morexGenes - Barley RNA-seq Database

Contig contig_1566790

Source Contig contig_1566790

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1566790 (5942 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_1566790

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13912	5	1824 bp	MLOC_13912.4	Available	Available	LOC_Os06g49530.1, FRAME:-3, EVALUE:5e-174, 13106.m05306 protein OsFBX206 - F-box domain containing protein, expressed

CDS Structure of MLOC_13912

Contig Sequence (5942 bp)

>contig_1566790 5942 assembly3_WGSMorex_rbca.fasta
CTACAGCGCCATTTCACTGCTGAAGGGCCGGCGCCGACATTGGTGTGACAGAGCAGGGCA
GCTACGCGTACGAGGTGGTCATACCTTATAACTATAAGGTTTATAATTTTCTTTCAAGTT
TCCAATTTATAAGGTTTAGAATTTTCTTTTAAGTTTCCAATTTAAGACAGCCGAAATATC
CTTTTTATGTAAATTATGTTCGCTTGAATTTCGACCAGTCTGTTGAATGCGGTTTGAAAT
GTATGCAGATAATGTTAGTCGAGCCGCGTGGGTCAGCATTGGGAGCTCCATCCAGCTGCA
GCTATCAAGAAACTTACCAGCGCGCCATCCAATCCATTGTTACGCCAGCACCAAACATAG
AACGGGAAGATAAACCAGAAGGTGAAACACTTGCTGATTTGTATGCTAAAAGAAACAGTA
ACTTAATACATGCCTCAACTACTTCAGTGAATAGGTTACAGTGCCCACAAATGGGCACTG
TTGTGAGGATTACAAGTGGTCAAGCATTTATTTTATTACTAGGATACATCTCTCATAATT
TAGGAAACTATACAACAACATATCAGCTCCCTCGACTGATTGAAAAGCATACCAGCATTT
CTGCTGATTTTGCATTCATAGGCACATCCCCAGAGGTCGAGATCAAGTAAAGTGTAGTAT
AGAGCTTCCTGCATCTTATTTCCCTTGCCAACCAAAAACTTGCTCTCGTGTAGCGAGCAC
ACGGAGTGAAGGTCTGAAGGAGGTCTGAAGGATCAAATGACCGGGAGAATATCAGCAGAA
CCGCAAAGCGTACTCAAGTTCCTTCTCGTCGGCACAGCTGTAACCCAACTGATAAGCACG
TGCTGTTCACAGAAGGAAAAAAAAATGGATCAGTAACTCAATGCACTGTAATGAATCAAA
CACAAACAATGAGATTGCATTTACAATACAGGAGGACTATTTACCACACTACCAGTATTA
GTAGTCATATAGTAATATAGAATGGAATTGCAACCCTTTCATTTCCATACTGCTCTTCTT
TGGCTGTAGCCAGCCCACTTGCGTAAGCACATTTTAGATAACCAAATATCACCTAGTAAC
TACGCCACCTTCTGCAACACTATCTGGCAACACTATCAAACACTCCATAGCAGCAGAAGC
GGGCATTTATATATTTCTAGCTAGTACGATTTCTAAATCGACAGCTTGATGTATGACATG
CATGTAACATGAAAAATGCTCAAATGTACTTAGTTCATAATCCGACATAGTAACTCCATA
ATATTCATATTTGCTATAAGAATAACGCAACATGCATGATGGAGGAATATTTCTCAATAA
ATAAAACTCGAATTAGTACCAAATCGTCCAGATCCCATGAATGGCTCTGCTTCATCAGTC
ACACCGCCTTGCTGCTGATCCTAAAATTGCAAACAAGCAAAGCTTAGTGATAAGTACGGG
ACCAGACAAAGAAATTCAAATAGAAATGATGAACTGTTGGCCTCATCAACTGAGGATTAT
AAAGACGGATTCGCTAGGATAAGATCATTCAAACCCGAATCAGGCACATTCTTACAATAT
ATGGTCATTGCAAAGTTTATGGATAAAAGAGGATATGCCATGCATTGGGACTTACAGTAT
