Map Locations of contig_1566945 (5703 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1566945

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13970 2 1221 bp MLOC_13970.2 Available Available LOC_Os02g17780.1, FRAME:-2, EVALUE:8e-152, 13102.m01986 protein ent-kaurene synthase, chloroplast precursor, putative, expressed





CDS Structure of MLOC_13970






Contig Sequence (5703 bp)

>contig_1566945 5703 assembly3_WGSMorex_rbca.fasta
GAAGTTATACGAATATTCATGCATATAAAACATCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTACGTTGGAGACGTATCAAGTAGCTTCCCTCAAATGTATTTT
CCTGACTTGGTTAAGGGATACCGGGATTCCTCATTTTTCCGCTGGGATGTTCTAGTCGGC
GATGGCCAGTCGGGCCTCCCGCTATACTCGGTGGAACGAGTGCAGTCAGCCCCTTCCTTG
CCAGTGTCAGAGAACGAGAAGGTAGATGTAGACATCTTGGTGATTGCCCTGGTCGCACTG
GTGCAGAAGTGCGTCAATGGAATGGACATGCGGGAGGTCTTGTTCCAACAGAGGATCCAG
CCCCTCCAAGCCAGGGCCCGCCCCATGTGGATGTACGAGGGGCCAAATGATAGCCTTTCG
GTGACCTCTGCTAGCCTCCAGATTCTCACTATCTTGGAAACCGAGCTTCTCCAAGACATA
TCGTCTTGCATGGTAGGGGATGCACTAGTCGCATTGTAAAAACCAAAAATTACACGTTGA
AGCAAAGAAACACAGGTCATGATTAATTATGAAAAAAATACTTGTCATCATTGTGCATCG
TAAAAATATTAAAAGTCTCGCCCAACTTGATGGGAAGAACCTATCGTTTTGCATGTGAGG
CCTGTAGCACATACCCCGATCGTCACTGCTCTAATCACACTGAAGGATCCTATCATCGTT
AAACATTTCCTGTGTTCGTGATTCAAAGATTAAAAACCGATGGCAGTTATACGAGGAACT
GTTGAACATGGGTTGAGTTTCGGTCTATCGAGGTTCCTTGAAAAACTCCAATATCTCATA
ATGTATATGGTGCACACTCCCTCACACTGATATGATGGTGTATGTGGTGGACACTCCTCT
TGACAGAAATTTTGACCGTTGGTGCTGGTCGCTCCTCCCTTTGTCCCTCGCGTGCATTAC
CAAAATGTGTAGCACATGGGGAAGAAGGATGAAGCGAACCCCACGACAATAGTGAGGATT
CTTCCTCTGATATTTCAACCGTCGGTGCTAGTCTCTTCATATCCCTCTCTCGCGCATTAT
ACGAAGGTATATATTGCTAGAAGAGAAAGAGAAAGCGACCCCCACGACAATAGTCGGGAT
TCTTCCTCTGGTATTTCGACCCACGGTGTTGGTCGCTTCCTCTCCCCCTCTCGCACATTA
TACCAAGGTATATATCCCGAGAAGAGGAATAGGAAACAACCCCCACGACAACAGTCGGGA
TTCCTCCATCAAGAACATACTGAAAGTCACACAAAGTGCTTTGACAAACTGAAAGTCAAC
CCTAATCACAAGTCAAATAACATTATATTTATGGGGTAATGACATAAAAATGGCCTATGT
TTTGCCGAAATCTCATCTAATTCCTGTTCCGGCAAATCACGGGCACTTCATGTTTCCTAG
TTAAGGTCATGCTGAAATCCATAATTTTTTTGGCAGGACCATTGCTAAAATATGTCATAT
CGAGCGCCTAAAATTTGCTGGAACGGAAATGTATCAACATTCCGGAAAAACATAATCAAC
TAGGAGGTGCTCCCTACAAAATGATACACACGTCGAAGGAGACAACATATACATGTGAAA
