646

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14249	4	5151 bp	MLOC_14249.1	Available	Available	LOC_Os11g06670.1, FRAME:-1, EVALUE:2e-166, 13111.m00674 protein expressed protein
MLOC_14248	4	3854 bp	MLOC_14248.1	Available	Available	LOC_Os11g06680.2, FRAME:+3, EVALUE:2e-154, 13111.m00676 protein expressed protein
CDS Structure of MLOC_14249

CDS Structure of MLOC_14248

Contig Sequence (9682 bp)

>contig_1567646 9682 assembly3_WGSMorex_rbca.fasta
AGAACATAACTTCTCAACTAACCCCCCTCCCCCCTCACGCAGAACACAATAACTATTGAA
AATGATTCATTTGAACAATCCCAAATCACAATGCCCCACCTAACTAAGTCCTTTTGATAT
TGGCAGATAAATCATCAAGAACGAATACAGACATTTACTTCAACCCACATATGATCATGC
AAGAAATGCAAACTGAGTACGGAAGTTTCTTTTTCCAAGTCATGGGAGATAAAGAACCTT
CGTATTGTGCTACCCTGGCTGGCGACACGGGTGCCCTGCCATCATCCTGCTCCCACGCCG
CACTAATCTTCATCCGGTACCATCTGCACGCAGACACAGGCGAATTTCATAAGAGATAAT
CAAATCTCACAGCGTCCACATGTTGGGAAAAGGGGACGGAAGTTTGCAAAGGATGGTTCT
CAGAGAAGAATGGACAGAAGAACAAAATTATCTTGTAAAATTGCCAAATAGGGTGTCCAC
AAAAAAATTCAGATTTTTTTTTTCCAATTAGGAACCGGCAGTCAGATTCCGCATAGGAAT
CTTCTTTAATACTGTAGATGATATGTCTATTCTCGAAAACAGAAATCCCGCATAGAAATG
GTTACAGGAATGAAACATTCATCTGAAGAAAAATCACATGCCAATCATATCTCTATCTAC
CCGACAGAGGCTCGGAAAAATCCACATGCCGCCATTCAAGAATCTAAGACAAGAACGAGC
ACCAATGGAATGGAAGAAGGGAGGATGCGCGTGGCCCTTGTCGTTACCCTTGGTGGAACA
AGTCGAGGTTGTGGAAGCGGTCAATGTAGATGGCCACCTCGTGCGCCGTCTCCATCGCGC
CCCGCGGCGGCCGGCGGCGTCGCGCGCACACCCGCTTCCACTACCAACGCCGGCGGAATC
GCCTTTGCCGCTCCCCGCAGACCGCGCCGTGTGTGTGGGGGCCAACCCTTACGCTCTCCT
TCTTCCCTCCTTCCCGAGCTTTTATCCCAATGGGCCTCCTCGTCCAGGAGGCCGCTTTGA
GCCCATGTCTGTCCATCTTTCGGCTCAACAGCACCAGAGAGCCCAGCCCACGAAGCATTC
GGCATCGTCCTTGTTAAGCCCTGGAGAAACCCCGCCGCCAGCACCAGCCAGCCACCGCCC
CCAGCTGCTGCCCGTGGCGCCGCCGCGGCGAGGAGCGACGCCGATGATCACGGCCATGTA
CCAAGCGCTTCCGCGCCGCGGAGGCCCCATCCTCGTCCTCCGCCTCCGGGGGCTTCGCGG
CCTCAGCTCGCACGCTGGCGGCGGCGAGCGGTGGAGGGGGCAGCCCCAGCATCAGCAGCA
GCAGGAGGAGAGCAAGGAGGTCAAGGTGTCGGTGTGGTGGGACTTCCAGAAGTGCCAGCT
TCCGCCCGACGCCAACCCCTGCCGCGTGGCCCCGCGCGTCACGGCCGCGCTGCGCGCCGC
CGGCATCCGGGGCCCCGTCGAGATCACCGCCTTCGGCGATGTTTTCGTGCTCCCCCGCCC
CGTCCAGGAGGTCCTCGCGGCCACCGGCGTCGCCTTCTCGCACGTCCCCACCAGTTTCGT
