morexGenes - Barley RNA-seq Database

Contig contig_1567498
Source Contig contig_1567498
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1567498 (6325 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1567498

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14192	13	2533 bp	MLOC_14192.4	Available	Available	LOC_Os08g06050.1, FRAME:+3, EVALUE:0.0, 13108.m00601 protein OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed
CDS Structure of MLOC_14192

Contig Sequence (6325 bp)

>contig_1567498 6325 assembly3_WGSMorex_rbca.fasta
TCTTCTGTGGCAAGGCGGAGGAGGATGGGGGCCATCTGTTCATCAAATGCAAACATGTCA
AGGGGGTCTGGAGGGCGTTGGAGATGTAGCAGGAACGAGGGATGCTGCAGGAAATCACCT
CGGTGCATCAAGCCCTAGACTATATATGGGGACTGAGCTAGATCAAGCGCGTGCACATCC
TTATGTTCTGGTGGCTATGGTGGTCCAATCGAAACAAGCTGAGGGAAGGGGAGTTGCCGG
AGAAAGCCGAGGAGGTGGCGCGAAGAACTCGGGCCAATTTTATGGAGTATATGCAGATCT
TCAGCGTACCAGGCAAAGGCAAGTGCCCTACCAAATGGAAACCACCTCCGAGTTGTATGA
TCAAGATCAATGCGGATGGATCCTTTATTCCAGGGCAGGCGGACTCGAGCTGGGGTGTTG
TCGCTAGAGATAGCAACGAAGTTTTAGCTGCTCGGGCGGGTCGCCAGGCACAGGCAGAGG
ATGCTTTCGCTGCTGAGGTTTATGCCCTCTCACATGCAATAACAATGGCGGTGAAGCTGG
GAGTGGTACGGGTGATATTTGAAACGGACAACATGCTATTGATGGAGGCTATGGAACTAA
CTTGTGCGGATGCATCAGCGTATGCTGCGGTCATAGAGGACATGAAATACCAACTGAAGA
TCTGGTTCTCCCAACAGAAGATTTCGCTTTGTCGTCGAGAAGCTAACGGTGTCGCGCATC
AACTAGCTTGTATTGGTCGTATGTATGAAACAAATCACTTTGAGGAGTGGGAAAACATTG
TTCCTGCCCAAGTGGCAGTTTGTGTTGAGGGGGATTTGGCCTCACACCGTCCTAGTTAAT
GAGAATTGGTGTTGCCTTAAAAAAACGATGGAGTGGCTGTGGCAGTCAGCGCCCGCATGG
CTCGAGTTGATCGATGCAAATCAGTGAATACGTAGAGAAAATTATAGAACGGTCTGTATA
TGAATACCTGAAACAAATTTAAAAATTGTATTTCAGGTATTTGGAACCACGAGGACTAGA
GGTGACCATCGACACAAGTTTACGAACCTAGAGTGATTTTTTCTCATTACCAAAAATAGG
TGCAGGCCCCGAATGTTTCATTGGACCCCAGCCCAGCCCAGCCCAGCCCAGCATAAGAGC
CTCTAGCAGGGCCAGCTGCCATATCGTCCTCCGATGTAGGAAGTGCAGCGCGGATGGCGA
TGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGTTCCCGCAGCGTCGCTCTTCGGTGCGG
ACTGCCGCCTCTGCTCAGCCGACGTGCTCTCGCCCCCCGAGGTCTGTCATACGCCAACTT
CCCTCGTCCGCCTCTGCCTCTGATCGAATCGACATGCTTTGCTTCTATTGTGTGTGGCCA
ACTCGATAGGTTCGGGCAAGGATCGAGGTGGCGGTGCTCAATTTCCTCGCCTTGCTTTCG
TCTCCCTCTTCTCCGTCCATCTCCGTCCTCCCCCTGGTACGGCGGTTCATAAACCCCAAA
CCCTCCATCTCATCTCATCTGATCCCATAATCGCAGTCATGGCTGTTTCATCCATGTAAC
TAATTAAAAGCTCGGCAAGCTTGACCCCATGCTACTTGGAATGTTTGTGACGCTGTTATT
AGGTCCCAGTTTCATAATCCAGTTCTTCTGTTTAGCGATGATGGTTGTTCATTTATGGAT
TCTTGTTTTGTGTTCCCAATGTTTTGCATACCCTGTAGTTGGTTGTAGCTTCCAGTCAAC
