Map Locations of contig_1566884 (10908 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1566884

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13944 1 773 bp MLOC_13944.1 Available Available None
MLOC_13943 7 2704 bp AK251275.1 Available Available None
MLOC_13945 6 2777 bp MLOC_13945.5 Available Available LOC_Os01g06900.1, FRAME:-1, EVALUE:0.0, 13101.m00686 protein verticillium wilt disease resistance protein Ve2, putative, expressed





CDS Structure of MLOC_13944






CDS Structure of MLOC_13943






CDS Structure of MLOC_13945






Contig Sequence (10908 bp)

>contig_1566884 10908 assembly3_WGSMorex_rbca.fasta
TATTTTGTTATATTATAAATGTTGATATTTTGTTCTATAAATTTAGTCAAAGTTTATGAA
GTTTGACTTTGACCAAATCTTATATGCGGACTAAAAAGAAACGGAGGGTGTATACACAAT
AGCAACCTAGACTCATCTCCCTCCGCCACTCTGGCCGACGAGGCCGTTGAAGAAGGAGGA
AAGGGGAGCCGAGGGAACCAACGCGACTCTCAATGGTGTGTGAGTAGATAAGAGAGAAAC
GAGAGAGGAGAAATGAGCCCCTGGCATGAAAAGATCGATGCATCCATTCTGTTGCAGCAT
TTATGCGGAGTTCTTATAATTGAAGAAAGAAATTGTGATAAGTTCAATCGTGCATCGCAT
CACAGATCATTTCCCACACACATGGCTTCGTCCGAAATGGCAATGCCATTAGCGGCCGTG
CTCGTCTCGACGTCTTTATTCTGCCCAAGCAACATGATCTCGACGTTGGACACTGCAACG
CAACTCGATTTGAAAGGCATCACATTCGACTATCTTTCATGTCTCCTTTATTCCTCATGG
TTGCTTTTGGAATCTCAGGGATGCTATGGAATTCGTTCTTTCGGTGCTGATGTTGTCCAC
ACGCATTCACAAAAACAGGCGTTCACTGTTGAGAGAGAATGCCGGTGTGGCACATGTGGT
ACATCGTTTTCATCTTTCTTGTTTTGTGGTCCGCCATGCAAGCCGTGGATGTGCAAACCT
GTGGTTCCAATTGGCGTCTTCATCAAATTGTAGTTTTGCACCCGAAAAAGACCACCATGA
CAGGAAGAATTGCACGAGGATGCTAGCACGTGTGCTACCGGCCATTGAGGTCCATGGGCT
CATTACCGCTTCAATGTTCGCAAAAGATGCTTGTCATTAGCCATTACCAACACCAAGAAG
CTCGTAACCAAATAAAACCAAGAGAAAAAACATAATCAATGTCTAATTAGGCATTACACA
ACAAATGAAAAAAAGAACTCAGCTTAGGAATGCAATGCATATCTTCATCGCACAACCTAG
AAAATAGTAGCCTTTTTCCCCGCAATAAATAATAATAGAAATAGTAGCCTTTAGAAAGGA
GATGAGAAATTATGAGTCTTCTAATGATATTAAGACTGGAAAAAATGCCGCATGTGAAGG
CTTAAAACTTCTCCCACGTAAAAACCAAATTATGCTGTCAGACAGGTTATCTTAGGATGC
ATTCTTAGCACACAACATTTGACGCGGCACAGAAAATGTTTACTAACGGGTAGCGGCTCA
AACATTGTAAGATACACATGCCACCGATAATGGAACCAAGTCTTTGAAAAACAAAACGGC