CCTCCGCCAGCCACCATTTCCTTACTCGCCTACTGTCATTCTTTGAATTTTTTTCCCCTA
TCACACGAATTGGGAATGTTATTACCTTATGCCTTGGAATGCATTGCAGAAACGTTCATC
TGTTTTTATGCTGCTGGCTGGTTGCCTAGGTTGTATGTAGTTGGGCGCAGTGGGGTGTGA
TGGGATTGGATATTTGCAGCAAGTTGCATTAATTGGTGCATGAATGCTGAAAATGAAGCA
GATTCTAGATGACACTTCGTTTTATATTTACCGGGTATTGGCATTTGTGCTAAATGTGCC
GCGATCATTTGCAATATACTCCCTCTGTAAACTAATAAAAGAGCGTTTAGATTACTAAAA
TAGTGTTCTAAATGTTTTTATATTAGTTTACGGAGGGAGTATCATTGTGAGGTATACTAT
TTTGTCGATGTTTAATAGGAACCGTTACACTTTCTTGTCTTCATCTTCTTCTTCATAACA
ATAAATAAGAGGTTGCCGATTGGGGTCATCTCAGTTGACCTTAGAATTATTCCCTTTCTT
TATTAAGTTTTAGAAATGTTGGGGTCACTAAAACATGAAAAGGCTCTATATGCAATAATT
CACATGTCTGTGTCATGTAAACAAAAAAAAAGCTGTTTAAGCAGTCCATTTGTGGCCTTT
GGAGAAATTTTACCCAACACAACTGGTAAATAAGTAGATGGACAGTGTAGGGAAGCCTGC
TCGCTTGTCTGCTGTTATGGTGTTATAAGGCTATTTTGGTGAGTGCATATTGCTGAATTT
CAATTCTCAGCTAGTCTCAGAGTACTTCTAATCTTCAACGCTTCTTTTGTTGCTTCAAGT
TAAATGGGACTCAGTTCTGTATTTTTTTTCTTAATAATAATGTTGCATGTAGGTTTTACT
TATCTTGCGCTGCTGTTTGATCTTATGGTACTAATAATGCTGACCTTGTATAGGTGGAAA
GGATGGTTCTGACAGATCATTCATTGCTGATCTTGTCTATTGGATTGCTCAGAACCCTCC
ACCAGCCCATTTCTTCCTTATTTCTGGGGATAAACACTTTGCAAATATTCTGCATCGCCT
TCGGATGAGCAACTACAACATACTGCTAGCCTGTCCTAGTACTGAGCCCAGCATTCTATG
CAGTGCAGCGACAATTATGTGGCCATGGGAGGCTTTGGTTAAAGGGGAGGGGTTTACTCG
AAAACATTTTAACCAGCCACCTGATGGTTTGTCCTGTTCTTGGTATGGTAATTACAGGGG
AGCTCTTGATGACCCCTTCCAGAAAGCAGAACCAAAGCACTCCGTAAATGTATCATTGCA
AACCAAGAAGCCAGAGAAGCCACATATAGTCTCCAAATCTGCGGTCAACGGGCCTGATTA
TGCCAAGTTTATAGATCCTGTACCAGGTGATAGTCAATCTGCTGTGGCTGGTGAAAAAAG
TTCTACAAGCATGAGTTCTTGGCAAAGTATTAGTGAGAGAAAATGCCTCATTGAAACTAA
GAATGAGAAGCCACGATCATCTAATGTCCCATCTTCTCTATCAGATATATTATCTTTAGA
ACAAAAGAAAATCCCGGTTGGTGATGACCCCTTCCTGCAAGGAGAATCCAAGCACTTCAT
GAATGTACCGTTGCAGACCAAGAAACCAGAGGAGACACCTAGAATCCCCAAAGCTGTGGT
CAGCTGTATCAGGAGAGCACTAAACTCTTATCCTGAAGGGGTCAATCCCGAAGATCTTCT
ATCAGAACTTAAACAGAACAGGTTGTTTATGTATAATGGATTATATGGCTTCAAAAACTT
CAGTGCTCTTCTCCAAGCTATGCCTGAGTATGTCAAATTTATAGATCCTTTACCAGGTGA
TAGTCAACCTGCTGTAATTGGTGAAAAAAGCTTTAATAGATTTCCTTCTGCTCAAAGTAA
TGGTGAGGTAAAATGCCTCATTGAGACGAAGAATGAGAAGCCCCCATCATCTAGAGTACC
GTCTTCTCCATCAGATATATTGTCTCCAGAACAAAGGAAAATTCCGATAGCTGATGCTCC