ATGATCTTGGCACAGTTTACTACTGTAGTACATACTGTACATATTTACCGTTGATAAATG
CATTGTGACTGTCTGATTAAGTGTTGTCGGCACAACAGATTTCCCGCAAGTCCACCAACT
GCAGCCTGCGCAGCGGCTTGCTGAGTGATGTTTCATCGGTGTATCTGTCCTACGCCTTCT
GCAAGAGGTCGCTAATGAGAGAAAATGATGCCAAGGCATTCGTCAGAGGTTGTTGTTGTT
GTTGTTGATTTCTGCAGTATCTCAGGAATGCATTCTTCATAATTGGACACATCTTTTCAG
TCATTTAAAATGCTTGTGTAATTTTGATAGTATGGAAAGTCATGGAGATGTGCTACAAGA
TCTTGGGCGAAGGGAAGCTTGTCACCCAGCGGGAGTTGTTCTACAAACTACTGTCGGACT
CACCCAAGTACTTCAGCTGTCAGCGTCATGTGAATCAAACCATCCAAGGTCCTCAAAACT
CAAACACTGCACTTTGTTCTTGTTCCGTCATCGTGAAACATATCCATAGTCCGTTACTCA
TATTTTGCACTTTGCTCTTGTGTAGATGTTGTTTCATTGCTCCGTTGCACAAGGCAGAGT
TTAGGAATCATGGCATCAAGTAGAGGGGCACTGATTGGACGACTTGTGTTGCATGTGTGT
GTATGCTGAAAAGTGGTTTGCCTGATACAAATATGTGCTGTCTGTTAAGGGAATCAATAC
AACTCTTGTTTGCCTCCTCATGAAACTGCAACAGCCTCAACTTTGTGTTCATCTTAGGAA
CCAGAGGAAGAACACATCGATTGTTCCATTCTCGGACCTTCTGGGCATGCCATTACTGGG
GATCTGAACCAATTGAGCAGATTAAATTTGTCTTCAGATGCCCGTTATCTCATTCTAGTG
GAGAAGGTACTGTTTTTGCCCTTTACAATACATTACTGTATTCCACTTGATTTAATTCCA
GCTGACAGCCCTCTATTTGAACAAGGATGCCATATTTCAGAGGCTGGCTGAAGACCGCTT
ATATAATCAGCTTCCATGTATCCTGATCACTGCAAAAGGATATCCTGATATCGCAACGAG
GTTCTGTAACTCCAATCCACCCCGTTATATTGTCGGCTACACAATTTATTCGTACTGATC
CAACTTATCTTTTAATGTTCTGAAACAGGTTTATCTTGCATCGACTGAGCCAGACTTTTC
CAAATATGCCAATATTTGCATTAGTGGACTGGTTAAGCCCTTTCTAATGTTTTTCTTTTT
TGAGAACGGAAGCACTTTCTAATGTTAATACTATGTGTACTATTTTGGTTGTTTGTTTTC
TGGATAAAGTTAGATTCCTTCCCAATTCAGGAACCCTGCAGGGCTCTCTATACTGTGTAC
TTACAAATATGGAAGCATATCAATGGGCTTGGAATCATACAGATACGGTATTCCTTTGGA
TTATCAAAGCTTGACCAAGCCCACATTTTCAGAATGACATTAATGATATTCTTCAATTCC
AGCTTGCAATGTAAAATGGCTTGGCCTAAGAGGAGATGATCTGCAGCTTATCCCTCAGAG
TTCATTCCAAGAGTTGAAACCTCGTGATTTGCAGGTCGCCAAAAGCTTGCTGTCATCTAA
GTTTCTTCAGGTGTGTCTGCTATTTCTCAACTTTCAGAGCATGTGGTGTGTTGAAAATAT
AAAAGTCCAATTTGATTACAACCAGACAAGTATACAGAGCAATTCTTTACGTAATCTTCA
GAGTGTATTCATGTAGCAACAGATAACATTTCCATCATCCATATTTGGAGCCACCTAATA
CCTTGTCGGCTCTGATAAACTGGCGTAGTTGAGAGATGCATGACTAACGATATGTCCGGG
TTAATTTGACCATGACATTGGCTCACAAAATCAAGAGCTCTGAAATGCACCGAGCATCTT
CCCTGGGTATATTCCACGGCTGAGTATGGGGCATAAAATGTTTTGTTGAACTTGAGTATG
GGGCATAAATGGCAGTGTTAAGCATGTATCTACTTCTCAGGTCAAGTTTCACTTGTTACG
AGAAGTTTTAATTCCTTTAAATACACTCCCATATGCAATCAACTGATCATCCTGAACGCA
AAACCAGTACGCACATTGCAAGTCTTCCGAAACTATTCATGTGTGTTATGGACCATCTGA
CATTATTAGGAGTCAATTACTGTCTTCTCTGAATTGCATTACAGCGCCAAGGAGACTGCC
TAGTGCATTGCCCCTCCAACTTGGATGCCACCAAGCATTTGGGATTTTGGGTGATGTCAT
