morexGenes - Barley RNA-seq Database

Contig contig_1567050
Source Contig contig_1567050
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1567050 (8154 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1567050

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_14019	1	1701 bp	None	Available	Available	None
MLOC_14018	1	293 bp	MLOC_14018.1	Available	Available	None
MLOC_14017	6	3180 bp	MLOC_14017.2	Available	Available	LOC_Os08g42420.3, FRAME:+3, EVALUE:0.0, 13108.m04568 protein expressed protein
CDS Structure of MLOC_14019

CDS Structure of MLOC_14018

CDS Structure of MLOC_14017

Contig Sequence (8154 bp)

>contig_1567050 8154 assembly3_WGSMorex_rbca.fasta
CTTCTCTCTCATCCAACTCAACAAAAATATAATATTTTAATCCTTANNNNNNNNNNNNNG
TACCTTATTGTACTTGCTCTTATATTTGGACTGCCTTGTGTTGGTTTCGTACTATTTCAT
TGTCAGCGTGCCCCATTATTATTAGGAATTTAGTGAATCATATGTACTGTTAAGCCGGGT
CCCCCATTATTATTAGGAATTTAGTGAATCATATGTACTGTTAAGCCGGGGCTTGCCTTG
TGGGGCATCAGCCAGGGAATAGTTTTTTGTTTTGGGGGGCAGTGTGTCTGACAGGAAACC
AGGAACCTAGTTTGCTAATAGCTCGTAAAACATGAAGGCTTACTCCCTGTTAAACTGGGA
ATTTTCCTAGTGGGTAATGAATGGGACAACAGTAACGGAACAACAATTTCTTTTGTATTT
GTCACCAGCATAGTTACTGATAGCTTGAAAATTTGAAGGCTGGGCATTAGACAGCTAATA
TGTTTCAGACATAGTGTCCTCCGCCCATATTTTTTTATCTCTGTAAGCATACATCATCAC
TCTTTAGAGTTGACTGCTAGGATTTAGCTTATCATATTATGTTGGACATAGGTAGCTGAT
TCTTCAAGTGTTTCTAGGGAGATGAGTAGGCAGAGCCGCATGGGGAAGGTGGCTATATAG
TACGTATGTAGAATTATCTGAGAGAACATATAAGACCTACATATTTAGGCCTCCGTTGGT
TCATGGGATATAGGAATATCACAAGAATAGGGAAGTCATAGGAAAAGTAGTCTTGCTACA
TGTATGCATGATTTTGAATCGTTCTGGGAAAATTTACTCCGCAGGTTCAGCCAATCATCT
TAGAAGTAGGATGGTGACATTAGACGTAGGTTGAAGTATTCACCTAGTCCGCAGGTTCAT
GCCTACTAACGTTTTTGACATGCTTGCAGGTTGAGGACATTGTCCGCGCAGCAAAGCGAG
CTTGCTACAGATCATCATCAATGGCGGCAACCGCCTAAGCACAAATGCATGTTTTGTTTC
TCGGCCTTCTTCTTTGTTCCTTGTCCAGAAAAGATGTACCGAATCGCATAATTGTATCCT
CCAACTCGTGTGAGCTAATTTTGTAGATCTGCATGCTGCATTGTTGATTCCGATCTGTCG
GCGGCAGTCGGATGGCTGCATCCAGTTGATGGTTCATCCCTAGACATTTGAATCATGCAA
CTTCTGGAGGTTTACATTTGAGGGATGTCTCAATAACATGTATGTAACTGAATTACAGGC
GTTCACACGATTTTGCTCTGGCTTAGGCCGATCCGTTCGTGCGATCAGTATCCCAGAGAA
AAAGCTGAAACATTGAAATGCTTCCCGTGGCGGATGCTGGTGAAGTCACACGTGTAGGCA
ATACTTGAGTCTGAGATTCAGAGATTGACACCTGTGGCCGACGCCTAGATGTCGCTCATG
ATGTGTCAGGGCTGGGTTGCTGATTCTACAGTCTTGTCAGGTATAGTATATCCGCGGAAA
GCAACAGGTGGAGCGGAGCCCCGTAAAGGAGAGCTCCACCACATGCCAAGCAACTTGCAT