ATACTTAAAGGTATTTTCTACTCTATTACAAACTTTTTTACTGAAAATTAACTAAGCATC
AATTATATCCAAACCTAAGAAACAAATAACCAACAAATACTGGAAAAAAACTAGGGTTCA
TACATTTTGATATATACAAGGTCGTCTAAAATTCTTCCAACACATCTAAAGAACCCTAGG
TATCAAACAAAATTAAATTCAGAGGAGAGGGAGGTTCTCACGGTGGACGGGCCAAGGCTA
AGACAGAGTGGGGAGGGCTGGTGCGGGGGAGGGCGGCAGAGTATGGGGTTGTGCGGCCAC
GTGGGGAGGGTGGCTGCATGTTGGGGCGGGAGGCCATGTGGGGGAGGGCGACCGCGCGTG
GGGGTGGGCGGTCGCGCGCGCGGGGGCGGTCTGACGAGCATGGGGCAGGGCCGACACGAG
GGTGGGAGTGGAGAGGAAGAGAGTGAGGAGAGTGAGGGGCGCGGGAAAGATGATAACTGG
GTAAGGTACGACTTGAAAGAAGATAACTGGACAAGTTGGGCAAGAGAGGTGGGCCTCGTC
TAGCCGCGGTAACAGCGTTGGCCCACAACCTGTGCTACTGCTAATACCATTAGCAACAGC
ACTGGTTTCACGCCAGCGCTGCTACTATGGCTAGCCCGTGGACGTATGGTGTGCCTCACC
TATTAGTAGCGACAGGTACCTGGACAAGCACTACTGCTATATCTTACCAGTAGCGCATGT
TTTAGCCAAGCGCTGCTACTAATTAACACTAGCACTGGTGCTTTATCCCTTGGTACTAGT
AATATTCGACCTATAAGCTATTTCCTTGTAGTGTGAGGAGGATTGGCCATCGAAGGACCT
TGAAATCAACGCGTCTACAGTATCTAAGGATCTCTTCTACACTAGGACGAGATTTAGTTT
GGGCAAGTGTATGAAAACTGCAATCTAGCAAGATGCATGGATTTATGGGGGCACGATATC
CATATTGCGCCTGATCTTCTTCCATTCATGTGCTCCAAAGCACGGGCACTATGATGGTTG
CTCTCGAGGAAGGCAAATGGATAGGCGATATTCATGGTCAACTTTAATTACCGACAGTCA
CACAATTCTATATCTTATGGGAAGAACTCAACCATGTTTAGCCGAATTAAATAGTCGAGG
GTCAGTTCACCTAGAAGCTTGAAACTAACGGTAATTTCTCATATAGCCTGCCTACAAAGC
CTTGTTTGTAGGGCATGATGAATTGCCTGGTGCCAAAGAAGTGTAGTCCTCGCATGCATA
ACTTCAAGCTATAGTGTTTGTTTGGGTGATATTGCATAACAACTATTGTACTACATATAG
GCTAGCTCGGAGGGGATTGCCGCATCAACCATAATGTTCGCTTTGTTGCAAGGAACCAAA
TAACACCCAATATCTATTGGTGCAGTGCTCCTTGTCACAATCGGCCGGGTATGATGTTCT
CAGCAATTTCAATCTACAATGTTTGACTCTATCAGTGGATTCGAATATATGCAGATGGTT
GTTTTATATGGACATGGTCACCCTGCCAAAAGGCGTGCTATGATTTTCTCAAAGGCCATC
TATGGCTTGAGTGCAATGTTAGGACCTTTGACAGAATTGCATCAAGCTTGGCGAAGAAGC
TTGAAGTGGTGGACATGACAAAGGAATCATGTTGAGTAGTAGTTATTTAGCAATGTCTTG
CGGGGCCTTTCGGCCATGTAATATCTTCCTGTAAATATAAAGCTCTTCTCCAATCTTAAT
ATAAAAGATGCGCAAATCTTTTCCAATATGAGAATTGTCACTTATGCAACCTTCAACTAT
CTAGCATTCTTACAATGTTTCTTTGTATGTACAAATTTCACTTCCATCCCCACCATTGAA
AGATTTTTCAAAAGACATGTTCAAAAATAACTTTTGAAACATGTCTATCAAATATGCACT
TAGGGCAATTAGCAACATAGTAACAACTTTTCACCACACTCCAGAATGTCTGCTTTATGT
TGTTACTTGCTCTATCATCGTAAGTTTGCAAAACATTTTGGGCAAGTTCTTGCATGCCCA
