morexGenes - Barley RNA-seq Database

Contig contig_1567541

Source Contig contig_1567541

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1567541 (4595 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1567541

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14205	1	1439 bp	MLOC_14205.1	Available	Available	LOC_Os06g23440.1, FRAME:-3, EVALUE:8e-70, 13106.m02522 protein eukaryotic translation initiation factor 1A, putative, expressed

CDS Structure of MLOC_14205

Contig Sequence (4595 bp)

>contig_1567541 4595 assembly3_WGSMorex_rbca.fasta
TTAAACCGAGACTGCTTTGAGAGGCTATTAATGCTGTGTTCGACTGTTCTACCTGAAACT
TAATGTCTGCATTACCTCCATGTTTATATATGGAATTAAAGTGAATAATACACACCGCAA
ATTCACAATACACAAGCACAATGAATTTTTTTAATCTTATTCTATCAATAAAATTAATGA
AAGTAGTTAATGAAATTCATAAAGGCAACACAAGTACTCCAGTACACAACATCTCCGTAT
CATGAGCACTTATGGCATTGGAACGAGGTTTGATTGCATCACAATGAAAATCCATTAACC
CCTATTTTTAACTCAGCCTTCCTATGGGCATGCCCTTGTTATACTCAGGCTACAGCCCTC
CAATCAGCCAATCCAACCGCACAACCAGCAGAAAACACAAATAGCAGCATGATCGTCACA
TAAAAGCATCAGCAACATGATAGTATCGTAGTTCAAAAAAAAATATTGATAGTATCATGT
TAAAAATAAAGCAACATGATAGTATCAGGGCATGCACATCATAAGAAAAGGTTTATCATG
TGCTGAACCTGTCCAGTAAGCATTGTTCTTTTGACATGCAGAAAAATCCCCTTTTCCTTC
AATTTACCAGGTTAATAACATCAAACCTGGACAAGGATGCCACTTCGAAGGAAATTTCAA
CATGAAATTTACATACAGACTGAAATGAGTGAACAATAAAAAACACCTATTATACATCCA
ATTCAGAAAAAAGTTAGACCATCTTAGCATCAATCACAAGTTAGATATCCTTTGTCCCCT
AAACTTCAATCACAAGTTAGACATCCTTTGTCCCCTAAACTTCAATCAGTAAACAGAACA
TCAATGTCCTTTTGACAAGTATACTTGTGGTGGAACACGACTAGTGTTAAACGAGACTCA
AAGGTCATAAGAACTGGATTGTTATGAATGAATAGCAAATCCAACTGCACAAAGACATAC
GGCAGGCATAAAAATAGCAGCATGATCATAACTAAGATATTCTGTTCCCTGAACTTCAAT
AAGTAAACAGAACGTCAATTGCCCTTCTGAGAGTACATATCCCTGCCTCGAGACACATGT
ATATACTCCCTCCGTTCATAAATTCATAAATACAAGTCTTTTTAAATATTTTACTAGAGG
ACTACATACGAAGCAAAATTAGTAAAACTATACTCTAAAGTAAGTCTATATACATCCGTA
TGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTAGGAACGGAGGGAGTATTTCA
CTAGGGCTAAATGGAAGAATCACAGATTATCGCTAATATTTTTGCCTTGCCCAATTGGCA
GAAAGAAACATAGAAGGCATAAAACTTGTAACATGATCACCATTGCATGCTGCCGTATCA
TACGTTAGTTATAAAAACATCTTTTGTCCCTTAAACTTCAATCAGTAAACAGAAAAAGAA
CCTAGTTTTCCTCAATTTATACAAGTTAAAATAAAGGAATGCTAATGTGCAATCAGATTA
GTAAGCCGAGTCCTGAACATCTCAGGAAGCTCCCCCAACATCCCAAATTACGGCAAACCA
GTTAAGGAGATAAAATAACAAGCGACATAATAATCATCGCATGGCTTGTTGGTTGCAAAC
AACAGTAATACAACGAATAATATAAATAGCAGATCATCGTCATATAACGGCATCAGCAAC
ACGATAATCATAACTAAGACATCCTTTGTCCCCTGAACTTCAATCAGCAAAACAGAACAA
TTGTCCCTTGACACTAGGGTTAAATGAAAGAATCACAGGTTATTGCTACCCTTTTGACAT
TGCCAATCCGTCAGCACAATTGGCAGAAAGAACACAAGGCATAAATATAACTGTAACATG
ATCAACATCGCATGATAGTATCATAAGTTAGTTCATGAATATCTTTTGCCCCAGTAAACA
GAACATAATTGTTCTTTTGAAGAGGACAAACAACTAGTTTTCCAACTCGATCAGCAGAAG
CTAAATAATAAAGGATGCTAATGTGCAATCAGATTAGAGAAGTCGAGTCCTGAACATCTC