ACAAGAAAGAAAATGAGCACTGCAACTTCTATGCGGGTGCAGGTTACTATTGGGAGATGC
AAATATGCATTCATGACCAAGGAATCAAAGGGAACCATCATTCACATATTTTTCCTTTTA
TATACCCATAAGGCGAGGCGCAATGCGACTTCATGAAGCATGAAGTCTTGAGGTTGGAGA
AGACACACAACTTGGCAAGGCGGAACAGTGAAAAGAGGAACCAAAGGAGGAAGAAACCTA
CGCTTTGCTTTGCCGAGGCAACCAAAAAAACCATGCACCATGCACCATGCACCGTGTAGA
TGAAGGATCGGTTGCCTGTTGTTTTATCTATAAAGCGGAACGAAAACCTTTCTCGATGAG
TAAATTGCAAAAAAACATTATAATTGGGGACGCGAAAACAGAAAAACGTCGCCATTCGTT
TTATTTTCAACAAAACACCACTATTGTACTGACAGTTTTTAAAAAACAATGATACGCTGA
TTTCGACCGTTTGAGTGGAAAGCTGACGGCTGGGTCCCACCTCCAAGTGATAATGTGGCA
AGAAAAACTGATGTCATCCGTATGGACCGTTAATTTGATGTGGGCCCACCTGTCATAGTA
TCATCTCTCTTCATCCCTTTCCCTGGCATTCCGCCGAGCACTTTGTGAGCTCGCAGGAGA
GCTCGTTGCTGGCAGCGTCAAGATCAGGAAGCAGGCCTGCCGGGAGGAAACTAGACAAGG
GGTTGATGCAGAACGTCGACGTGCAGAACTCCTGCACCTTCAAATCTGCGTCGGCTATTG
GCGGGGGCAACACCATGGTCGACGGAGGCGGCAGCCGAAGTGCGCAATTAGGGCAAGGAG
GCTCAGGGCCAAATGGGTCGGGAGACATGTCTAGAAGCTGCGCGAATTCAAGGCAGAGCT
TATCGTGGTAAGAATAGGCAATGAGCTAGTCGGAGTGGAGCGCATCAACGACGAAGCCGT
CGGTCGGAGCCAAGGAAGAACGGCACACATGCGTCCCATCTGGGGCATCCGTGTCGATTC
CTTCCGCGGGGAGTCTGGGCATGCGTGCGGCCGTGTTTGAGCCGCCGCGCCGCGCCACCA
CCCGCTCGGCCAGCCGCACCCTCGCCGCCCCGCCGCATCACCATGAGCTAAGGAAGAACA
TGACACGTGCGTTGTCTGGGTCTTCTCGTGTCGATTCCTTCGACGGGGAGTCTGGACATG
CGTGCGGTCGTGCTTGAACCATCGCGTTGCGCCACCGCCGGCACAGCCTGCCGTGCCTCT
GCCGCCTCGGCTAGGGTTCGACCGCTTGGTTGGGCCTTGACAGACGCCGGCTAATGGCCC
GTCACGGGCGCCGTCTATCCTAGGACACGTGGCACCTTACAGGAGGGCCCATCGGTCAAC
AATCCACTCAAACGCGGCAAATCAACGTATTGGTGTTTTGTGAAAACTGTCAGTACAATG
ATGGTGGTTTTTAAAAAATAAAATGAATGATGACAGTTTTCTTTCTTCGTGTCCCCAATT
GTGATGGTTTTTTGCAATTTTCTCTTTTTTCGATAGGATCCGTTGCCATGGTACCGCTTG
TCTAGCTATCTTGTCACAAACATACTCCTGTAGCGCAGGGTGCTGAACGGGAAACGAGCA
TCAAGTGGGCATAAACTATGTCTCTGAGGTTTAGCATTGACCAGCCCTTCTTCGTTGTCG
CCGCCCGATTTGCAATCAGCAATCAGCACTTCCATGTCTCCCTTTCCCCAATGTTCCACC
ATCGCCATGGCTGTGCCTGGCCCTTTCTCATCCCCCTCCTGCTTCTGCTTTTCCCCTTTG
ATGAATCTTCTCTCTTGCGTGGAGAAGCGGCGGTTGCCGACAGCCACAGGGTCGTCCTGT
ACCCGGAGTCCGCGACGGTCTCTTCCATCGTGAGCAGCAAGTACAGGACCGCCTACCATT