CACAAGTGTCCCACTCGTCATCAGGACATAAAAACCTCTCAAAACAGTGCCCAGATATCG
TACAGACAAGTAACCCACTAGTTTGGTCCAAGACAAATTCACGACAGGCATCATCGCAAA
CTAAAAACAGCAGAAAACAACCATGTCAGGCATAAACAATTATATGTGACAAGGGAGTGA
GAGGAAATATAAATATACCATGTACACGACCAGTCTTCTCACAAATATAAGCATCACCAA
TCTGCTTATAGAAGCAAGTACTTCCGGAGCAAGAATGCCCCTTGACTGCATCATCAGTAA
GGCCTCTGCGGCTTTTCCAACTAGACACCTGATCAGCTACTGTCTTATCAAGAACAATCT
TGTCGTCATTCACCTTTAAAAGTAAGACAAGAAAGGTTCAAGTTTAGGCAAACAAAAGAT
AATTCTTTGGAATGTGAGGCTGAAAGATAGATTGATGAAGAGTAAATTTTGCAGAAATAG
AGATTCATACTACTATGAAGGATCTACATATTTAAGGAATTTTTTCATATACTACAGATT
TACAGGGCATTTTGTCACAGAACTACAGGTTTTCTGTCACCCTAACTTTCAAGACCTCTT
GTGCAAAACAGTTTTTTTGGGGGGCCTAACTTTTTTTCTGCCCACATCAACAAAATGAGA
ACTTCAGCAAGTAGATTGAGAAAACCATTTTGTGATGAGGCTTGCTTACAGGCCTGGTAC
ATCAGGGCTGTTTGGAAGAATTTCAGTCCACCATAACAGCTATAGTTTTGTGATAAAAAC
AGCCCCTAAATATGTAACAGAGTGAAATCGTTTCTCTCCAAAGTTTATACACCAAACATG
TAGTTATGTGAAACTTACACATGAAAGAAGAGATAAAAAAAGCTAAAAAATCAGTGATTA
CTTCTGAGGGAAGGGGTGCTTGACTCCTTTTTGCAGCCTGCATCTGGATATAGTACTCTT
TGAATTCTGTAGGGGTATATCTCACGAATTCAACCATATCTTCTCTGTCTTGCTGGTGTT
AAGAACAACAATAACATCATTAGCAAATGCATATGTTGCAACATGAAAATGAAAAAATTA
GCTCTCATGACTAGTCAAAACAGAATTGGCAGGCATGTACATTCAACTGCTTGTGTACAT
GCGCTTATTCTGGAAAAAAGGTAGTTCAAATTGTATGGAAATATTCACAATTAATTAAAT
GGATATGGCTTATGAACTTCGAAGCTAATTTTTGCGATTCAATGCCCATGGCTTCAATGA
GATCAGACTAGAAGTATTATTTTAAAAACAGGTGCGACTACCTGAATATAGAGGCTCTTC
CAAGCGCACTCCCTGAGTTTCGCGTTAGAGGTGGCATTAGAGGACAGGCCCCACCTCATA
CAATACCTTACAAAATCATGAAGGGATAAGAAACGTTAGCCAAATTCACAAACTGGAACA
GAAGGGCAATATTTAACTACAGTAGCTTACAAGCGGCGCCAAAGGGTCTCGTCAGATGCG
GCGGCGTTCATGAAGCGGCAGACAAGGGCACACGAGATGAGGTCCTCCGAGGAGAGGAAC
TTGAAGATCTGCAGGAACAGCTCCGGGGGGACGTTGGTGAACATGCCCGTGTCAATCTGA
GGCGGCCCCTCCGTCAAAACCTTTCCTTTTCCCTTCTCCTTCCTCGCCCTCTTCTGATGC
TCGTCCTCGCTGCCGCTGCCGCTGCCGCTGCCATCTCCCTCCGACAGCGAATCTTGCTTC
CTCTTACCGTTCTTCGCTTCATCGTTCACTCCCGTCTCCTTCTCCTCCTCGCCCTCCTCC
AGCTGCTGCAATCGAATCCCCAATCAGGACAATATTCGCTAAAAAAAATAGAGGGAGAGA
AAGAGAGATCGAGCGCACTTACGTCGAGAGGATCTTCCTCGCTGGATCCGGAGAGGATCT
CGAATTCGAGGAAGCTGGCGAGGCCGTCGACGTCTACGTCCTCTTCTTCCTCGCCGCCGC
CGCCGCCGCCGCCGGCTTCAAGCTCACCTTCCTCTTCCAGATCAGGCTGCCCTTCATCAG
GATCGGGTTCCGCGGCCGCCACGTCGCCCAGATCCCTCCCGTCGGCCATGCTCGTCCTCC
TCTTCGCCGTCCACCTCGCCACCGACGGATCGCCGCTCCTCCTTACCCTGGACTGGAGAT