GTCTTCCCAGCGTGGTTTGTTATCTAGAGACCAAAGGAAAGCTCCACCCACAGATTTTGT
TAAGCCATCAGAACCACCTGCGTGTCATATGGAAGCTGATATGGTGAGTGCTGCTGGAAC
TCCCTCCTCAGAGGTTCAAGGTACTAGTACTACTAGTAAAAAAGGGCTGCTTGAAAGGAT
TCAGATACTATGGGCTGGTCCCAAGACCATTAAGCCCCAGGTCCATCCATCCCATGATAC
TACTTTTCCTAAAGGCTCCAGTGATGTAACAAGCCAGGAAGGGCATGATACTGCGCAACA
TAACAGACATTTGAAAAGGGCCATGAAGAATTGTTCCACAACTGACAATCCTGATGCGAA
TGGTCCTGATAACAGTTCAGCAGATAGCACTAGTTTGTCAAATGACCCGTCTAATAACTG
TTCTGAAACAGATGTCAAGGAAAATTTTGCAAATACAACGAATCACTGTAGCAAAACAAT
CGAAATCAGCAAAGCTGAAAAGATACGAGGTTCTGGAGAAAGCAACAAAGGAATGTTCAG
CTGGGCTGCAAGGTGGTGGTCATCTGGAAAATCAGATAAACAAGATAATCAAAATCATGT
TGGAACAAGGAAAGACTTAGATAAAGGATGTGCATTTGTTAACAGTGCAAGTGGACAGCA
AGTAGGAGTTGAAATGTTTGGAAAATCTTACTTCTGGGATGCACTACAGCAATATCTTTT
AACCCATCATGGATCAAAACTTGTTTCAGAAGCAAAGGCAAGGTAAATCTATCTTTCCTT
CTTCTCCTTGTATTTCTTATATCTACCCAACATAAATGTTTGTGACATTGGCCTCAAATT
CTATAAGTAGCAAATTTTACGACATATCACAGAGAATATAACCTGGATTAACAATAGCTC
TTTGGTTAAGAACCAGCTGTAGATCTATAACTGAAATGAGAATAAAAGCTTGATGTCCAG
AAACCTATAGGGTCACATTTTTGCTCGCAAGCTGATCCCATGGTACCTTCTAGAATATTG
TGCAATTTTGTAGAAAAACGCAGAAACTTTATCATGCACCCAGAAACATGACGAGAAGGC
TAGGCATAAGGTACATAGCGGTAGTGTTTTGCTCATAGCGAGTGGATTATTTTATTCATG
ATCCCCTTTTCTGTTCTCCAACTCGTTTGAAGATCCATATGCATTAGTCTGAATATCCTG
ATTACTAGTAACCAATAAGGTGCATTGTGGTTGTCATATCTGGAGTGACAAACATTTCAG
TGTGATTCTCAGTGGATGATCCATCATATGGTATTACAAGCAAATGTCTTGCTCATAAGG
GTTACCAGAAACATATCACCTGTGGAAGCACCAAAATAACACTATGAAATTGTATGGTGT
ATTGCCTGCCTGGTGATGTTGCGGGGTCGTGCAGATAAAAAATCAATGTATTATATGAAT
ACTCTCTTTTCCTTTTAAATACTCCCTCTGTACAGAAATACTTGTCGTTGGCGAAAACCA
GTACAAGTTTCCCCAGAGACAAGTATTGTGGTACAGAGGGAGTAATACTTTCCTTGTCTG
TGCTCATGATTTCATGATATATATTGTTCTTATTGACACGAATCAAATAAGGTTGATATT
CCCTGAAATTGGTATGATATCTATATGCTTGTGAAACATATATAGTCCAGAACCAAACGT
ATTATATTCATCAAATTGCAGTATAGTTATTTCATCTCATGCAATTCTCATCCTATGGTG
GACAAGAACTTGTCTGAAATGTAACGTGAGATAATCGCTGGACCGTTTGCTTAGAAAGTA
TTCCTCAGATAGCTGCTTATTTTTGGTAGGGAGGACTTGGCACATGGACTGCAGAAGGGC
TGTGGGCTTCTCAAAGGTTTTGACGAGAAACATATCCATCAGTTAGTACATCTGTTGATC
TCTGAGAAGAAATGGATCAAGGAGTGTAGGTCAGAAACTTTTCATTTCCAACTGACGCTG
CCTGAGAGAGGAACATGTGCTCCATTACATTCCTGTAAACCAGAAGGGTCAAGTTCTCCT