GCTGTGCCGTTGTGGCCTCATCATGGAGCATGATTCTTCCGCTGGAAACTACCGAATTTG
TGGCACACGTATGAGATAGCGATCGACCGTTGCTTTGTCTAATCTCTAGATAATATCATT
CCCGCTAGCCCATCATTGGTGGGTGGTGCTGTGGATCAGACGCCCGCTCTCTCTCTCTCT
CGTCCCCAATCCACACCCCCTTTTGGCCGCTGTTTCCGCTAGTGGACAATCCTGTGCCAC
GATTCAAATCTCAAGTGTCATCTTCTGTCGTGTTCAACATTACTTTGATCCATTGAGCCT
TCTATTGCACGGTACTGTAAAAGATTCTTATATCATCCAATGAATAGTCCATTGCTCAGG
TACCCTTTTTTTTTTTGCGTGCACTGGTACTACCAGAAAGCTGTTCTGAGGAAAGGAAAA
GGAAGGAAGCGAGAGAAAGATGATGAATCATGGACAGGGGAGTGTCATTGGGAAGAAATG
GACCAGGTTCTCAGTCGGATCGGTCTTAGATTTGATATGCCAAAGTAGAACGTACGGATC
TTAGCCGCCCAAGCAGTGGGCCAAGTCCACCGTTTTGAATAGTCTGCTTTTTCTTCTGTC
AAACTACAAGTAGGCCGTTCAAAAGAATTATTTCGTGTGCGGGGTTTCGATTCTCCTCGA
TATTGTCCGTCAAAAACATTCTTGTCATAGGTTTCTACCGCTTTCTTAGGACGGCGAGCT
TACAATTACTTCTCGCAATGACGAAATTTGATGTCAGGCACTTCAGAACGGTTTAAGGAT
TCAACAGCGAGTACTACGGCTCCATGGCACTAGTCTTTAACTCTTTATAGGCAGGGATGG
AGCTGCCTTATAGGCATTGGGGTCAGCTGAAATTTGAAAATCCTTCACTAGTTTAGTACT
TGTATCATTACTTTCTTCGTTTGTAAATATAATTTTTTTTAAAGTTTTTACTAGAAAACT
ACACACGGAGCAAAATAAATGAATCTACACTCTAATATATGTTTATATACATCCGTATGT
AGTTTTTTACTATTTTTTTTAAAGACTTATATTCAAAAATGGAAGAAGTAACATTTTTAG
AAAGATGAACCCAATGCCATGTACATGATCCCGTCAAACTATTTTTCTAGCTCCGTCAGT
CCTCCTAACCATCCAACCACGGGTTGATTTGCTTTGTTATTTTTGGTTTGTTTTGTAATA
CTTGGGCAAACTTTTGTAATAGCTCTATGCAGGACTATTTCTCAAAAGAAAAGGAAAATG
TAGTATGGGCAGCAACAGAATTTGTTACACAAGTCGGTACAGTAACCACCGCCGCTGAGC
TCAACCGCCAGACGATTCTGAGAAAACGGAATCTGCAAGACGTGAGGGGCCAGAACGTTA
GAAGCATAAGCCACAAAAAAGTGGGAAGACGCGAGAACATTTTATCTATCCACTCTTCTT
CTTCTGAAAGAAAAAAGAAGCAACCGAGCGAGAACAAAAGCGAAACCAAAACAGCCGAGC
TGATTGGAAACATCCAGATGCTGCCGCTGCTACTAACTCAGCCCAGCGTATCCCCTCCAG
AAAATATCATTTCTAGCGCCTAATCAAGGACCCTTGGTTTGTTGCTTCCGGAATTATATA
CATACCCACCACCATTGGAGCGAGCAGCAGGAGAGAGAGGGGAGGGGAGAGAAGAAGAGC
AGCCACAAGAGGAGAAGGTTCGGCGGAGGTGGACGTCGAGAGCCCGGCGGAAACCGCCCG
GAGCGATTGAGGCGCGGGTTGGTTCCCGGTGGACGGAATCGGATCGAAGCGGCCGTCAAT
CTCGGAGGACCCCGATTCGATTCGGCGGCGCGGGCCGTTCCGCTGCTGATTAATCCATGG
ATGGATATGCAGGTACCCCTTTGTCGCCGGCTTGTATTTCTGCGATTCCCGTTGCTGCGG
TGGGCTCTGCCCGTTTATCGGTGGGAAATTTGCTGCTCCATTTCGATCGGTGACGGTTCC
GCAATCCGCCCCCAAATTTGGGCCTCTCGTGCTCCGGATTTCGGCCGCTTCCGTGCTCCC
GATTTCGGTAGTTTCGAGGTTTAGCCCATGCACGCCTGTTTGCTCGGCGATTGGCTGACC
GCGTCTTCATTTGCGCCTTGTTTGGGCAGTATGGAGTGGAGTAGATAGCATTGTGATGGA
