morexGenes - Barley RNA-seq Database

Contig contig_1566561
Source Contig contig_1566561
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1566561 (7400 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_1566561

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13798	3	3322 bp	MLOC_13798.2	Available	Available	LOC_Os04g48950.1, FRAME:-3, EVALUE:0.0, 13104.m04997 protein fringe-related protein, putative, expressed
CDS Structure of MLOC_13798

Contig Sequence (7400 bp)

>contig_1566561 7400 assembly3_WGSMorex_rbca.fasta
CAAATGATTGGGAAAGAGCATTTATTATCAATCTAACCCTCTCATCCAAACACCTCTTGG
GTTAGAGTTAGTTCAGGGTTAGTTGAGGGTTAAAATCTAACTCTAACCTCTAACCCGGTT
AGAGTATCCAAACAGGGCCATCACCTTCATTATGCTCGGGGGATGGGGGCTGGTAGATTT
GGTCGTCCCTGCTGCCAGAAAGCGTGCCAAACCCCTACACATGCTGTCGCCGGACGTGCT
TTCGCGTTTTGCCCGTCAAGGCCGAGGCAAGCCACGCCGGGTGCCAGAAACGAAGTAAAA
ACCGACGCGCTGACCCACAATTTGACACACGAACACAGCCCCACACACCAGAACCGTGAG
GAAATCCTCCTGTTGCCATCCCATCACCCCGGCCCCCTTGTGAGTGTTTGCCGAACGCCT
GGATCTGGCCACCAAAGGCTGGAACCAAGCTTTCCCCAAGTCCAAATCCAAGGTCCCACA
ACACACACCACCACGCCTTTTAGCACAGCGAACCTGCATGCATGCCCTGCCACGTCCCCG
TCAACTGTGTGGGAGATGCAGCGGTGCGATGTATAGGAAGTCTAGCCAAAGCTTCGAGTT
CTTCTCGTGCCTGGTGACTCGTGAGGCTCAAAGCAGCAGCACGGTAGGCAGGAGATGGCC
AAACGAGGCCCTTGTTTGTTATACGTACCTCCAGCAAGAATACAAGAAGAGAGAAAAAAA
TGATATTGAATCGTCCTACAGTATTTTCCTAACAGGCTAGTCCGCTAGACTACTTGGCTG
AACTCGCCGTCCCTGCATACGCCCACGTCGATGGTCATCGTCTTCTTCCCCTCCTTCCCC
ACCTTCGGCGACGACAGCACTCTACAGCAATTCCTCCTCGGCGACTGCACAACATCCGTG
TGAGCTATATACGTCAGTAAACAAACTTGCCAAAGCCAATAGTATAAGCAATGTTTCGGC
ACACATCAGCAATCCTTAATAAACATACTAGTACTATACTGCAACATTCGCGCAGGCAGT
CAACTAAAAATAGTTCGCAATTACCAGCGGAGACGTGATCTCCTACCATTGATGGGTTTT
TTTAACTATCTGGTATTGCAATTGCAATTCTATGTTTGGATGTATAGTTAAGTGTGTCCT
CCTTTTTAATTACCAGCAGTTGGGCCATTTGTATATGCTTAAAAGGGAGGGAATCGAGTT
TAAGGGAACGAGAGAAAGGGGATTACCCGGTCCCATATCCCGGGGTCGGGCCTCTTGAGC
ACGACGATGTGATCGAGATGCGCGTCCGGGTCGGTGATGTTCCAACGGCACGCGGGCCGC
GTCTCGTTCGCGGGGCGCCACCGGTCGTAGCGCGTCACCGTTGTCTCCCCGCCGAGCGCG
GCCTCCGCGCCGCGCGCCGACGACAGGTAGTACACGGCGGGCTTGTGGCACGGCGTGCGC
