morexGenes - Barley RNA-seq Database

Contig contig_1566739
Source Contig contig_1566739
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1566739 (7968 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1566739

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13887	3	1215 bp	MLOC_13887.2	Available	Available	LOC_Os06g14670.1, FRAME:+2, EVALUE:7e-56, 13106.m01628 protein ODORANT1, putative, expressed
MLOC_13888	1	306 bp	None	Available	Available	None
MLOC_13886	1	2855 bp	MLOC_13886.1	Available	Available	LOC_Os02g49992.1, FRAME:+2, EVALUE:0.0, 13102.m05678 protein expressed protein
CDS Structure of MLOC_13887

CDS Structure of MLOC_13888

CDS Structure of MLOC_13886

Contig Sequence (7968 bp)

>contig_1566739 7968 assembly3_WGSMorex_rbca.fasta
ACACATGACTTGAGGTGCAAGGAAAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNAATA
CTAATACTTCCTAACAGCATGGAGGGCGCTAGTGTGAAGAGGGTTAGTGCAAGTTGCTTG
GCAAGGGATGTGACTGGGGTGTCTGATGCCAGTCTGGCAGTCTGCATCCGTATTGCTTTG
GCACTTCACTTTACTTATTGGGCTTTTCCTTGCTAAATGGGCTGTGATCTAAGGGGACAG
CCACACAGGGGAGCTGGATAGTGATACATTCGATCTCGAAATTTCATATCCTCGTATTTT
TCCAATGCATCATCCGCATTTATATCTGGATATTAAGTCCCCATATTGTCAGGATCCAGA
TTTGATTCTGATTCGATGCAGATATTTATTCCCACATTAGCTTTCTCTGATACCGACATC
AGATAATTTGTATATCCGGTGCCAGTTTCCACCCTTATCAGTATGTTGCTCCGAATCAGA
GGGGCTGATGCACATATAGAAAAACACTACAAAGTTAGAAGGGGGTGCCCATCCTCAATC
TTCTGGCTGATACATATATCTCTTTACTTTCTATGTTTATAATACCTTGTAGGCTTGTAC
GATGGCATATTATGTTGATTTGGATATATTTGACTTCTTAAACCATATTTCTGTTGGTAT
ATTTTGCCCTTTTGGGTTTCTGTGCAAAAGTTATCGAAGCTTGATTCACTATAGTTGTGT
TGTGAATGCAGCTATCCTACCTTTTTCGATGACATCGCTGCCCGCTTGCTTCCAGTCATC
CCACTGATAATTTATAGGCTTATTGAGAATGATGCTACAGATATCGCAGACAGGGTTCTC
GCATTCTATTCTACCTTTCTCGCTTTCCACCCACTGAGATTTACATTTGTGCGGGATATT
CTTGCATACTTCTATGGTCATCTTCCAAGCAAGTTAATTGTCCGGATCCTCAACGTGCTG
GGTGTTAGCACCAAGGTAAACCTCTGTTTACTCTTTTCTGGAAACCCTTCTAGCTGTCCA
CTTTTATTCATACTAATGGTGATCATTTTACAGACTCCTTTCTCGGAATCCTTTGCTCAA
TATTTAGGGTCTTCAAATTCTTCTATTTGCCCACCACCAGAATATTTTGCCAACCTTTTG
CTAGGCCTTGTTAATAATGTCATACCTCCTTTGAGTAGCAAGTCCAAATCAAACCCAGCA
GATGCTTCTGGCGGACGCACAAATTTCAGCAAGCCTCATGCATCTACGCAAGCTGGTGGA
AATAGTAACACCGATGCTCAGAGGGCATTTTATCAAAATCAGGATCCTGGGTCATACACA
CAGCTTGTTTTGGAAACAGCAGCTATTGAGATTCTCTCACTTTCTGTGCCAGCTTCTCAA
ATAGTGTCCTCTCTAGTTCAATTAATAGCTCATGTACAAGCAATGCTTATACAGTCTAAT