TCCAGCCCCCCAAGAACTGGATCAACGGTACATACATATGCGCTCATCTCCACACCTTCT
TTTCTTCTGTTTCTCCCATCTCTAAGCGCCAGGTCCTATCCTCCACGTTTCTGAGGCGGT
TTTCCTTTGGTTTGCTGCCTGAAATGTGTCGCTCGACATTTTGACTGTTAGTCTGAACCT
TCACTTGATTGCATTGTAAATTAATGTCACCGTGATACGATAGCGGTACCTAATGATGCG
TCGCTTGTCTGTATGGTCTGGAGAAGCTTACTTGTCTGATTGTTTACCTTCATCATGATC
ACCTGCCTTCAATTTTCCCCCTTGGCGTCTGCAATGTTAGAAACATATATGTAGTGATGT
ATTTTAAGCATTTGGGTTCTGAATTCTATATCTAACACTTCTTCATCATTGTATCACACG
ACATGGAAATCCTCGCCACGACAATCATACAGATCCAAATGGTACGTAACCATGTATGCA
TTTGGGGTACTTATTAAAGATAAAATCAATCATAGCTAAAAGTGGATAAATATAATGGAT
GGCTGCATTCATCAGGACCTCTGTATTACAAGGGCTTGTACCATCTCTTCTACCAGTACA
ACCCCGGCAGTGTTGTCCCGGGCAACAAGACCTGGGCCCACTCGGTCTCCATCGACCTCA
TCAACTGGCTCCGGCTCGAGCCGGCATTGGACCGGACCGAGCCCTACGACACCAAGGGCT
GCTGGTCTGGCTCGGTCACCGTCCTCACCGATGACCGGCCGGCCATCCTCTACACCGGCG
CGGATGACGTGAAGAACCAGGCCCAATGCATCGCCTTCCCGAGTAACAGCTCCGACCCAT
ACCTCAGGGAATGGACCAAGCCCAGCAGCAACCCTGTGATCCGGCCGGATGGGCCGGGCC
TGAACCCAAAGCAGTTCAGGGACCCGACGACCGGGTGGACCGGGCCGGACGGGCGGTGGA
GGATAGCAGTTGGGGCCGAGCTGGACGGCTACAGTGCAGCACTCCTGTACAAGAGTGAGG
ACTTTGTGAGTTGGAGCAGGGTTGATCACCCACTCTACTCCTCCAACTCATCCACCATGT
GGGAGTGCCCCGATTTCTTCGCGGCGCTGCCCGGCAACACCAGCGGACTGGACCTCTCCG
CGGCGATCCCGAATGGCGCCAAGCATGTTCTCAAGATGAGCCTAGATTCCTGTGACAAGT
ACATGGTTGGGGTATATGACCTGGAAGCCGATAAGTTTGTGCCAGATAATGTCGTGGACG
ATAGGCGTCTGTGGCTGAGGATCGACTATGGCAATTACTATGCATCGAAGTCATTCTTCG
ATGCAAAGAAGGGGAGGAGGATCATATGGGGCTGGGCAAATGAGTCGGATAGTTCGTCGG
ATGATGCCTCAAAAGGTTGGGCTGGGATCATGGTAAGTAAGAAGATCTGCCCCTTGTTTG
CCGCCACTGTTAAGTTTCAGGAACTAACGATTTTGAGTGGTTTAGCATACATATACCACT
GTGACATGTGTATCCTCGTTTGGCAGGCGATCCCCAGGACTATATGGTTGGACAGCGATG
GCAATCAGTTGCTGCAATGGCCCGTTGAAGAGGTCGAGTCCCTTCGAAGAAATGAAATCA
GTCATCAAGGAATAGAGCTGAAAAAGGGTGACATGTTTGAGATCAAGGGGACAGATACTT
TGCAGGCTAGTTCCTTGCTTTCTTTACACAAATTCTTACTACTTGATCTTGTTTTAATTT
AACAACAAAGTGCCATGTGTCAGTTAAAAATCAGTTGGGTCTTACGATGATTAACCAGAC
GTAATTTTCTTGGAATAGGCAGATGTGGAGATAGAGTTTGAGCCAGGAACCATGGATGGG
GCTGAAACTTTTGATCCTTCCTGGCTCTTGGACACGGAGAAGCATTGCAGGGAAGCAGAT