AGGAAGCTCCCACGACATCCCAACTTACGGCAAATCAATCAAGGTGAGCAAGCCACGATA
TGAACACCATAACAATCATCACGTGGCTTGTTGGTTGCAAACAATAATAATACGACAAAC
AGCATAAAATAGCAGCATGATCATCGTCATATAAAGCCCCTTCCAATGCTCCATCTTGTC
CAGGTGCTCCTATGCATTGAGGGCTTTAGTTGCTAAACTTTTTAATGTGCTTAGCACCTC
AAAGTGGCCTAATGTCATCAGTAACACGATAGTCATAACTAAGATATCTTGTTCCCTGAA
CTTCAATCAGCAAACAGAACAATTGTCTTTACACTACGGTTAAATGAAAGAATCATAGGT
TACTGCTAACCTTTTGACACTGCCAATCCGTCAGCACAATTGGCAGAAAGAACACAAGGC
ATAAATATAACTAAAAGACCAACATTGCATGATATAGTATCGTAAGTAAGTTGGTTGACC
AATATCTTTTGTCCCTTGAAACTCAATCAGTAAACAGAACATAATTGTTCTTCTTTTGAA
GTGGTCAAACAACTAGTTTTCCTCCTCAATCAGCAGAAGCTAAATAATAAAGGGTGCTAA
CGTGCAATCAGATTAGAGAAGTCGAGTCCTGAACATCTCAGGAAGCTCCCACGACATCCC
AACTTACGGCAAACCAATCAAGGAGATAGCATCGCAAGCCATGATATGAACAAGATAATA
ATTACCACATGGCTTGTTGCAAGCAATAATAACGATAATCCAACAATTATTTAGGCACCC
CAAATCACAACGATTTCTCGTTACCAAATCCATCAATCCACAACAGCCCACCGACCGATA
CAGACAGACAAGGACGGACGCGCGCACGCTATTAGAACAGAATAGAACAGAAAGTATAGA
GGCGAGGCGAGGCGAGGCGAGGCGAGGAGAAGAAAAGGCTTAGATCTTGTCGATGTCCTC
GTCCTCGAATTGGATGTAGTCGCTGTCGCCCTCGCCCTCCTCTGGGCCGTCGACGTCGAC
TCCCTCGTTGAGGCGCAGCGTGTCGGGGAGCTCCCCGTAGGCCTTGAGCAGCCTGGCCTC
GTCGTTCATGTACTTGAGGATGACGTCGGCCTTGTCGTCCTGGTAGTCGCGGAGGCCGAC
GAGGACGATGTCCCCGGCGGCGATCCAGACCTTCTTGTGCATCTTGCCCCGGATGTGGCA
GAGGCGCTTGGTGCCGTCGACGCAGATGGCCTCGCAGCGGCCGTTGCCGAGCATCCGCGT
CACCTGCGCGTACTCCTGGCCGTCCTCCTTGAAGACGAGCTCGCGCTTGTCGTCGTCCGC
CTCGTTCTTGCCCCTCTTGCGGTTCTTGCCTCCCTTACCCTTGTTCTTCGGCATGGCTGG
GGTGGGTCGGCTCTGGGTTGGCTTGGCTCGGCTCGCGGCGACGGAGCTGGACGAAACCCT
CGGTTTTAGATCGAGATGGGGAGCGGTGGCGGTGCGGTCTGCGGTTTCTGGGCTCGGGCT
GGGCTTGCGGGTTGGAATATATAGGTGGAGGACGGTAAGGGGTGGGGTGGAGGAGTCGTG
GCCGCCGGATCTAGGGTTGGGAGGGGGACGGAAGGCTGGGATTCGGCTGTGGAGTGCCGT
GTGCGGGTGGGCCTCGGCTCCGTGGGTGGAGAGGGGTTCGTGGGTGGACAGGACACGAAG
ACTCTTGGAAGTGGGGATCGACGGGGAAAGGATTGGGATTGGGATTTTGCAACTTGGAAT
CCAATCCTCCGTCGGGTTGAGTAGTAGTAGGAGTAGTAGTGCTCAAGGAATACTACAAGC
CATGTTTTGCTTTTCGATTTTCGAATAGAATCCAACCCCATGTTGAGTATTGAGTGCTAC
TAGCAAAAGAGAACTGCTAGAGCAGGAAAAGCAAACGAATCCATGTAGTACTGTACGTGT
TACCGTGTGCCAAAGTCCACGCTGATTGGTGAAGGAAGCCGTCTAATAGTTGACCAAATC
ATTTTAGGATAACATCATCTGCAACCGCAATTTATAAGCGCCTCATATTTTCCTCTGCAC
ATCCGCGTATTTTATATTTGGCTTTCTATCCATGCACCGTTGAGCTACTCTACGAGATCA
ATAGCAAGCCGGAGCATCTTGGCGTTTTTTCGTTGGAGGTGCCGAGCGTCCGTCTCCGCT
GTCGTGAGGGACCGGCGATAGACCCATGCGAGGAGGCGTTCGTCCTCACCGGGCTCCGTC
GACATCCCTGGTGACGGCGTGCGGCGCTTCCCTTGCCCGTTGCCTGTCATGATGAGTGGT
GTGCGCCTCCGATTCCGAAGTGCGCGTGCGGGCCAACGACGCACGCACTAGGACCCAACG
TTGTCCGTGTGAAGGAACGGGTGGTGGGGGAAGGACAACGCGCGGGGCAGGTGTAAACTA
CGCAGTCATAGGGGAGCTGTCCGGTGGCGGGAGGGTCCAGCTCCGACGTCATAGCTCCAT
ACACACGGGAGATGCGGCTTGTTGGAAATATGCCCTAGAGNNNNNNNTAAAATGATTATT
ATTATATTTCCTTATTCATGATAATTGTCTATTGT