GCCAGGGGCCGCGTGTTGAACGCGTACGCCGTGTAGTCGGCTCGCCGGTACCAGTTGAGG
AACGTCCGCGCCGGCATCTCCATCTCCCGCGGCGAGGTCACCCCCCTCGACACCAGCACG
GCGAACCCCCACGCCACCGACACCGTCCACCGGTTGGCCCCGTCGTAGCAGATGGACTGC
TGCATTATCCCCGCCGGGTCCAGCTTCACGGGCCCGTTGAACAGCCTCCGCACCGCCGCC
GGCCGCGCGGGCGCGTTGGGGAAGAGCGGCTGCACGACGTCCAGGTGGTGCAGCGTCACG
ATCGGCGCCACCGGGTGCGCCGCCAGGAGGCCCAGGAGGTCCCCGTAGACGTCGTACTGG
TGGAACCCCGGGTGCTTGGTGAGCGGCACCCCCAGCTCCGCCATGCACGCCTGGATCCGG
TCGTCGCTCCCGTAGAGCGCCGGGTATCGGCGGATGCAGCCGTCCTGAATCCGCGCGAGC
GCCTCCGCCAGCGGCCTGCTGATGGCGAACCCGCCGCCGCCGTACGCCATCCCGTAGGAG
AAGTAGATGTTCTGCAGGTGGCTCTCGGAGAGGGAGCCGATGTAGTAGGGCTGGCGGTGG
TCGAACTTGTTGAGGACGGTGAGCAGGTTGTCCGGGAAGAAGACGGTGTCGTCGTCGCCC
ATGACGAACCAGCGCACGCCGGGGAGGCCGAGGCGGAAGGTCTCGGAGACGATGCGGGAT
ATGCGGATGGCGGAGCGGTGGCCGCGGCGGTGCGTGTAGGGGAAGGCGGAGGTGTCGGAG
GAGATCTTGATGGCCGGGAGCCCCGTCCGCGCCGTGGACATGTTGGACTCCCGCACCTCG
CGGTCCAGCCAGACGTAGCCGCGCATGGCGCTGCGCGGGCGCCACCACACCTTGATGTAC
TCCTTGCGCTTGTCCCAGAACCGCGACGACGCCGCGATGCCGAACACCACGTGCTGCAGC
GTCGTGGCCGTGGACGCCGCGGCCTTGTTGTCGACCACGGCCGCGGCGGTGCGGTTGGTG
GAGACGCGGGAGGTGACCGCGGCGGAGTCCGGCGGGCAGGAGGCGGCGGAGGACGAGGAG
GCGGCGGAGGCGAGGAGGAGGTGGAGCGTGTAGAAGAAATAGAGGGCGGTGAGGGGGAGG
AGGAGCAGGAGGAGGAAGCGGAGGAAGGAGCCGGTGACGGTCTCCTTGCCGCCGCCGCCG
CCGCCGCCCCCCTTCATTCCTGGCGCCGCCGTGCCCGACCTCGCAATGCTGACCTCCTCT
TCCTTCCTCGGCGGTCCGGGTGGGATATGCTGACCGCGACAGGTATCGGGGAGGGGAGTG
GGGTTCTGGCGAGTGAGATTTGGGAGATTTACATGGGCGGGTCGCGTGGGCAGCAGCCAC
GGGAGTGTGCCAGGTCGCCCATCCCCTCCGCGTGTTGCTCTGCTTCTGGTTCCCTTCCTT
GTGTATCTATCTCTCCCTCGCCGCAATCTCTGTCTCACTCTCTTCTCCTTCTCTCTTGTT
CTAGCATCGGCTTGGCCTTGGACTGGGATTGAGTGGGGGTTTCGGGTGCGGTGGGGTGGG
TGGGGCGGCGCCTTTTCGAGGTTTCTCCCGTGCCGGTGCTGCACTGCCTGCCTGCCTGCA
TGTCCCGTCGCTAATCATGTTCACATTTATTTTAATCTTTTTAGTGGAAAGTTAAGATTT
ATTTATTCCCCTCCAAAAAGCCTACTATCAATTTTATTTATGGCAAGGTGCTGCCTGAGG
ATGGATGATTGGTTGCTGTGATGACGTCCAGATTACAGAAGCGCGGCGCGTTCGTCAATT
GATCTGCAGATTTCGGCCTGCCTGGTTGGGTAGATTTCGGGGAGGTGCATTGATGCACCA
GCTGTTGCTGTACCGGCTATATTTGTGTTAGAGCATCTACAAGGTACAAGGACTTGACAA
ATCCGATCTTGATATAACAACGTATTTGGATGAATTCTTATATTTCGCTTCAGCATCCAT
