morexGenes - Barley RNA-seq Database

Contig contig_1567360
Source Contig contig_1567360
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1567360 (6295 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1567360

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14139	5	1658 bp	MLOC_14139.2	Available	Available	LOC_Os08g44010.5, FRAME:-3, EVALUE:0.0, 13108.m04766 protein WD domain, G-beta repeat domain containing protein, expressed
CDS Structure of MLOC_14139

Contig Sequence (6295 bp)

>contig_1567360 6295 assembly3_WGSMorex_rbca.fasta
TCCCAAAATTCTTGTCTTAACTTTGTTTAGAAATGGATGTATCTAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACAAGAATTTTGGGACAGAGGAAGTATTA
GTTTTTGGTATATACATGTTCGGAAACGAGAAATAATAATTGACTTGCAAGCCGCAGCAC
TATTAGAATTTATTTGGAGTACAATTTAACTCAGGCGAGAAACTCTCAAGACCCGAATAT
ACTCGACCTTGACTAAGCTATTTTGTAAGATGGAGGTGGCATATTGCGATCTGTTGTAGA
AGAACATCCTACAAGAATATTACGAATTGACCGGTAAACAGAAAAATCCATTGACATTGG
AAATCACAACACTAGTACAAACTTCAGCTCAGTTATAACTTATACTTCATCACATCATGC
AACACATGCGAACCAGGCTTCAACAGTTATCAGAATTCTAGTAAGCCCAGACAGTTTCCC
CAGAAATCCAAAATGAATAACTGGTGGCAAAATTTGAAGATATAGGAGAACTGTTGAAAT
CTCAGCTGTGCTATATTCTTTTTGACTGTGACTACATCACTTTTTCCTCCAGAAACCATC
CTGGACTTGAGTCGCCATGATTACCGAGATACTATTGGCGTTACTAGAACCGAATCATCG
CATCAGCCTCTTTGTAGCCCAACATACAATGGCAAGAACTCTACAACACCAATTATATGC
ACAACAAACAAGCCTGCCTGTGGGAGAAAAGAACATTTTATCAGAACCAGAGATACCGTT
GGAAATCTTAAGAACAGCTATAGTGAGAGCTAAGAGAAGTATTTCATACACACATACACA
TGAAGTGGAGAAAATAGACCAACAAGCTTCATTTTCTCTGCAGGTGGGGCTTCACAGATT
CTAAAACAACCTGACCATCAGAGGATTTTCTCAACAGTTAGAAAAAATGTAACATTAAAA
AGCACAAAACAACATTTACAATAAATAATTAAAAGGTTGCAGGTACTCACCCTTCCATCA
TAAGACAAAGAAGCAAACAACGATGGATCATGGGAGCTCCATGCAATTCCTACAATTTCA
GTCAGCTCTATGATTCTTTGTCAAAATTTCAATGTACATACAAGTAGGGAGGTTCGACTG
TACCATAGATGCTATCTTCGTAGTCAGTATACGAGTTCAGTAATGGTTCTTCTTGCCTAG
TGGGTGAACCAGAAGGGCTGCAAAAATAAGATTTGGGGCATCAAAATTACAACCTCAAAC
AAATTAATCAAACATGTGAGTAACAGAAACCTTTCGGGTCCAGAGTCATCACTGCCAACT
TTAGCCAACCATAAATTGACAGCTGAATCCGTTCCAGCACTCTATACAGAAGTTTCAATA
GTCAGTTACAATTAAATTAGATATATTACTACACATGCGAGTACACACAAAGCCCCGGCA
GGCGCGTGCGAGAGAGAGAGAGAGAGANNNNNNNAGAGAGAGAGAGAGAGAGAGACCAGA
ATCAGCTCATCATACTCAGGATTGTGCCGAACAGCCCATGTCCTGTAAAAATCATTATAT
CAAGGTCAATTAACTTGACGACCGCTGGAGTGAGAAACCACAAAAGAGAATTAGTAACCA
TATATATTAAATTGGTGAGTTGACAGCATCATCCCATATAGGTGGTAAAGTGCTACAACA
CTAGACCAATAAGAAGTACCAACAATGTTGACATGGGACGAAAACGCACTCATATAAAGG