GCTTCAGCTCCTGGTGGCCTGGGGCCATTTGGGCTTGTGGTTGTAGCCTCTGATAACCTG
GAGGAGCACACTGATGTGCACTTTAGAGTCTACAAATCACAGCACAAGCACATGATTCTT
ATGTGCTCTGATCTAAGAAGGTTAAACTAATGCTTATGGATTTGCTTTCTTTTTCTTTTT
TGTATATTCTCTACAATATTCACTGAAATTGATACTATATCAGAATTTCTCACTCTGTTC
TACATAGCATCAATATTCAACATAAGCAAGAGAGTATTTCTTTTTCCTTGTACAGATCGT
CCCTGAGGCCAGGGCTGTACACACCAGCCTATGGAGGCTTCTTCGAATTTGACCTTGAAA
AGGAAAGGAAGATATCTTTAAGAACATTGGTTAGGCCTTGTGTCTCCTTTCTCCCCATCA
TATCACTCATGTGTGATAATTAGACAGAGATGCTCTAACAGCCATGGATCTCCCCTGCAG
ATTGATCGTTCGGCGGTGGAGAGCTTTGGTGGTGGCGGCAGGGTCTGCATCATGGCTAGG
GTCTACCCGGCCACGCTGGTCGACGACAGAGGCGCTCGTATGTATGCTTTTAACAATGGC
ACGGCCATGGTCATGGTGTCACAGCTCAAGGCATGGAGCATGAAGAGGGCACATGTGAAT
GTGAAGAAGGGATCAAGTACTTACCCAGCAGAGCAAAAGGCTAACAGACAGTAGTGCAAA
GATGTTACTCCCTCTGTAAAGAAATATAATACCCTTTAGATCACTTACAGAGGGAGTACT
TGATTGGCCTCTAGTCCATACTATTGTGAAATGTCACGAATGTGGACTACTTACTACTCC
CTCCGTTCCCAAATATAAGTCTTTAAGAGGATTCCACTATAGGCTACATACGAAGCAAAA
GCAAAATGATGAATCTACACTCTGAAGTATGTCTATATACATATGTATGTAGTCTTTAGT
TGAATCTCTTTAAAAGACTTATATTTAGGAACGGAGGGACTAGTTACTAGTCATATCGTT
ATGGTGCAAAATTATGGTTGTGTGCATTGCATGAAGCTGAGGCCAGGAGGATGATATTTT
ACAAACACTGTACTTGTTTATGTCAAAAGTGCAAAGGCATTCTTAGCACTGGTGCTTCAC
ATTTATATGCTGTTTGAGTTGACCTATTGTTCATCTTATATACAACCTACATGGTTGATC
CACTCCAAGTACATATATCTTGGAAAATTTTGTTTGGAGAAAAGGAGGAAAATACTCGCT
TTTTATTTTTACTCCGCATCACTCCGCTTGTAGGATGATCAGGGGATGATAAACTCCAGT
TGTACTTTTCATATACCGTTCTCTAAATAGTTTCTGATCTTGCACGTCCTTTTATTCATA
CTTGTTGCTATACATTGGAGATGGAGGCAAACGTGCAAGAAATTAACCTGATGCCGATGA
AGAAAATATTAAATTAACGATTTGTAATCCGATCATTTCCTCCAACTGATTCTATTGGCA
CCTGCCAAAGGGATATTTTTCTGCAAGTTGAACCTCCCAGAATGATATATGAAATGAAGT
GTTTTATGTCGCCATATGAAATAAAATGCAATACATATTATTCACAATAATGTCACATAT
TTGATTCATCAATCTTTGCAATCCATACAGTGAAATGAAGCATCAAATACTATGTACTGT
TTATCTAAAAAATACTTTCTACCAAGCAAAGAGAATTAAATAAGTTTTCTCATCTAACAA
GTACCCCCTCTATAAACTTCTATACGATCATTTAGATCACTACTAACGGTCTTATAAAAG
TTTACAGAGGGAGTACAAATTATGAACACACAATATATTCCTTTTCAAGAAATGTAATTA
TAAAATACATATTTCTGCTAAGCGGCATAGCACATGGATTTACCAATGATTGCAGTCCAA