GTATTTTAATTCATGCAAATTCATGTAGCTTGTAGATAACAAATGTTTGGTAACGAAAAT
AAATATTTCTTTCGTTCCTAAATATTTATCTTTGAGAAAATCTAATTGGTAGCATGCGCA
CGGCTGCGTTGCCCTGCCGCGGGCGGATCGATCCGTTTAATCTAAACATATCGTGTGGGA
CCGTTAGATTAGGGAGGGAAAAGAGTTTTGCATTCTACAGATAACGTACGATTTCATTTC
TTTTCATGTTTAAAACTTTTAAAAAACTATCTACAAAACCGTTAATTCAATTGATGATCC
GTGTTCACCATTGGCTTTCTCGCGACGAGTTCTTCGAAACTAGATCCCATGTCGATATAT
TTCGTCAACTATTTTTTCATTCATACTTGTCATATTTTTTTACCCATTTGCCATATTATT
AACCACTTGCTTGCCTTAAAAAAATAACTTGATTGTCACTTTTTAATGTTGTTTCGTATA
AAAATCTTGTAAAATATTTCATTATACATGATATAAAAGCATGTCATTGATTGTGTTTGC
CAATTTAAAATATACCAACTTATCATAACGAGGTAGGATAAAAATGACAAGCACAAAAAA
TATACGTGGCAAGTAAGTGGTTAATAATATAGCAAGTGAGTGGAACAATGTGACAATTAC
GGAAGAAAAAATAAAGTTTGTCGAAACATGTTGACATGGGATCTAGTTTCGAAGATCATG
TCGCGACAAAAGCCAATGGTGAAAACAGATCATCGATTGAATTAACGGTTTTAAAGATAA
ACATTTTTGAATATCAAGCATTGGAGAGAATCTTTACGTCTATATTTAGGTGCATATGCA
TGCGAGGCGCCGCATCTCGTGAGTTGAATCCCTCTTTTTAAAGATTCAACTACGGACCAC
GTAAGAAGCAATATTACACTTTAAATTATGTCTATATACATCCGTATATAGTCCGTAATG
AAATCTCTAAAAGATAAATATTTAGGAACCGAGGGAGTAGTATTTACGTAAAATTTATTT
AAAGTGCACAACTCAATCATCGTTTTTTTATATTTCCATTATAGGTTCATATATAGTCCC
AAGATCATTGAGTAGTTGCGTATGCACATGATGATCTGAAAGATTCTGATACACTTGTAA
AAAAATCATAATCTGAGCTGCATCTTGATCTTTCGAGATTTAATCTGAGCATTCCTAGAA
ATCCTCTGGCGTCTCCAATAACCAACAACTTCTCCATGTCCAAGAAATCGAAGAACTCAT
CTTGACATTTGGTCAAGTTTTGTTAGCCCATAGTCCTCGTTCGACGAATCGTCAAAATTG
ATCGTTTTCATGGAAAAAAGTCACAAAAAACCAGGTCGGACAATGTGTCCAACACATAGA
GTGCAACGAGGAGCTCGGGAGTTGCCGAACATATCGCGGTGGCGTCCGTGCCGGCGACGA
CGTCCCGGGCTACGAGGATGGGAGACATGTGTGTTGTGCCGGTGTTGACGACGCACACGC
TTGGAATGGTCGTGGAGCACGCGACACGACGAAGATGCGAGACCGACGTCACGGAGGAGG
AAGAAGAGAGGAGAGAGTAAATATATGCGGTAGGTTGAGGGGGTTGATTTGGTGCAAATT
GCGGTGGGTCGGGCTGTCAGATCCAATATGAGGCACACACCCGTACGCCCCTATATCCGT
CCCATATTGGGGCTGGATATAAGAGATGCCAATCATTTCAGACGTTTGAGGCTTATTTAA
GACGCTCGTCTAGGTCGCATTTTCGTGATCGGTCAATGATCGGACCATCCATCTGAACAG
TTGAAACTGGTTTGAAGCGTGCGACTATAAATGCTCGTAGAGCATGTATAGCCGGACTTA
GCAAATATGACTTACTAAACGTCCACGAACGCAGTGACCGACCGTGCCCCTTATTTGTCC
GTTCGCGCATCCATATTCCTCATTTTCTTTCTCATATGTGTGATCACTTGCACATGATTG
