Map Locations of contig_1567118 (5020 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1567118

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_14042 11 1782 bp AK366576 Available Available None





CDS Structure of MLOC_14042






Contig Sequence (5020 bp)

>contig_1567118 5020 assembly3_WGSMorex_rbca.fasta
TTTTTAGTCCCTACACCAAAAAGTCGCTGGAAACAAACACCCCCATAGCCACATAGCCAC
ATGTGAAACCAGTGAGTTGACATGACAGATTAGCAGCAGTTTAGCACGTCGGCTTCACTT
TAGTGCAGGCAGGTTCCAGTCCCAATCTGATCTCCTGGCGATCCTGCTAATCAACAACGG
ACACGTACGGCTATCCGTTTCCTTGAGCAAGAAGCGATTTCGTGTTGCAACAACCCAGGT
CACCGGTAGAGTGGAGGAGCATCCGGTCCAAATTTAGGTAGAGGCTAGGTTTAGGTGTCC
CTGTTGCGCCGAATGACGCCCGGCCATTGTCCAAATCCACACGTTTTTCTTAGGCGTGGA
TGCGTGTTTTCCACATGTGTTTGACGCGTCCATCCTTGCTTTCTTCTCTTACATGGAGCC
ATGGAGGATCGCCGAAAGCAGGGGAGGAAGGAGACCAGGGCCCTCCCTGTCTCGCGCTAG
ATTCAGTTATTAAGGGGCCGGGCAGCTGGTCAGTTTTGCATGTTTGGGTATCACTGATTG
AGTGTATACACTAGTACATGTTTATTTATTTATTTCAGATGGAGGCTTTTCAGTCCAGCT
TTTTATAGAATGCTGGCAAGACACAGCACATATTTCCACTGATGGAGTGGGAAACAACCT
AGCGATTTATTTCTTCAGTGGATTTCGGGGAATGCGACACATCAGCAAGCTTAAGGTGCC
GTGATCATTCTGCAACATCGGTATCATATATGCTCTATTTTCAGAGGAAACAATCAAGAC
ACAGATGCAAGAATTAGCATACCAGCAGGAACAATTGTTGCCACGGTTAGGCATGGAGCC
CCTTGCTTTTATGTTGTGCTCTGAATTCCACCGAACAGGACCGCCGGCTATAACAGGTTT
AAAACCTGGTAGGGCATGATCACCTACCGCCATTTGACCTCATTGCATCAAGTGATCTGT
AAGCAAGGGCCACATAAAGCACTTCATTCACTTAAAAATTTCGGTACATCCGGTTGAGTG
TGTTTTTAGTGAACTAGTGAGGCACCTACGTGCAAAATAAGTACACTATACAACCTATAT
CGAACCAAGAACTTCTGTGTCAGATAGTACACAAGATCTCTCAAACATGAACAAAACAAG
AAAAGTGAACCAATGCCAAAGTTTACTAGATTCATTCAACTCATGTTTGCATTTAGGCAG
ACGCAAATGAATATTTCAGCGCAAAGACATGGTTTGGCAGCGACATACAATTTTGTTCTG
TTCGCGGTACTCTTTAGCAGCTCTCTGGATGCTTAGGTTTATCAGCCAAAGGAGTGCTCG
CTAATATGTATATGAACCTCTAGCTTTACGAGACACAAATGTTGTAGCTACAACCATGTC
CACAATCAAACTAATAATCGTAATTTCTTGCAGATGCAATTAGCAAGTCCGATAAGAAGG
CGCACGTCATAATTGCAGTCGTTGTGAGCATCTGTGCACTGGTAGCTATTTTAGCACTTG
TAGGGTTCTTCTTGTGGAGAAGAAAGAGGACAAAAGCAAGACAATCAGGTAACTCCAAAT
GGTCTATGTAGTTCTGGCTTTGAGCAAAGGAGAGCATCATCTCTGTTTAGTCGAAACATA
AAGAAAAAACTCCTGGAAGAAAAACTGACCTCTTATTTGCTGATGTCATTTCTACGGTTC
TACCTATGATGTTTCAGTAGGTTCACAAAGTAAATGGAGTGGTGTTTTGCACAGTAGAAC
ACTACAAAGTGAAGGAACTAGTCATGGGGTCGATCTGGATCTGCCAATATATGATCTGGA
GACAATAGCAGAAGCCACACAAGGCTTCTCAACTGACAACAAGCTCGGTGAAGGTGGCTA
TGGGCCAGTATACAAGGTACTCCAGTTTTTAAAGACAGTTTATTAGTAGTTTCGAATCAT
CGGAAAATCGACACTTTAGTTCTGGAAAAGAAGTGTATAAAAATACGTCATTAGTAGTTC
AAAGTAAATATGCTAGTCTAGTTTTTCATAATATAGAGCATTCTCTCACGCATCTAACTG
AAAATACTTGCTTCAAAACTGCAGGGTAAGCTTGAGGATGGACAAGAAATAGCTGTCAAA
ACACTTTCTCAGGCATCGACACAGGGTCCCGATGAGTTCAAGAATGAGGTTATGCTGATA
GCGAAACTCCAGCATCGAAATCTTGTTCGGCTGATCGGCTGCTGCATCTGTGGACAAGAG
AAGATACTCATATATGAATACATGGAAAACAAAAGCCTGGACTTCTTTCTGTTTGGTATG
CACTTAACCTCTGTGAGCATGAAAGTTCCCTGTCTTCCAAAGAACAGATACTGATTTACC