TGCGCAATCATTGGTTGGGAACTTGCTATTTCTATGCATTAGGCGGAAGCTGTAGAAACT
GACTACTTTGTTTCTCCTGAGAGCTAAATATAGTAACCGTCAGGTAGTATTGATTGAGCT
TATCTTGGTCATGTAGTGGGATTAATTGAACTCCCTTCTATTCGTGGGTTTAGTCATGTG
ATAGGATCAATTGAGCCTCTAATCAATGCTCTTCGATTCGTTTCTGCAGGGCTGTGAGGT
GATCTCCTCGCATGGTTCGTCCTAGGTCCCTGGTTGCTTGCTCAGGCTCCAAGTTATGTG
TCATCTCCAGTTGCCGTGGTAGCCAGGGGGGCATGATTAGTAGTGGCAAGATGGTAACCT
TGCTTCCAATGGGTCCGAGTCGGAAATGCTGGTGTGGTTCTGCCCTTCCGGTGGTGATTG
GTTCCAATTGATGGTTTGTCTATGCATTGATTTGGACACTGAAATGGCAAGATACTAAGA
GGGCCGTTGAAAGGAACTGGATAGGTGTACCGCAGTAGCAATTACAAATTGGGGGTCTTC
CTTCTCGCTGAGTATCAGAGATTGGTTGCCATGGGTTTACCCCAAGTTTCTTCAGTCAAG
GAGGATGTTTCTACAGGATCGAGGACGCCTGTGTCAAGCCCCTCACGTATCAACGGTGTT
GGTGCCTGCGATTTGGATGGGCTTCCTCGAGAATGCTCAAATGGCAAGGTTTCATATCGA
TCGATTGGCAATTTCACTAGACAGACTGCATCAGGTTCCCCAGATGAATCAAACGGGTAT
TTTAGAGACAGCCATGCGTTTGATGGACCCGCAGACTTCCAAGGATTCAGAATTGATGAT
TTTAGAGATGCAAATTCTAGATCTTCTCAAAAATTGCAGCAGCCTGCTGTCCATATGCCG
ACAACAAGGATTGTGGGCTTTGAATCAAACTGTATTGGAGGTCCTGATACAGCACAATTG
GATACAATCTGTCCATCTGTGGCCAGTCATAATTGTGGTTCACCATTTGATCAGCATGAA
CTTCAGGCAAGGAAAAGACTGCTGTCTCCATTGAAAAATGTGCTCTCTAGAAAGTTCCAT
GGTGATTTACTGAATATTGCTTCTGCTGATGCTAGGTTTCAGCATTCCGAGCCAGGTAAT
AAAATGGTAAACACCGGAAGCCTCAGTTGTTTTGAGTCACAGGCATGTCCGACCCCTAGA
TGGTCCAGTCGGACTTCAGAATTTGATGTCAATAGGATTAATTCTAATCATTTCACTGAT
GGCCCTTTACTTGGGAACAAGGAGTCATTATCCTATTATGATCATCTAGCTGCCAGTGCA
AAATTAGCACACTCTCCACTCTCATTATCTCCTCTCAGCCCTAGACGCATTCATAAAGTC
AAGACTACAGAATCTCCAAGGCATGTAATGAAAGACATTGAAAATGATTTCCTAGATTTG
AAGGAACAGGGAGGATTTGATGGAATTAGGATGCTAGATGTGTTAGAGGAAACTGACAGA
TTACATGATGAATATGATACTATGACCCCTAAGAGAAGTTCATGTAGAAGATATCAAAAC
TGGGGTTCTGAATCTTCACCTACGTCTCCGCGAGTTGGTTATGGACTTGGTTATGGACGG
AGTTTGAGTCTCCCTGCAAGGAGGTCACTAGTTGTCTCCTTTGAGGAATCCCTTTTGTCT
GGCCGACTTTCTTATGGAAAAGATAATCAGGTCTAGTATTTATTTCTGTTTATCATCTAG
TATATACTACAATTCCAGGGTATTGACTGTTGAATTTGATTCCTTAATTCTCCTGTGGAT
GCAGACAATTGATGGTTTCTTAGCTGTCCTGAATATTGTTGGTGGTAGCTTCTCTCCCCC
AACTCAGAAACTTCCATTTGCAGTAGCAAGTATCGACGAGGATAGCTCCTTATTGTACTA
TTCTTCTATTGATCTTGCTGGTAGATTGTCCACAAGTGCAACCAACAACAATAGCCCAAA
ACTCCAAAGAAGCCTTAGTAACAATGATTCAAGATCAGCAAAGAGTCGCTTACGCATCCC
TGCTAAGGGGCGCATACAACTGGTACTGAATTGCTTGACCCTTAGCTCATGATCATATTT
GTTCTTGTGCATTTTGTGTTGCAAATACTTTGTCTATATTAACCACCCCATCTTTTCTCT
ATCTAGTTAGCTTTATAATAATGAAGATACATATATGTCATTGCTTTTGCTTCAACAAAC