ACTGGTCAAGGAATGTCTGCTGGTTTGGGCCAAAACTCTGGGCTGCCAACCTCTCCTTCA
GGCGCGGGTGCCGAGTCTGCAGGTGCTAGCCGAGCAAACACTTCAGCAAGTGGAATCAGT
GCTAACTTTGTTTCTAGAAGTGGTTACTCTTGTCAGCAGTTGTCTGTTTTGATGATTCAA
GCATGTGGCTTCTTGCTGGCACAACTCCCACCAGAATTTCACATGCAACTTTACTCAGAA
GCAGCTCGAATCATAAAAGATTGTCGTTGGCTTTCTGATAGTTCGAGGCCTGTGAAAGAG
CTTAACTCAGCTGTTGGTTACGCACTTCTGGACCCAACATGGGCTTCTCAAGACAGTACA
TCGACAGCCATAGGTACCGTAAGACATTTCTGGTTTGCTGTGTTTTTACCCCCTTTCAGC
CTAAACATTTGGGCCCATTCAGCTCAGTGTTACTTTAATACACTTCTACCATTTTGTGCT
ATGGTTATATGTTTGTTCTGCCTTGATTGCAGGTAACATTGTGGCCCTTCTACACTCATT
TTTTAGCAATCTTCCTCAAGAGTGGCTGGAATCTTCACATACTGTCATCAAACATCTCCG
GCCAGTGACTTCAGTCGCAATGTTGAGAATTGCCTTCCGCATATTGGGCCCCTTATTGCC
TCGTCTAGCCTTTGCTCGACCTCTATTCATGAAGGTATGCTTGGTTTTCCTTTGGTACGT
CCTAGTTACTGAAATAGTGTATACAGCTTTTGGAACAAATCTGTATGATTATATGTTGCA
CATGTAATCTCAATAATCAAAGCAAGATCATGTTCTACCACTTTGGCATCTTCATGCCTT
CTATTCTGTCTTCTGTTTTAGAAACTTCAAACTGAAAAATAGCATTGGTAACCTCTTTCC
AATGTACTTTTTGGCTATTTTGAAGACTGCAATCCTGTAGTATTTTTTGGCTATTCTGGA
GTAGTATTTTTTGGCTATTTTGAAGACTGCAATCATGTAGGAATGTTTTTCCTCTCTATA
TATATGTCTGGAACGGGGAATGAATTTATAGGATTACTATGGTTAATCGCACTCGAACTG
TTCCTCTCATGCATTCACACACAATTTTTAAAAGGGATAGGCGTTAATTGTGCGTTTAGC
CACCGCCTTGCACTTTTCTGACCAAAGCGCACACTTATGCGCAATTATGCACACATTAAG
CGCGAGGTGTTTTGCTATAGCCTAGAGCCTAGGCTGCCTTTTTAAACTATAGGCATTCAT
ATAGGCGCACGGTCGTATATCATAGGCCCTACACGGCTACACTTGTCTGATTTGCTTTGT
TGTGTCTTCAACACAATTGAGCTATAAGTGTGTCCTTCCTCTCTGAAGGAAATAAATGAA
CGCATGTTATGATTGTTCCCCATGACCCAATGTTTTCATCCATGGGCGGAGCTTCATGCA
GATTGCAGGCCAAAGGTGGCCAGGGCCCATAACATCCCCTCTTGCTATATCGCTAATTTT
CATGATTTTCATGCTAACAGGAACAGTATTTCTCCCTGCTCCTCTGCTGGCTTCACCGGT
GGTCCGATACATTGTTGTATGAAGTAGAGTTTATTTATTTTCCTATACTAATTTTCTTGT
GTTGTCACGATCTGCAGACACTGGCTTTGCTGTTCAACGTGTTGGGGGATGTGTTTGGGA
AGAACTCTCAGGCCTCGCCTCATGTGCCGGCATCAGAAATCGGAGACATCATCGACTTCC
TGTAAGATACTCCTAGTCTTCCCTGCTGAAAATTCTCCAGCATGCGACTATACGTGCCTT
CTCATTCTGGGTTCAATCGTAAATCCGCTGTATAGCTTATCATACGAGTTACCTCATTTT
CCGCCCACCAAAACAGGCATCACGCTGTCATGTACGAAGGTCAAGGCGGCCCTGTCCAGA
GTACCAGCAAACCTAAAGTGGAGATACTGACATTGTGCGGGAAAGTGGTGGACATGCTTA
GGCCTGACGTGCAGCATCTCCTCTCCCACCTGAAGACGGATCCAACCTCGTCGATCTACG
CGGCGACCCATCCAAAGCTAGTGCAGCAACACCCATCATAAGGTGGATGACGTAGAATAG
TGTACACGCCTGAACTGCTGGGCCTCGGCTGATCTCGCTGTACAGGCCTGAACGCCAAGC