ATTTCAAGCATCAAGGAGCACACATTTACATCAAATATGCATTAGAACAAATGGTGCGGG
TTTAGCACATTTCATCAACTAAATACACAAAAAACGGATTTTCATTTGAGTTTACTCTAT
GATACACCAACATACCAATGTGAATGTCCAGGGAGATCCTTCAGAGGATGCTTAAGCATT
CTGAGATCCCACAAACGAATTCCAAATTCGTCCTCTGCTGTTGCCTGCACCGCAGAAGAG
ATCCTCAAGCAGCATAAATAAATGAAAGCTGAATGAAAGAAATTTGCAACAACTCTCAGG
TTATCACTGTTACTCCGACATGGATACTAGCATCCAACTCAGCAGAAATTTACAAAATAA
GATTTGAGGTGCCACTGGGCTAAATTAGCCTTATTATAAAAGATAGTGATAAATTTCAAA
CCTGCTGCCAAACACAATCAACACAAAGAATTTGATCAAACAATAACTAAGTAAGAAGTA
GTGGCAAATCAAGATTAACTATTAACTATGTTACTTACACAACTGCAAGAAAAAGAAACT
CTGCAAAACTGAAAGGTAACTGAGAAAAGGAAATTAATAAAAAAATACCCGTTTTCAGGG
TTACCACACAAAAAGGCAACTCATAAACCAGCTGTTCTTCTGATAGAAGAAATAAAACCA
GTTTTTATCGGAAGAACAAGAAGCACCAAACTCACAATTATGTTTTGCTTCTTGGGGTTA
TAATCCACATCCCGGATATGAGCATGTTCAATTGCATTTGATCTCCTAAGAACAATAAGT
CCATGCACATAAATGTAAGTAAAGCATTTGAAAATCCAAACATAAGTATAAGCTCATATA
ATCTGATGTGGTCAAGATTGTCAAAGTAATAACTTCATAGAACGGAGATCCCAGAAGTGG
AGTGACGAATCAGTTATTGTAGCAACTGCGTTGTGATTGTGTGGATCCCAAGCTCCACCA
CGTAAATTGGGAAGCATGTCAGCAGATCCCTGTGATATCACCTGCAATTTCGGTACTCAA
ATTAGGACCATGATGAAGTACCTAAACTCATGCTAATAAAGATATTGATGTTTCAGATTT
TATAAACTCATATTAAGCATATAAATAATGAAAAGAATTTGTAACCTATGTTAAACAAAA
GGATGTCGACACACCTTGGCTGATTTATTTGATGGATCTATGTTCCAGAGAAAAATGTTT
CTGTCATCGATGCTAATTAACTTATCATGCTTCCCCAGTGGCCACCAGAGAACACTGCAA
AAACGAACTAGCTAATAAAGATCACATGCACAAAGAGATGGTCTCACTACAGATCCTCCA
CAAAATATCAAGATATGCAAAGCTAACCAATATTATATGCATAACATGGGAAACTTACAA
AACCAGTACGGAGATCAGAATTAAAAAAAAAAAAGTAACTCGAATAATTGTATATAGTAA
ACAAAATCATCTATCATGTGTTGTGAACTTGTGATAAGAGTGAAGTATGTTCTGCCAAAT
TGATATGTTCAGTGTAGTGTGCCCGTCTTACTAAAACCCTCTCATGTCAGTGCATGCTGC
ATGTTAGCATTGCTACGGCCACAGTCAGAGACCATTATAATTTGCCAATTTGGACTTTGC
AAATACGCACCAGCACAGACACATTAAACAACAAAAGCGTTCTGCGACTGGACTCTGTTT
ACGTCTAGTCTAAAACTCAACAAGCACAAACACACGCTGCATGACAATAAGATTAAATAG
CTCTAGAGTAAGCGCAGAACTTCAAGGCAAACAAGAGTGCACCATCTTATTTTGTCCGTG
TGGTCATCGAGCGCGAAAAGCTGCTCAAGCTGCGGTGAGTTGGACTGCCCATACAGCTCC
GGGATCTTCCAAACTGACGCGCCATAACCCTCACCTGACATTCACATTGCAACACATGGA
GACGCTTTAGAATTGCATCCCAAAATGCTCAATGCATCAAATAAAAAATAGGAGAATTCG
GAGAAGAGTGGAGCATTTCTACCAGAGGTGTAGACCGTGGAGAATAGCCTGTGGTCGAAG
GGGCAGGACTTGAGGTCCCAGATCTCGTTGGGATGGTAGAACAGCCCGTCGCACACGAGC
TCGTTCTCCCCCGGCAGCAGCCGGATCAGGTGCACCTGTTCTTGGACACGAAGAATTCGA
GATCCAATCACGCACCATTCTCAAAGAAGAGATCACCACTCCGATTGCCGCGGTGCAGGG
CAGGGTCCCCCGCAAGAAACGTACCTCGTTCTCCTCCTTGAGGCTGAGGGTTCCGGCGAG