AACTCTGTATACTTTCTTGACCTGTTTCAAATGGCTAGGTTTCCTTTTCTCGCAGCACCT
GGTGTATTTGTATGCATATTTAAGCTACTATTTGAAATTGTATTGAGTTGTTGTATGCGC
TCCCATCTTGAGTTAAACAATTGCCTCATCAGGTTGTGAGCAACCCTGAGAAGACCCCAC
TCCATACATTCTTCTGCAACTACGACTTAACTGACATGCCGTCTGGAACCAAGGTACAAA
ATATTACGACTAGTTGACTACTTATCCTTTATATATTGAAGAAAACTAAAGGTTATTCTG
ATATTGGCCCCAAAACACAAATGTGCTTTATATGTACTAGTCCTTACTTGCTTGCAAGTT
GCAACTTCAAGCTATAACTTTTCCCCTTAGCTTTTAGCCTTACACCTAAGGAATCATGCA
CATAGTGTGTCCTCATGTTTCATGTTATCACTTAATCACTATATCTATAACCAAGCGGGC
TGCCTAAGGAAGTGAGGAAGATTGAAAGAGGGAGAAATAAGGCAGCCTACAAGCCGGCAT
GACATGCTAGAGTACATGGAGACTTTTAGTGTTTAGCAAGTGACCCACCTGGTTTTGACC
ATATAGTCTGTATGGACAACTTACGTCCTGAGTAAATCTCTCTCTCTTCCTTTTCCCCTA
AAAAAAACTAAGTGGGTTGCCTAAGTTTGAGATCAGGACACAGCACAGGTAATTCATCAT
TTAGTGCATACCTTAACTTGAAGAGTACCATGGCATGCGCAGAGAAATATTTTCCTTTCC
CCCCAAAGGATTTAGTCTATATAATCACATTAACCACCTTTTGTTTTCTCTATCCCTTAT
CTTATCTTATTTCCCTTGTGTATAATGAGACAGACGTTCATGCGGCAAAAGGTCACTCTG
TCTCCCACTGTTTCTCCCTCTAATATAGTGAAAGAAGAAAGCAAGACCAGTGACACAAAT
GTTGGCCCGAAAGCTCAGTGTGTCTCATGTGGAAGTGAACTTGCACAACGAGGAACTCTA
TGCTTGGAATGTAATGGAGCTGGTAGCCTGATAATAAGAGTTGAATCCAGATTATATATG
TTCAGTCTCTGATCATTCTTTTGTCTTTGCAGACTGCGGGCAGGGACGGACATGCAACTC
AACTGATGAATCAGGAAAGAGACGAGCAAACACGAAATGTTACTCATTGGGCACTGACAT
GAAGGAATCAGATAAACCCAGTTCTCTTGGGAATAAGCAAAACAATACTGATTCTGATGA
CTGTTGCTGTCAGATGGACAACGTCCACTCAGGTGCAAAGAAATCATGTTGTACGTCTTC
CAGGATCAACGACAGTTCAGGTGGAGGTGTGCTCCGCTATGCTTTGCACCTGCGGTTTCT
CTGCCCCGCCCCCAAGAAATCCTCAAAATCTATGCTACGCTGCAAATCCGATCCATCATC
TGTACCGAACAGTGGTAATACAGTGACCGAGGATAGGAGATTCTATCTCTACAACGATCT
TAGAGTTGTATTTCCTCAGCGGCACTCGGATGCAGATGAAGGAGAGGTAACACATCCTAA
TATCTTGAAAGTTTTTTACTGACAGCTTTTTTCCTGGTTTCTTTTTGACCGTCAGCTTGC
AATTTAGAAGGTCTATGCTAAAGTTTGTCATGAAGAAATAATTGCTCTCTTGTTGGTTGA
TCGGTTAAATTCGATGATTTAATCTGCTGATTCCATTTCTGTTGCAGCTGAAGGTGGAAC
ACGACTTCCCTGCTGATCCCAAGTACTTTGACATAAGCAACTGAAAAATTGCTTTTGCTG
TCATGTATAGCCTGTGCTTTGGCGCATCGATAAACGAAAACTCTGTACATATTTATTGTC
ACTAATTTGCCACCAGTCCCCAAAATGTACAGCTTTTATCTTCCAATAAAATGCATCATT
TAGTTGTTACTTTCTGTATTTCTGCTTCTGGCTTTCAAACTTGTCAGGGTCATCGGGAAA
GTGCTATTCTACACCCAAGCTCAAATGAGCTTGGATGAACAGTAAATTTGTATAATATTT
TAAAAATGTTCAAAAAATTATGATTTTTTTTACAGCAAACTTCGGCAAATGTTTTAGTAG
CTTGCAAAATTTCAGTATAAAATCACATTTTTTGAAGTCGTGGCAAAAAAACAAATTTAG
TGTTCTAAAATGCTTTTGAAAGTAGCATTTTCAGAGTTTTGATTTTGTTTTTTT