ATTGGTGCGGTTGGACGATGCGTCACGTGAGCCACCAGAACGCAGCTTGATGGGCTGAAT
CATACAAACGGCCCAGTACGCACACCTGTTTGTCACAAGGAGAATTTGGGCTCACATCAA
TGGTTGATTGGGCTATTGTGACGGGGGCTGAGGATCACGGGACCTCCTATTCGCCGCTCT
GTGCGGCACCCAGTCAGGGCTTCGCACAGGGCGACCCCCGACTGGTCCGGCCCAGTAGGT
GCACAACAATTATAGTTTTTTTTCCTTTTCTTCTTTTTTTTCTGAAACTCCAGATTTTTT
TTTCTGAAAATGTAGAACATTTTTATAAAAGCAAAAAAAATGATCGAATTTGAATAACAA
TTTTTGAAAGTACAGAAAAAAATTTTTAATTCTGGAACACTTTTTAAATTCCGGAACACT
GTTTCAAATTCCGAACATTTTTTCAAAATCTTGAACAGTTTTAAATTCCGGAAATTTTTT
TAATTCCTGGAAAAAAAATTAAATTCCAGAACATTTTTAAAAATCCGGAACATTTTTATA
AAAGCCAGAACATTTTTACAAATTCCGGAACTTTTTTCAAATTCCTGAACATTTTTTCAA
ATTCTGGAACATTTTTTCAAAATGCGGGACATTTTCACAAATTCTGGAACATTTTTTCGT
AATCTTGAACATTTTTTCAAATTACGGAACATTTTTTCAAATTCTACAACATTTTTTGAA
AATTCATAACTATTTTGAAACAGAAATAGAAAAAAACAAACAAAAACAGAAACAGAAAAA
ACAGAAAAATGAAAAAAAAACGGTTCAGGGAACCTTCTAGAAGTTTCCCAAAACCAAAAA
AAAACCGATTGAAACCTCTAGAAGGTTTCCAAAACCGGGCAAGGCTCCCTCACTACCTCG
CTACCTGGCCAAGCCCAATGCCCCGCCCGCTGTGTGCGAAGCCTCGACACCGTTTCGCAC
AATGCGGCAAATAGGATTTTTCGAGGATCACCCCGGATTTTTTTATTTTCGCCTAAAAAT
ACTGATTTTGTCTTCTTGCAACAAGATTGATGTTGGTGCTAAGTTTTTTTTGTATAAACA
TTGGTGGTAATTTTTGTTTATGGGTAACATTGGTGTTAAGTTTGTTTGTCGGTAACACTG
ATGGTAAGTTGACAAGAACTCTTTAAAAAAAGAAGACGAATATAGTTGAGTGAGTTACGG
CTTGACGGTTGTAATCATGTTAGGATGATACATTCAACATGTGCAGCATATTATTTTTTA
TAACCAAAGCCTCCTTTATTCAGTCATAAAAATCATTGCATCGTTTATAATCAAGGAAAT
CACTGCATCGGGTGTGGATTCCAGGCAAGTATTTGGAGGAGAAAATCTAGCTACCCTAAC
TAGTTCATGAGCTACGTGATTATTCTCTCTATTACAATGATCAAAGATAACATGATTAAA
TCTAATAACATAAAATAACAGTCGTTGAAGACAACACCGGCCACTAAAGAAGAATAACAT
TTTTGTAATGCTGCGACCACCTCCACATTGTGTGAGTTGATCTCAATTTTACTGCAACCA
ACAATTCGAGCTAGATTCATCCCAAATCTCATAGCAATAGCTTCCGCGGTAAAAGAGTCA
AAGCATATATCAATTTTTTCATTTGTTGCTGCAATGAATTTTCCTTCATGGTCTTGTAAC
ACTAGTAGCAAACAGGGCTTTGGTTTTTGCCAGATCAGAGTAACAGTCCCAGTCGACTTA
TGAACCAGGACTAATGCATGCATTAGTCCCGATTCGAGTGGTCACGACGCGGGCCGGGCC
TCGGCAGGCACCAGTCCCGGTTCGTCTCGGACATTTAGTCCGGGTTCGTCTCGGACATTT
AGTCCCGGTTCTAGCCACCAACCATGACTAAAGGGCATGTCTCCTCGCGTGACCCCTTTA
GTCCCGGTTCGTGTCTGGAACTGGGACAAAAGGTCAGTCTTCAGTCCCGGTTCTAGACAC
CAACCGGGAATAAAAGAATGCCTTTATATATGCTCGACATGCCCGCTCACTCCTCTGTTT
TTTGGCCGGCCAGTGTGTGGAAGGTATGTGCTACTCTGTTCTCACCTCCTATGCACATGA
GGTGTTCGATGAAATGCCTGAACCACACTTAAGCTTTCTCTCTTCTCCAAGCTCGACCTC
CA