AGTCTTAACCGGTTAACTTGCTGCCAGACCGGAACCTGGAGTTTGTCACAACGGTCAGGG
GCAGATTTCTCTATTGGATCTGTGTTGTGTAACCCATATATATGTAGCAGTGGTGTAGAT
TGCGATGTTTATGATCTCCTGTAGAAGTTAACCTGTCTGTCAAAACATATGTACTGTCAG
GCTCCGTGCAGCCCTTGTGAGTGGTGGTACCAGTGCCTCTTTTCCTTTGATGCTGCAGTG
CAGGACACGGCTCGTTTGGTCGATGGTCACGGTCAGGCGTTGCCCTTCTGACACCGACCT
GAGCCGAGTAAGGAGCGCATTGCATGCTTGCAAGGTCTGTCACGGAGCAGGCGCCAAGGA
CCGATGACCCTTCTCGCCGGTGGGCATCAGACGCTGGTGTACCGTGTTCTGAACCGTGGG
CATCGTCGGTGTCACAGTGTCCCGCAGTGTGCATGACAGCGTCTCCTCCGTTACATAGTC
CGCACTAATGTGTACTGCTGACCGCGAGCAAGTTCACCAGTGTCCGCTATGCCTCGTAAA
CATCAGTGGTTACTCCTCTAAATTGTCAACAGTATACCCTGGTTCCAAATCCCGATGTTC
ACATGTTGAGTTACGCATTTTGTGTGAAAATTCAAATGTTTCCGAGCCTCCCACGGTTCA
TTCAGCCTGTTTCTTTTCCGAAGATAGATTTTTTTTTTTGTACTTTTCCGAAGATAGATG
GTACTGCCGCGGTGATTAGCAAGCAAGGTCCACGTACGTACCTACCAGGTAATCCATGGC
CCGTCTTCTCCTGCTGCTAATTTGAGGCCTCCTTTGGTTTGCCTTAATTTTGTTCTAAAG
GTAGGAATTTCGTAGGATTTTTTTTGAAGCCCTTTGATTTGAGGGAAAATCTAAGGAGAA
GCGTCCCACCATAGCTCTTTCATGCGACGGCTTAGATAGCCTCATGCGCATGTAAGAATC
TTCTACGTCATGATTACATCATCACATTAAATGTTTATTTGAATTTTAAAAATGATTTAT
CTCACGGATTAATAATTTGACTGGAGATTCGTCTTCACCGTTAGGTTCGTCTCGATGAGA
CCTTTAAAATAAGATCCCATGTTGACATATTTTGTTGATTTTTTTCGTCCTTCCTAGTTG
CTACATTTATGTCATCATAGTTGTCATCTTACAGATGTGTAGTTATCATAAAATTATACA
TAGTTATCGGGATAATAATTTTATACTTTTTAAGTATTGCAGTGTTATGTGAAGCTAAAA
ATAGTTATTAAAGCACTAACAATAAGCAAATAAATGCATGAACCAGCACAAGTACAATGA
ATCAAGTTTTTTAGTGGGGTATATCGACATTCATAAACCCGGTTACCAAGTTGATTTAAT
GTGATAACTATGTGATAAATAATGTGACAAATAAGTGATAGTAATTTAGCAAGTACCGGC
GAAAACAAAAGTTATCGAAACATATCGACATGGGATCTAGTTTTGAAGATCTCGTCGCGA
TAAAGACAGTGGTGAAAACGAATCATTAGTTGAGATAACGGTTTGAGAGATAAATCTTTT
CTAAAATGCAAAATCAAAAGAATATGTAATGATGTCATGTTGCATGCATGTAAAAATGGA
TGGAAGAGAGTCGCCGCATGAAAAGACTAATATGCGGCGCCGTTCCCTAGTGAAGTCTTT
GATTTTTAGGAATGGATCTTATTCCTATGTAGGATAGAAACCAATCATTTACATTTTAAA
ATAAAAATAAAAACAAATTTACTAATTCTTATCTAGATGAGAATTAACAAAGTCTTATCT
AACCCTCACACATTATTTGAGTAATCAAATAAAGTATACAAAATAAAAGACCTACACGAA
TCTTCATAAAAATCAAGTGACCTATAAGTTGGATGTGACTTGATTAAGTCTCATCTAGAT
GAGCGCTAGACACATTCAATATTTAGCCTAGGCTCGATGAAAATATTCCTATCCTATGCA
TCAAATAATGACATCACTTTCCCTATGACTTCCTATGGGTTTCCTATTCACATGATACTC
CTGAAACTTGGGGCAATCTGGGGATCTCGATGTATGTTCACGTCGACTACATTTCCATTC
CACCGGTACAAACTTGGTGTAAAAATCCACAAGTTTCAGGGCCACCCTCGGTTCATTCGT