CTTACAAATGGAAGCACAACCATATCAAGTAAGCTGTTCCCTGCAAGAAACGGAAATAGC
CAGGCCAGCTACAAGGGCAATGAAGACCAAGGTAATGTCGATGACTTTGCCTGGGAAGAG
CTTGGTCCTGTATCCAGTGCTGGTGATCCTCATCCAGAAACTGATAAAGTGGTGCGCTAT
CACCCTCCCACCTTGTCAGATGATGAGTCTTCTGATGGTGAAACTCATGTGGTAGATGAA
CAAGCAGGAAAAGATTCGGATGCTGAATTTTCCGAGGATGAAAATCATACAGCAAGCCAA
CAAGCAAGAAGAGACCCATCGCGGAGCTCGCTCGTTGATATTATTGCCTCATGGGAAACA
GGTGGTTCACCGCCAAGAAATTTCAAGGCGGAATGCTCTCGAACGAATAAACATTATCGT
CTGTGTTATCGTCCTTCTGCCAAGCAGCAGCAGCAACACTCTTGATGTCAAGTCAGCACT
GGTGCTTTGCAAGTATAAAATAAAATGCTGTCACAGTTGAGCTTCATTATTTTGTGTTCT
CTCATTTATTTTTCATTGCCATTATTAACAAAAACACGTTTCTGCTATGCACTAGATGAT
GGTCTTTTGTAATTATGCTAAACATATAAAACCATATAATTTTTTCATGGCAAAACTCTA
TAATTTGCTTGTCTATATAGAGGATTTGGTGTCTGATTACATAATTGGACCAATTGTGCT
GCTTGCGATCGTCTGTGCTTCTTCACCCAGCACTACCAATTTGGGGGACTCTTCCGCATC
AACATCTGATCCTAAACAGCTTCAGGCTTAATCATCTCGCCCTAGATCATCCATTCAAAG
ATACAGTCTCACCTTCCAACAGCAGTTGCTCATTTTTCACATCTTCCTTGCAACTATGCC
TTCCAGCATTCCAAGGCCGGTTCATGTGTTCTCTCTTGTCCAGGCGCTGAACTCGTCCAT
CCTTAGTGCGAAAGAGCTTGAGCTCGGCTTTCCACCCCCACCATGTGCCTAAATTTCAAA
TGGCAAGATGAGGTATGAACAGCTAAACTACTAAAAAGACTAAAACCATGCGGGTTTACA
GAGACAATTAGAGGTATGCACCTTGGCGATCTCTGCTGTATTGGTTGTATTGTCTGTAGT
CCTCAAGCAGATCTTCAACAGTCCGCGTTGCATAAAGACCACTGCTCCAATTGGTCTACA
AAGTAAAACAAAGCATTCATGAACAATCACTGAAGCAACGCCAACTACACACGATTTCTG
TGTTCATGTGCTCTGGAACTTGTGAACAAAGTTTATACCTTAATCCGGCGCCAGCACTCA
TCTTGCTCAACTCCAAACCGATTTCATGGCTCACCTTTGAATCCCCGTCGGCTCTGATTG
CCTAATAGTAAAAATAAAGCATGCAATGCATAACATAAGATTTCTTTCAACGATACGCAC
ATCATAACTTTCAGGTGTAAAATGGTGGATGACAAGGCCATTATCAGACTTTTTGGGGTT
GGGTCGTGCCCAACCATGAAACCAAGTTTTCAGCAATACCGCAGGCACAAACGTGAACGC
GAATCCTGAACAAATGACCACTTTGAACTGTGGGTTTAACGACCAAGCGAGAAACTATGA
TGTCTACATGCCCCCTTCCCCTTTGAACTCCAGATAGTCACTAAAAAACTAAAAAAGAAA
GGACAAAAAGGGCCACAATATTTTCCTTGAACACAAAATGGGCCACAGTATTTTCCCGTG
CCATTAAAGCAAGAGCACTCCTGGATGCACATACATGCTTTCGCTAAAGCAGTCTAAGGA
GGCTTCAGTAAATAAAAAAGAAAGGTGTCATGCAGCGATCAATATCAAAAGTTACATAAA
GGGTAATAACTAAAATAACGCAAGAGCATCGTCTTTACTTACAAGGCATTCACCATATAA
CCCCCGTCCGAGATAAATCTTGAAAGGATTGTGTATGAGCTTCCTTGCAGCCCCTAGACG
ATTTTGAGCTAATAAATTCCCTCTAGCAAGCAGATCGCTAACATCAAGTTGCATTAGCTG