CCTCAATTTTCTTTTCCATGTGTCTTGCCATTGCCTTGTTCTCCTGAGTATCCTATAAAT
TGCATCACTTTTTCAATGGTTAAAAATACCGAAGTCATATTTTGAGTTATTAAAAGCAAC
TTGTAGCTAAAAGGTATAAAATATATGAACCAACTTACAATAGTGATCATAAATATATTA
CATGTTCACGTAATAAAGTACTCTAGTTTTTTATGAAAACATGTGGCTCTTTTTCCAATA
GAAAGTACCTTTTGTGGTTGGTATGTATATGCAAAAATTGTATGGAGCTTATAGCAAAAA
AACGTTGTACTGACAAATGAAAAGAACAATACTATCACCAATTATCACGTGGTTCAATAC
GAAAATGTCAAGAAAATTAAGCGTAAAAGTTACCTGTGAAAGTAACATCTTGTGGTGAAG
GCTGTCACAAATAGAGGATGCAAGTTGAATAAACCAATTATTGTCCATGCTATTTACCAT
AGACGATGCTTCACCAATTCGTCCAGCACAAATCTCAATAACTTTAACTAGAAGCAAACA
TGTTTGTTTGTCATGAACCATACATGACCCTGCTTCAATAACACTTGTATCGTTTGTGCC
ATCCTCTCTATTTATCAGTTGAGTCATCCATTCGATCCACTAGAAGATCAAAGATATATA
TTAGAATTTTATCCAAGAGAGACTGTTGCATTTAATAACTCCTAGACATGTGCAATTGCT
CGTTTAACTTACAACACAACGTAGCAAATTGTTGATGTGGATGGATCCTTCACCAACATA
TTGCGCCTTTTGTGCCAATAAATCAATAAGCTTCTCAAGTGCCCCCACAAGAATTTCCAC
CTTTGCATCTCCTTTAATACTAGATGCACAATTTGTGTCATACGAAGCATATTTGAAATG
AGGAAAGTCTATAGCAAAAGGGTACAATGACGAATTACTATATGGTAGTGCTTAAAGATA
TATGTGCCATTTTACTAAGTAAAAATGTGTTCTTGTACTTATTTAAGTATGAGGATCTTA
ATTTCTACAAAAGAAAAATGTATTGCTCTTATGTACCTTAATTGTCCACTGGTGGAAATC
ATATACCAAATTACTAGTATTAGTCAAAAGTGCTCCAATTAAAGCATTCAAATATTTAGC
ACTTGAGACGTGATGATTTAGATTGTATATAGGGATGCTCGGTTAATGTACTTACCATGA
TATATCATTATTTCCTTCAGAGAGGTCACCATGCATAAACCGTTCCACCATTTTATTACC
TGACAAATCGCTACAGAGATATTTAGAAATAATGTTGGCCATCACAGACACTCTGGCCCA
TGCAAGTCGCTCTATGGCACGACTTGGTTCGAAAATGCAAGCGGCAGCTAGAAAATAAGC
CCTCAATACATCTCTTGGAGCCACCCCAAAGGCCTCGAGGCCATTCTCTGCAAACCACCT
ACGTACATAGAATATACATGCTCATGCTAATGTGAAGGAAAACAAGATGTAATTAACAAA
ATATTACTCAAGTTTGATGCATACTTTTGTAGGCCATGCCACTCAAGCTGATGTTGGACT
TGGCAGCGATTGAAATCACGCTTTGCCAACTCGAGATAGGTGTTGTTGTTCACAAATGGC
ATCCTGCCAAAGCCATTCAACATACCACAAATTGGTAAGTATTACATTGCCTTTGTTGTG
CAACGAACAAACTAAAATTGTTTGAAATTGAATGATGCACCATCTTTTATTGAACGGTCA
CCGGGGGGAAACTGGATCGAAAACCTAACTCACAGTTATTGGCTGATGCACTATCGTAAA
CCTTTTCTTTTACCTGTAGAGTGTCTTCCCAATCCAGACATCATCATCACCGCCATAGTG
ATCTAGGTAGACTCTTGCTTCTACACGTGGCAAGCTTGCATACCAAGGAAAGTCCAGTGC
ATATTGTACCTATGATCACATACAGAGCGATTATACTCTTGTAAATATCCAGATAAGGTT
ATTTTGACGCACGTCTCCCTCCCTCCCTCCCAACCCTAGCCGCCTCCCCCTCCCTTCCTC
GCC