TCAGCCTCTTTCCTGTAGATAGATAGACACCGCCGCGGTGATTAGCAAGCAAGGCCGCTC
CACGTACTCCCCTGGTAATCGGTGGCCCGTCTTCTCTTGCTGCTAATCCGTGCACCGCCT
AGCACTCTACATGGTCCGTCCACCCGTGCGTGTGAGGCCGGTCGATGAGAGCAGAGCAGA
GCAGAGGCCGGCTCACACGTACCGGGGCTCTGCTCGCCACGTGCGCGTGGCCCCTTTCCA
CTTCCGGCCGCACCTATTAATCCCCCGCTACGCGCCTCCGCTCCCACATTAAGCCCAAAC
TCCTTCCCCCTCTCCTCTCCTGGGACTGACCGATTCCCCCTCGAGACTCGAGCCAGCCGC
CTTCTATCCCAGCTATCTCACTCACTGGTGCTCGTCCGGTTCGATCGACAGAGATGGGCA
GGCAGCCGTGCTGCGAGAAGGTGGGCCTGAAGAAGGGCCCGTGGACGGCGGAGGAGGACC
AGAAGCTCGTCGCCTTCCTCCTCTCCCACGGCCATTGCTGCTGGAGGCTCGTCCCCAAGC
TCGCAGGTATTACACTCGTGTGCATGCATGGCGACGGTTCGGCCCGGCCGCTCTGCAAAC
GCATCTGTTTGGCCTCAAATCAGTCGTGAGTTCGTGGCTGAGCCTGAGCGCGTGCATTCC
TTGGCAGGGCTGCTGAGGTGCGGGAAGAGCTGCCGCCTGAGGTGGACCAACTACCTGCGG
CCCGACCTCAAGCGGGGCCTCCTCTCCGACGACGAGGAGAGGCTCGTCATCGACCTCCAC
TCGCAGCTCGGCAACAGGTGCGTCTGTCCTGCTCGATCGACGACGGGGGGTACGCATGTT
CGCGTCGTGAATTCTGTTTTGGTGTTTGACTGCGCCGGCCCCGGACAGCAGATGGTCCAA
GATCGCGGCGCGGCTGCCGGGCAGGACGGACAACGAGATCAAGAACCACTGGAACACCCA
CATCAGGAAGAAGCTCAAGAAGATGGGCCTCGACCCCGTCACGCACCAGCCCGTCGCCGC
CCGCCCTCAGGACCCGCGGCGGCAGGACCCCCACTGCGACGGCAAGGCCTCGTCCCAGGA
ATCGGCCGGCTCCGGCGCCGAGGAGGAGGCGCCGACGAGCGGAGAGCCGAAGCAGGGCGC
CGCCTGCTCTGCCTCCGTGTCGCCGTCCCCCTGCTCCTCTTCGTCCGCCTCGGCCTCGGC
CTCCGTCGCCACGCCCGGCGGCGCCGACGTCGACTGGCCCGACCCCCTCGACCTCTTCCA
GGTCGACGCCATCATCGACATGGACTGGGCCAGCATCCTGTCCGGCAGCGGCGGCGGCGA
CATTGGCGTCGATCTCTTCGACCAGTGCTCCGACGTCGGCTTCGATCAAGAGGTGTGGAT
GTGATCCTGACGCTAGCGTTTGAGGGTTAGAATTAGATTTGTGCCAGGAACACCGAAAAC
TCCTTTCACCTCTTTCTTCCTCTAGCTGTTTTTCTCTCACTCTCACTCTCACTCTCTACG
TGCTCTGTTTTCTTTGGTATCTTGGGAGAGAATTTGTCCGTGTTCATGTTCATGTTCATG
TCCATGCATGCATGCATACTTGTTGATAAGGAATGAGAAAAATGGCGAGTGTGGTTTGTG
AGAATCCGTGAGACCAAGAAAGTGTCAAGAAGCGGTTCACTTGATCATCAATCACGGTAT
GATCTTCAGTTTGACACACACCGTGACACGCTCATGCACACGCACAAAAGAACAAACAGC
CCCACTCACCCCCTATAAACATAGTATTTGATTCTTTTTTTTTTTTTGAAGGGCAAACAT
ATTTGATTCTGAAAGCGAAAAGCCAATCCTTTTGTCAAAGAATTTTTTTTTGTTTTATGA
ACATGGTTGAATAGTATTTGTGGATGCACGCGCCAATGATGGACTGCGGCAGAGACTCCC
TGGAATGAAAGCTCAGTACTTCCAGGACCAGTTTGGAAGTGTGAGGAATGCTTTAGCACT
AGTAGTGTAGTGGAGTATTTAATTTCAAGATGTCTCTCGCTAAGGGCATCTTGAATAGTT
TGTAGTTAGTTTGTTGATAAAATATGTCATGTCATCCATCAATATCTTAACATACAACTA
TTTTAATAGATAGTATATCTAGTTTGCTTAATAGGATGTGAGATAATAAATAAGGTGCTC
TCTCATTCTACATTGAAGCTTGTGCAAGGGTGTTGGTTAATTTACATA