TGTGTTCTTATCAGACAAATCCAGAAGCATGCTTCTTGATTGGCAAACCCGGTACCGCAT
AATCGAGGGGATTGCCCGAGGTTTACTGTATCTTCATCAGGACTCGAGATACAGGATCGT
CCACAGAGACCTCAAGACAAGCAACATTCTTCTGGATAAGGACATGACCCCGAAGATTTC
AGATTTCGGCATGGCGAGGATATTCGGTGGTGACGACTCTGAGATCAATACGCTTCGAGT
GGTCGGAACGTAGTAAGTTTTGACAAGCAATTCAATCAACTTATTGTATCAACAATGTGG
ATGATCCTTACATTGTCTGCTCCCTGCTGCAGTGGCTACATGGCTCCCGAGTACGCGATG
GACGGGGTTTTCTCGGTGAAATCAGACGTGTTCAGCTTCGGTGTCATAGTGCTGGAGATC
ATAACCGGTATCAGGAACAGAGGCGTGTACAGCTACTCCAACCACCTAAACCTTCTAGCA
CATGTAAGCCTGAATGAAAGAACATGTGTGATGACCAGTCCTACACACACCTAAGCTGAT
CCATGTCTCACCACTATCTCTGAATCTCTGAACATTTTTACCAGGCGTGGAGCTTGCTGA
GCGAGGGGAAGAGCCTGGAGCTGGTGGACGAGACCCTGAAAGGGACGTTCGACTCGGAGG
AGGTGGTCAAGTGCCTCAAGGTGGGGCTGCTGTGCGTGCAGGAGAACCCGGACGACCGGC
CGCTCATGTCGCAGGCGCTCATGATGCTCGCCGCCGCCGACGCCGCGTCCCTGGCGGCCC
CCAAGCAGCCCGGCTTCGCGGCGAGGCGAGCCGCGGCGACGGCGACGGTGACGGTGACGG
AGGACACGTCGTCGAGCAGGGCCGACCGCAGCTTCGTGGACAGCATGACCATCACCATGA
TCGAGGGCCGGTAGAGACCGTCATGGCTCGCTGATTTGCGTACTACGTAGTCTAGCACTG
AATTTTGAGTGAAAGTTGAGATGTGTTTTTGTGCAATTGTACAGTGAAAAGAAATCAATG
GATGGGTGAGGGTTGAAGTTGTCCGTCAGACCTTGCGGACGGCGCCGTCGCGGCCATGGG
AGGATTCGCGGAAAAACACGGCCGCAACCGCAGATTCCGAAACCGGCGACGGCGGGAGGA
AAATGCCCCACGATGACTCCACCTTTTTATCTTTTGCGGCGAAATTCCCGCATTACTTTG
GGCCAGAGCACGGAAGGCCGTGGCACACGGCCCATGTCTTCGGGAACATATTTTCCGCGC
ATCCTATGAGAAGTTTTGTTCCCTCAAAGAAAAGAAAAAAAAAAGAGAACTTTTGTTTTT
CTTTTGTGATGATGGCGGCCTCCCATGAGAAGATGTGATAATTCTTAAAGAAAAAATGGG
ATAGCTAGCACCGTGTTTTCATGATTTCATCCAACATTGGAATTCCAAACTATAGGTGTT
TTTCTTCTACTCGTATTAATCATTTCTTTTTGTTGGCTTATTCAATTGATGTTTTTTTTT
GCGAATTTATTCAACTGATGTTATAGGGTTTGAAAATATGAGCAATATACCAATGATCTA
AAAGAAATAAACAATACATATAACATGATCATTATAATAGAGACAAGACTACTCATGCAA
ACTAAATGAGAGTAGGCCACAATAACAGAAGCAAGACTAGTGAGGCAAACTAAAGAAGAG
TAGGCATATAGCATGTGAAAATGTGAACTAGAACATAACATATCTAGAATAGATACTAGA
CCAAGAAACTCTAGCATGATGTCGAACAGAAAAGATAGAAAACGTACTGAGCAGTGGGTG
TAGCATTGGCATTGACGTCGCCGGCCATGTTTTTGTAGTTGGGGAAGTGGTCGTTTGTTT
TTGTGGTGTCCATGATAAAGAATTCAGCAGTCGTGCGGAGCGCTCCTCGAAAATCTTATC
ACCCTTCTTCCGTACAAGACTCGAATTAGCATGATTTCGGAGGCCTATTGTATCGACTTG
CGATGCACACTACAAGTCGGGGTGGGAAAGAACCTAGCAATAGCTCGGAGTTTAGAACTC
GGTGGCATGAGGTAGATGTTGTTCTAGTGCGTATCTCCGAAGAGGAACAACCTCTCTTTT
ATAGGTACAGGAGGAGGAGGCGAAGTGGAAGCGGTGGGAGATAAAACGGAGAGACAAGAG
GCAAAACAAACAGGCAGCGGCCGTTTAATCTCCACTGCAGCAAGAATCTTTTTAGCTCCC
ATGCGACCTTTTGTATACCGGTCATGCGTGACAAAAATTTAGACAACAGCTCGGCTCATT
CCTGCAACCAGCTTCGCATCATGACGAAGCGTAGCAAGGCAGGCAGCGGAGTAGGAGCGT
GCGTGAATGTCTCTCTTGTTATGTTGCTTATACATGTGGAAAAACAATCTTCCTTATAAA
GAGGTCCAAGTCCTACTCAACTAGTATTCCCTCCATTCCTTTATATAAGGTGTATTCGTT
TTTTCATAAAATTCCACAATGTAAGGTGCATTTCTTGTAAATCCTTGTAATTTCCTTATT
AGCCTTCTAGAAAAAGGAAAGTATCTCTCTCACGATTGTGTATATCTTTAGTTGTATCAG
AAAAAGGAAACTATATCTCTCTCGATTGCGTGTATATCTTACTTTCCTAGACTCATTGAT
TTACTTGCCACTAACCAATAAATTTGTCAAGGGTAAATTT