ATTTTTTAAGTTAAGCTGCGTTGTGCCTGCAGGACACGCACAGAGCGGAGTTGACACGGA
TGGTCGAGACGGGCACGCGTGCTGAGATCGAAGCTCTCTATTGCCATGGTTTTGATTTCC
TGGGGAAGTTCATCGCCAGGAAGATTGTGCAGGGTGATTACATTTGACAGTGTTTTTTCT
CTCTGGCTGTATGGCTCATGATGACGAGGCTACTGGTACAGTAGTGTGAGTGTCTCTGTT
AATTGGAGAGCGATATCGCCCATGGCTCATTATGGCTGGTGAGGTCTGAACTTTGACATG
CATAGAACAAAACGGATAGTAAAAGTTCTCCCTCTGAGAGTGGAACGATAGCAAGTAAGC
ACGGTTGTACTCCAGTATATTCGTTTAGGCGGTCAGGGTAATTCAGTTTCTGGTGTATGC
GTATGCCTTCTGCGCTCCCTGACAGTACTCTCCCCATAAAATTGGCAATCCAAATGTTGC
AGGCCTTGGTCGTTCTTTGCTTCCTTTACTTTCTGAGAGAAGGCCACTACAACGATGCCC
TGGAAGCAGAGATCCATGTTGTGGCAGCTGGTATGATAATGCGTGGTAGTGACGGGGCGA
TAGAGGCTGTTTGGATTGAGCCAGGGTCCGCCTCGCCGACCGCGGGCGCGCCAATTTATT
GCCGGCCGATTCCGCCGCCCGTGTCTCGCTAACAAATTGGTGCTGGATTGTAGACAGGTA
AGGCCAGGGCGCATCAATTACTTCCCCCATTCCTAAATATAAGTTTTTTAAAGGTTTCAT
TAGGGAATACATACGGATGTATATAAACATGTTAGTGTAGATTTCCTCATTTTGTTTTGT
ATGTAGTCTTCTAGTGAAATCTTTAAAAAAAAACTTTATATTTAAAAACGAAGAAAGTAT
TTGATAGCGATTCAAACACGGATGATATGCATGGTCAACACCAATATTTTGGACGGGCAT
CTCAAGGCGTCAATCCAAACAGCCCTATATTTGCAGCCTACGCTTCATCTTCCACTACAA
CGATGCCCTCGAAGCAGAGATCCATGTTTTGCAAGGTATGGTTTTTTCCATCAACATACT
GCTCTGGTCATTGTCCACTAGGATTCTTTTGTCGCTTTGAAGACCCTGTCTACTTTTGGT
GTGGACCTTTCGACATATGAACAACTAGTTTCTGAGAGGGTCATTAGTGAATGATAGGGA
GTTTTTGGGATTCGAAGAGAACAAAACAGAGTGGCAGATTCTCTAACAAACTACAGTCGC
ATGAAGCGTACCACGAGAGTGTAGCTTAACCCTAGTCCCCCATATATTGAAGAACATGTG
CCTCTTGACTGAAACTCTATAAACTTGGATGAAACTTCTATTACCCCGGGAAAAGAATCA
TAAAACCTGAATCCTCGGCATCACGGTAGTAAGTGTAGTCGTTCTCCAACATCCATCAGA
AGTTAGACAGGCCCTAGTGGCTGCTGCGTATGCGAGGCTATGACGTGTTTGGTTGCCTGC
ATCATTTTTTGTCCATTTGTATACTTGTCCCAATTGGGTCTGGTTGAGCATATGCATGCA
AAAATCCAACATCTGCATGTTGATTGGTTGCCTGCATGTCCTCTTCCTACATCGTAGCGA
CGCCTATATGAACCGCGTTTGGTTGCTCGCGTTGTATGTGGTCGCACGAGTGCACGTTGT
TTGGTTACATACGAGTATAGACTTGTGCTCAACTTGTACCCTACTTGATGAGCTTACCGA
TACCACTACGCCTTACACACATTCACATCGAGCACATCAACGCCACAACACAAGTATGAC
GATGAATTGGACGAAGATGATGAAGTTCTTCAGCCCTAATGGTCAATCCACCTTGCCAAC
CGCAACCTTGCTGCATGAATGCTCTGGCACATACTTGGAGTAAGCATCTTGTGTCACCCG
CCTAGTCTTAAACTCTCCTCTGTGGTTGCTATTGTCATATCCTGAAACTTGTTTGTTGCA
AGCTTCCCATGAACTGTAAACCCCTGGAACCCTACCTTAGAACACCACATATGTAACGCC
CAAGATGCGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTATCATTACAAGTACATGTACTCGTAATAACTTCGTCTA
GCATACATACTACGAAGTTCTACGAGTGTTCGGTGAGCTTTGATCTCTGGGATCACTGAG
CACAACGATTCTCGACTAGTAAGTCGGGGTCCCCACATCTCAGTTCTACCAAACTTAGCC
AAATAATCACTAACAATATTTTGGG