GAAGGTGGTGGAACCGGCGTCCGCGCGCACGTCGGTGATGCACCGCGCCTGGAAGAGGGG
GAAAAGAAGATGAGGAGACGGAAGAGGGGCGCTACGGGAGAGTGTTCTAGAAGCTTCGAC
AAGGTGATATTGCTTGCCTGGTACTTGAGGCCGCCGTAGACGATGCCGCTGGATCCACCC
TGCATTCTCGCTCACGCCGGCGCCGACGATCGGAGATGCGAATGGAGATCGCTGAACGAG
GGGTACGGCGGGGAGTCGCCTTCCACACTCGTTACCAATATTGAAGTCCGCTTTGCTGAA
CAAGAAACGTGTTTAGGTTTAACATGTGTCCTTTTTTCTTGAGTGAAGTCTATTTTAAAG
TTTAAATTCACAGAGTTTATCGAAATCGAACGCTCACCTCTGAATCCCTGAATTTTGTAC
CCTAACCTTTAGAATCCCGGTCAATATCAACCTTACATCCACCCTAAACCTATTTGTATG
GCAATGAAAAGAGAAATCCCGAACGGGGTTACTAGGTTCTCTCACTAACTAGGCGGCCCT
ATGGGTCATATCCATTTTCTTCTCTGCTACTGTTGCGTTTTGTTGCCTGAGCGAGGAAGC
TCACATCGACATGCTCTAGGCCCGAGCGTCTCCCATATGTGTCATGCCGCCGGTCAGGTG
TGCACGCAGATCCCAGCATGTCTCGTGTCGTCGGCCTTGTACGTAGGTGTGAGACATCGA
AGCGGAGTCACTAACGGTGATGTGGGGTGCACTAGGAGCGTCCATTGAACAGCAACTCTC
AGTCGCCGGCCTTGCTGCACATGCTGCTCAGCGTGTCCAGAGCGTGTGCTTCACCAAGTT
CCATCATTACAGATCCCTCAAGCTAGCGGTGTATAAGTTGTTAATATACGTGAGCTGGTT
CCTCAAAAATCCATCCACCTGCTTACCTCATTGCCTGCATCATAGCAGTGTTCGCCCGAG
AGTACTGCACGATGATTCGACGTTTAAGGGTTGTGTGTGTTCGCCCACGGTGACATGCGC
CAGCACGGTCATCGTCTCGTACGGCAAAACTAGCTCCCAGCTCTCGGTGCTCACAATCAA
GGCGCAGTTTGAGCACGAAGCCGAGCAGGCCCGTGTAGCCGTTATACGCGCGCATCATCG
CGCACCTCTCGCCGGCCGTCGCCAAGACGAAGGTCGCTGGCACGCAGGTCCGTGCCTCCG
CCCAGCGGCTTGTGCCGTGCCCGCTTCCGCACCCCCGATGTGCAGAAGTTATATCATCGT
GTACCGGGCACCTACACGCCATGCGCGCCATCGCAGGCCGCCCCTCGCAACACCGGTTCT
TTCTCTCACGTCTCGCCACCAGCGATGGCGTCGGCCACATCGTGCTTTGCATGGACGGAC
CTCCATGGTTGCGCCCGCGTGAGCCATGCAGACTAAAAACACCAGAACCGGGCGCCCTTC
GTGCGGACCTCCATGGATTGCAGTGGTACAGCCAGTCTGATTTCAGCAGAGAGAGGGGGA
GGGATTGGGATAGAAGATGGATATGACATGTGGGGCGGGAATGTCAGTGGAAGTAGACTG
TGATCCCGGGCGGGGTGAAGCTTTTCCCGGTACGCCAAACAAGCCCAGGATTAATGTTGA
CCGGGATTACAAAGGTTAGGGTATGGATTTCAGGGATTTGGACATCAAGGTTTAATTTCG
ACGAGCTCAATGAGTTTAAGGTTTAAAATAAACTTTATTCTTCTTTCTTGGAGGAAATCA
ACAACAGTGTGTTTGTTTCGTGGTAAGTAGAGATGGGAATGGGAGTTAAGGGGTTAGGAT
ATTAAAAGTCCATTGATTGATTAGAGAAAGTAGGAGTTTAAGTGGGAAGGAAAATGGGAG
TTGAGAAAGTCAATTTCTATCATTTTTTCTCACGGGTACTATGTTAACTAGATGATGCAC
CAACGTGTTGCTGCGTAAAACTTGCTAAAAGAATGCATAAAATTACTAAAATATATCTAT
AACTAATGGACCTTCTTTCCAAACATCTCCATTGACGTTGAAGTAGCCAACACCTTGCCT
CTTCCGATGTCCTCCTTGCTTGCGCATAATTTTCTCAAATTGCTTACTTCTGGCAAGACT
CTTGAAGACACCTCTCCCTGTAATCCCTTTCAATAAATCGTTTTCTAGCTCAAGTATAAC
TTGACTGAGAGAATCATTAGTGGATCAAGAGAGATACTAGCAACAACATCATTTGATTTA
GCNNNNGCATTGTTGTTACTAGAAGAAGAAACGTTCTTGCCTTTGTTACTAGTGT