TCCTTCAATGTGGAAAAACATTCGGAACGTAATTGCCGATGCAAAACCCACTCCAAACCC
CAGGCCGATAAATGTGAAGTGAAGGATGGCATCAAGTCTATCCTGTGGTTCAGGAGGGGT
CAATGCACTTGAAGCAGTCTCACATTGTTTAGAGAGCGGACTTCCACATAGGCCCATGTT
GCCTTCAAATGAACTATTGGGAAATGACAAGAACTGGTTGCCCTGAGGTATTCTTCCGAC
CAAATTGTTGTATGAAAGATTCAACCAAGCAAGAGAGGTTAGAGAGGTCAGCAATTGCGG
GATTTCTCCTGAAATCTGGTTCCAAGAGAGGTCCAACGATTCCAGCTGAGACAAGTTACT
GAAGCTAGATGGCATTTGTCCTGTGAAGTTGTTGGATGACATATTAACCCCGTGAAGCGA
AACAAGATTCCCAATTGACTCTGGAAAATGACCATCAAATGAGTTGTCTGAGAAATCGAT
TGCTTTGAAAGTAGTTAGAATCTTGGTGAAAATAAGGTCGGATCCCTTAAGTGTGATGGT
AACAGTGTCTTTATAAAATCCATGTGTTGTGTTTGTGTAATATCCTAAAACTCGTCCCTC
CTCGTTGACATTCTCCATCATTGCTTTGAATTTATTAAACCATCCTTTTGGCAGGTGTCC
ATGGAATCTGTTGGAACCCAAACAGAGTATTTGCAAACTAGGGAACTGGTTGATGGTTCC
ATGGTCACCATCAAGATCCTTTATTGTTCCATTGAGCTGGTTGGACCGTAAGACAAGGAC
CCGGAGCTTTGGAAGAATACCCAACCAAGACGGAAAGGAACCGCGGACCTGATTGTTACC
AAGATCAAGAAGCTCTAACTCTTGACAATTTGACAATGATCTTGGTAGTTCGCCTTCAAT
TTGATTTCTGTTCAAATCTATTGTTCGAAACTTGCATTCCTCTGTAATATTTTCAGGCAG
CGTCCCACTGAATTGATTTTCTCTCAACTTCAACACAGCTAGTTTCCCATTTCCTATAAG
ACATGATGGGAGTGATCCACTAAAATTGTTGTAAGACAGGTCCAAGATATTGAGATGGCT
TGCTCTGCAGATGGAAGATGGTACATGACCGTTTAATTTATTCTTGGACAAATCGAGGTA
GAAGCTTCTAATATATCTTCCAAAGTCATGAAGAATGGAAGAGAAGTTATTGTTTGAATA
ATCCAATACATTCCCAGACATTGCAGTTACCGGTATTGGTATGCTGCCTTGAAGCCTATT
AAAACTGAGATCAAGAACAGTTAGGCGTGACATATGAACAAGAGAAGGAAACTTCTCCAA
AGCAGTGAACATGTTGCGCGAGAGGTTCAAACACTCAAGCTGGTCCTTCCAATTCCCCCA
TACCCAACTTGGTATAACATCGTTTATTTGATTACTTGAAAGGTCAAGAACGGAAACTTT
ATCTAGATATCTCAGTGAACTAGGAAATTTTGTGAGGTTGCAGGATGCAAGGTATAAGTA
GCAGATGTTAGGAAGGGAATTTAAAACGTCCACTTCTTCTTCCTCGACAATGATTGATAG
CTTGTTATTGGATAGACTCAGAAAATACAGTCTCTCCAACCTCCAGAAAGAGCTTAGTTT
GATTGTGCCTGACAATCTATTTGATTCAAGGTTGAGGTATTTAATATGTTTAAGCTGAAG
GATTGATTTGGGTATATGGCCAGTTAACTGGTTGTCGTTTATCTCAACCTTAGACAAGGA
TGAATATATAGGGGAAGGAATGTCTTCAAGATGACCAGAAAGTTGATTGTTCTTTAGGGA
AAGCGCTCGCAATGCTGGAAGAGCGAACAAAGATTGTGGAATTTTCCCTGCAAGAAAAAG
GGCGAGTACTAGTCAAAATATGTTCCAATGACAAAATAGCAGTCAATTTTTTGTAGAAAG