TTTGGAGTGCCAACAAAATGGTCATTGATCATGCCGTCCTCAGGGATACACAAAAGAAGC
TTATAAGCATGATTGCAGTGGATAGACCTTCACCTGCTCAAAAACCTGAGGATTACTGAC
ACAATTTAACTTTGCACGCTCATCCCTGAGAGCTGTATGAAATGATCTGCTACCGGGCAG
CTGCCATTGCCGCAGATCAGCATCCTCTACATATTTGACAACATTTGAAACCCGCTCCTC
ATCTTCTTGGCTCAACAGGTTCTCACATGTCTCCTGGATGAGAAGAGAACAGCCTCATGT
TCTTGTTTCCCAAATGACGCAATACAATGAACATGAACATGCAATGATTCCTCCTACTCA
CGGAATCGGGGTTTTCCAATGTAAGCTTATTGGAGAAATAATCGAATGCAGCTCGGGCAC
TGCTCTTTGACGTGTCGATGCGGAGGTCAAGGTTAGTCGGGCATCGACCCAACTGGGGGA
TCCTTGCTAGTGTGCTTTGCCGGTGATCAAATGCCACAATACTGCATCATTTGGAAATGG
TATGTCACGAGGTTTCTTATTTATACCAGTGCATACACTCCACTGCAAGTGGCTCCTTTC
AATTTTGTAGTCAAGATAAAAAGAAGAAAATTCAGTTGCAGACTTGCTGAAATTTCTGCA
ACTTGTTGGACGCACCTGGGGATGAATCGAGAGAGCTCCAACGCGAAATTCCTCGGACCG
ACGAAATCCAAAAGATAGCAAGATTGGAACCCGGCACCCTTGAAGTCCTCCGCTCTACTT
GTTCCAAGCCAGTGCGAAATAGACGAGCATGATCAATTGGAGGCCAAACGCAATGAGGAA
ATGGTGAGACGCGAGTGAGAGGGAGACCTGAAGGGCTCGACGGAGGAAAAGGGGAGGACG
AGGAGGCGCCGGCGGAGGCGGCGGTGGAAGAGGTCAGCGGCGAGCGCGGAGTAGGCGCCG
GCGAAGGTGGGGTAGTTGTAGAGCGCTAGGTGGGCGGCGTCCTCCTGGTCCTCGGAGGAG
GAGGTCTTGGATGGGTGGGAGTGTGAGAGGATGGCTTCCAGGGAGGCCGCCGAGCGGAAG
GCTCGCCGGAGAGAGGACGCCGCCGGCGAGGAGACGTCACGCAGGAGGCGGGGGCGGCGG
AGCATTATGGTGGATGGGCTTTGTGACCTGGGAAGTGAACTCGCTGCCCTTGTGCGGATG
GGCCGGCATGGATTTAAGCCCACGGCAATGGCGTGAAATGTTCTTCTTTTGTGCCATTCT
CGGGGCATCATTTCTCAGGAGACAAAATAAAAAATCTAAGGGCATCTCCAACGGCAAACC
TCAAACGGAACTGTCCAACGGTCGGACAGACACCAGTCCTTCGACGCAATACCTAAAGAA
ATCTTCCATTTTAAACATTTCAAACAGAAAATTAGAAGAATGTGATATATGTTCATCGCA
CCAGCTCCATATTAAACCAAATATAAACTAAAACTACATATGATAATGGACGGTGAACTC
GTGGGGATGACCTCTAAGGCCATCGAACACCTCCGCCATCGTCGCCGTTGTCATTGTCAC
TGATGCACCAGTTGGGGAAGGCGACCCAGCTGCCACGACTCCCGTCCCCGGCGGCGGCGA
TGCGCTCCATAAACAGCGGCTCCGCCTTGCATTGCCTCGCCTCAGTCTTGAGGCACAGCT
CACGCTCCGACTTGACAACCCAACACGGAGGACCAACTCACTGAGATGGTGTCGGTCTCC
TTGGTGGCTTTGAAGCGGTCGAAGGGCCAGGTCTTCGTCAACACGGGGTTTATGTGGATG
TGCGGCGGCATCATCTGGGTCTTGGCGAGCATCACGAGGCGCACTAGCCCCCAAAGGAGG
ACACATTTCGATAGAGACGAGGTGGTGGCTATCGATTTGGTGGAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNACGTTGCGCCTTAGCAATCGCTAAATCAATCTTCAAGAGGTT
ATTGCCCACGCCGGAGCACGAT