ATGAAAAGAAAGAGAGAAAAATGAAAGAGTGAATAAAAAATGTGGTCTCGGATGGGGTGG
CTTCCTACGTGGCGGACTGACCGAACGCGTCCGGCCACATCCGCGAGCCCTTATATCTTT
CCTATATTTGTCCTTAATATGAGGGTTCACAAACAGAGTTGATGTATAGAGATGATACGA
CGGATCTCGTTGGATCATTTTTTTCCTCTTTTCTCGTGTTCGATCATTGATTGGTCATGT
CTACGGGCGTATGAAAGATTATTTAAGACGCACGACTATAGATACTCTTACGAAGCACAG
TAGGTGCTTTCAGGATGGGAGTGCTCTGATGTGGAGGGAAGACCTCTCTCTAGGTTATTT
TTTTCTTTTTTGAATTGAGACGTCGTTCGTATGTAATAAAAAGTGGCAGCGTCTTGCGCA
ATTTATATCCGAAAACACACACAAAAACCGAATTATAAAGTGAAATTCCTAAAGTATAGT
GTCGAAAAACCGTACTCCGAAGGCAATGAGGACTTTATAGCATTTCTGAAAAAAAAAATC
AAAATTTTCGGTGATGTGCATGTAATGGGAGAGCCGTTTGTGCCAATGATGAGGTGACTA
GGGTGACTTCGTAAATTTTCAAGATAATATGCCGGCTCAGTCTTTCAATGGTGCTCATAA
AAATAAAGTATGTAAATATGTTTATGTGATAAGTGTATACGCGTGTATATATTTGTGTTT
GTACCGTGTTAAAAAAACAGAACAAACGGACATGTCCAATGTGAGGAGTGCCTACCACCT
TTGCCATGGCTGATCATGAAATGCAGTTCGGTGGTGGTGCTTCTGGCTCAAGCCCGGGTG
GATCGAGGATAACATTGAGCTTAATTTGGCAAGCAAATGTCTTGCAAAAAGTAAAAAATC
AATGTCCGGAAAGCGTGAACTCAAGCGTTGGCAATGACAAAAAGTAAAGTTGTTCATCAC
CAGCAAACGCGCGCGACTTATCCCATTTGCGGCATGCAGGAATGCAGGATGAGTCTTCGT
TTCATGCCTTGTCCGTCTATGCGACAGCATGCGCCTATTCTGGCCGCTTTCCGACGGAGA
GAATGTCACAATTTAGAATATTTATTCTAAATAGTTGCATCTACATCCATGTATTATGTT
TCAAGTTTCATTTAAATTTAAAATAGGGATGATGAAATCCCAAGCACCAATTTAATCCTC
GGAGGGACCGAATTGCCGCCATAGTCTTTGTCTTTGACCTCAGATCCGTAGGTCGTTGTC
AACCAATTCGTCATCCATGGAGCTTTCCCGACCAGGCCCTTTGCGCCACTAGAACGGGGT
GAGCAGGAGAATCTCCCCCCTACCCCAGCACCCCTTGCGCATCCTAGCACCGATCCTCAG
CATAGCTATGAGGTCCTTACTGCTGCCCATGTCGCCGTCGTCGATGTAGGGCACAACCGT
CACTCCTGAGCATGGGATTGAACTCCTGGAACACCTAGAAACCCAATTGTGTGCCATGCT
TACTTCCCCGTGCACCGCAGCGCCGCAACCACGCTAACCCGAGCTCCGGTTGTCGCCCTC
GTCGTTGTTGTCGTCGTTTTAGACCTCCCTGTTGTCAGCCAATTGCACCACTGGACGCGG
CGCACACCTAGCCACCCGTAGCATCTCCCCGCGTGCCAAATGGTCGCAGGAGGAGCGATT
CCGGCGAACCTCCGCCATTTGTGGTGGTGGTCATCGGTCTGAGCCACTCATCGATTGATG
GGGTTATAGCCCTAGGGTAGGATCATAGGCCTGACCTAATAAGTCCTACCCAATGGCACC
TCATTATTAGCTTGAGGATCACAAGACACCTACCGACTGGATTAAGACAACCTCTGGTCC
ACTCGGTAGAGAACCACTCAAAGGATTATCTTATACTCGACGTCCGGATTCCACTCGGTG
AAGACCAGAGCCCAGTCGACATAGAAGTCCAGAAGCCACTCCAGCGAGGCTAACGGTCAG
ACGTTAGACTACTGTAGTTA