AAGTAACTTATCCGTCAATTTCTGAAAATCATGACTTTTAGGTGTGATACTGTGTTCATA
TACTTTTATAGTTGATTTGGCCTATATTTCTAACACACTGAAAGAACACTAGTAATGCCT
GATTAGGATCTCACCGACAAGGTTGTTGTTCCCGAGCCGAATAACTTCAAGCCGGGTCAG
GTTTGCGATTGTCGAGGGAATTGACCCAGAATGCCGGCAACCTTGGACGCCCAACTTTGT
CAACCTGGTAAGGTTTCCGATCCATGAAGGCACCGGTTGCCCGGCGTAGTTGCAATTTTC
GAAATCAAGCAGCGTCAGCTTCGCAAGAGTGCCGATCTGATCAGGCACCGGGCCGGTGAA
ATCGCAACCGTGCATGCGCAGATGCGCCAAGCCCGTCAGATTGCCGATCCAAGAGGGCCG
TGACCGAGAGAAATCATAGCCCTCGAGGCGCAAAGACGTCAGCTGCCTGATATCGCCAAC
CGAAGATAGCTCCGGACCTACCGGATCCCGGGAGCTTGGCCCGTGAAGCTCCAGATTGTT
CAGTGATGGGAGCTTGCTCAGTGAAGAGAGCCCCTTGGAAATGCACGCGGTGCTGAGGCT
CAAGCTCTTCAGGGAGGTGAGGTTAAGGAGTGCGGGGCCGACGCGGCGGATCGTCGCATC
GACGGCACTGAGGTTCAGGGAGATGACCCTTCCGGAGGCGGTGTCGCAGGCGACGCCCTC
CCAATGGCAGCAGTCCTCTCCGTCTCGCCATGACGGTAGGTTTGCATGGGTGAAGGAACG
TTTGAGGTGGAGGAGGGCAGAGGCTTGGTCTGCGAGGCAAGGGACGGCGGCGGTGGTGTT
GGCTGAACTAGCGTGCATGGAACAGGAGCATAGGAGGAGGAGCATGAGGACGTGGAGGTG
CTGCAGGGTGTGAGTAGCCCCCATTTTGCTGCTGGCTTGCGGCTTCCAATGGTGTAGGAC
AGTAGGAGTATGTACCCTTTATAGAGTGCAAATAATGGGAACCATTTTGCATGGCTTGGA
GTTTGGACTTTGGGTCATGCGTGCGTGCGTGCATGCATGCCGTGGTTGAAAGGCTATTTG
GTGAGGAAAGCGTGGTGGTTGTGGTGAATGGACTCAGCAGGCAATCAAGATGCATGGTTC
CTCAAGTCCTTTGGCTCATGCTTGAATTTCTGTAGGCATATTCTTCAGTTGCTTTTCCTC
AGGCATGGCAAACTTAAAGCCCAACGGTAGAAACACTTGCTAGACTAGCAGAGCAGGCGG
GCGGGCAGAAATGCCCCCATCATTGTGTTTTGTTTTTCGACCCATTTTCGTGAACTTGAA
AGCAGAGCATAGTTGGTTTCCAAAGCAGAGCATAGTGGTTTATTTGCAGGTAGCTGGAAC
AGGAACACACGAAGCTAGAATAAATGTGTAATGGGGTCATCTCTATGACAGTGGGGTCAT
GTTCTATAGATGTACAGTTATTAGTACTTAGTTAGTGAAGGTTTTACTAATTTCATTGGG
GTCAATTGACCCCACTGCTAACAAGGCAGCTCCGTCCCTAACACCATGTTTTGCCCCTTG
GGTGTTGGTCTAAGGAGAGCCTCAAGCAAGACATCTGGAATGGACAGAGGAGAACTTTTC
AAAGGTTGAGCTGTTCTCTGGACTGCTTTCCGGAGTCAAGTCACGCAACCCAACCCATAA
GGTATGCTTGAACCGGCAAGATTCGACGCATACCTGCCACTGAATTTCATGCTCTTCAAA
CGTAGTAGCTCCCGCATGACTCTTCTTTTCTTGCTGTTGGTAGCAGTTTGTCATCATTTG
CCTGCGTGCGTCACTCCAAACTGTCATATAATGCAGAAAATTCTCGGTCCAACGAAGGGG
ACAGGTTACCAAGAAACAATTTATTCAGTACTCCCTCCGTCCCAAAAT