Contig Data
morexGenes
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Map Locations of contig_1566483 (3606 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1566483

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13772 2 1413 bp MLOC_13772.1 Available Available LOC_Os05g39060.1, FRAME:+2, EVALUE:4e-68, 13105.m04111 protein expressed protein
MLOC_13773 1 422 bp MLOC_13773.1 Available Available None





CDS Structure of MLOC_13772






CDS Structure of MLOC_13773






Contig Sequence (3606 bp)

>contig_1566483 3606 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGCATGGGCTGAGAGAGGTGTGCAACAACCCCTGGCGGGCTGAG
CACCCCTCCCAACTAGGCCCATGCGTCCGAAGGGGTAGATGGAGGCAAACCCTAGGGGGC
GGCCACCCTTGGCCGCCACCCCTCCTCTTGGGCGCAGCCCTAGGGCTGGCCGACCCCATC
CCTTCCTCCTATATATATATATGAGAGGAGAGAGAGGGCAGTCGCATCATAAGCCACAGT
GCAGCTGAATATTCCGTTGTACAGTTCCGCTATATGGAGTCTGTGCGTCCACAGTGCGTG
ACAACCCGCAAATCAAATGGATTTCTCTAGATATGCTCTAAGAGACCCGTTTCTGTGAAG
GTGCCAAGTTTAGTAAACGCGCTGCAAAATACGGGTCCGTGTGAGAGAAAAGAAAACGAT
TGCACTCAGAAAATATAGTGCCAGTAGACAGCAGCACAACATAGCGCGTGCGTGTGTATT
GATTAAGCATTATCTGCTGCAGACTTTGAGTTGGAACAGAGACAAACACAACGTTTGGCA
ACACGCAAGCTAAAAGACTCGCCATCGGCCTTCACATGATCATATGACATATCACAGACG
CGGCAGCAATCAATCACGGCGCTGGCCACGTTGCTGGCAATGGCATTGGCATGCCAACAA
CGACGCGAGGGCAACGCCCCCATCCACCAATCATCAATCAATCCACCATCCACCACGACG
TGCGCAAAAGGGGCTCTCGAAAAAGAAAAAGAAGAAGAAAGGAAGGAAGAAAACCGGCGC
GGTCGCCAAACCTGCCTGCCCTCCGCGGAGACCGTTGCCCCCAATCAAAGCAGCCCCCGT
CTCCTTCCCTCCCTCCCTCTCCCTCCCCGCTGACGCCGGAGGAAGCATGGCGAGGACCCT
CGACGGCTGCTGCTCCGCCAAAGACGTCGCCTACAGGTTCGCCGGCTCCCTTCCCGCGGG
CTGCGCCTCTCGCTCATCCCGCTGCTTCATTTTGGCCCACCAACCAACAGTTGAACCCTA
GGATCCAGAATCCATTCTAGCTTCATCTTGCTTGGAGGACCCGCGACTTATTGCTGTGCT
TGTCGCCAAAGTCTGTACTGTACTAACTTAGTGCTTACTGTCCACGAATATCAGTTTTAG
ACTACTGTTGCGGTGTTGCTGGGTTCACAAGGTACTCGATGGATGGATGGATGGATGGAT
GGATGGGCACTGAACCTTTTGCTTCCACTTAGTTCTGGCTGCTAGCTAGGGGCTCCAAGT
AGGGGAGAGCGTGCCGGTTCAGGGAGAAAATACTCAAGTGAATTGGATCATCATTGTCCC
TCTGTTTCTTGCGACAGACCATGGTCTCTGATGAATTGATGATGAATACTATAACTGGAG
AGGAGGAATTGGATGTCAAGTTTCGATTTCATACGAGCATTGCCTCCTCGTAGCTACATC
TTGGCACCTGATGTGACACGACTAAATACTCTAGGCATAATTTGAACTTGCCAAGGCTCA
TTTATGCGAATACGGCATTATTGTCGAAACTGTTCAATCGTCATTGGCCCTCTGTTTCTT
CCCACGATCATGATCTTTGATGAATACTAGAACTAGAGAGGAGAAATTGGATGTGAAGTT
TCGATTACACACCAACATCGCCTCCTCATAGCTACATCTTGCCACCTGATGTCACAGAAA
TAAATACTCTAAGGCATAATTTGAACTTGCGAACAATCATTTGTGCAAATACGGCGTTCC
TGTTGAAACGGTAGGATGATAGTTACATCAGGTTTGTAAAGCGTCTATGTGCGGTTTGAT
GATGTGTGTTGTTTCTCTCTTCTTACTGGCAGCTGTGGGTACTGTGGTTATGCACTGAAC
TTGAGCTCCTCGACACGGAACACAGCCAACATTGGATCCAAGTATGGAAAACAGATCAGG
AAAGGTGTCGTCTCGTTCTTCGCGATCGACGAGAGTCGGTTCACGCAGACTGACGAGGTG
AGCTGCATGCCATACTTCAGCTCAAGGTCTTCATGGGGTTTCTTCAGAAAGAGAAAACGA
TTGCTCTGCCGCAAGTGCAGCGGTCATATCGGTAACGCTTATGAGGACGAGGACTCTGCC
TTGAATCATAGCTCAGATGACACACACACAGCCTCCGATGTCAGCAGCATGTCTAGTCGA
AAGAAATATGTTATCAAGATTAAAGCGCTACAACCTTCATCCGACGGCTCTGGTGTTCCC
TTCGCTCTATGACAGCAACCTGAACCGTTGTATCGTGTGCCTTGAAAAGCATGGTTGCTC
TAAACTGTGCCGGACTGGGATGTTGTGAATCGGGTAAATGCAGCACCAAGAACTTCATAC
TGTCGGAACTTTTCAGGGGAACTCGTCATTTCTGTTCTGCTTCAGTCATCTTGCTGCCCT
TACTTGATAGTGATTTTTCATTTCTTTTTCATACCAGTATACATGTATATTTTTAGCTGG
AGGGTCAAATTTTAGTTGTGTTAATATTGCAAAATGAGAGGGTCTTCAGGGTGTGTCGCA
TTCTTGTATCAGGTGTTCAGTTTCATAAAGGCATTCCTGAAGTTGTTCATGTGGGATTGT
GACAAAGCTGTTGGCATCAAACAGAGAAGACTATAATCTGTATATTGAGTATAATCTGTC
AAAATATCAACTTATTCTCCAATGAGTAAACTTCTTTTACACTCAAATGAGTATAATTTG
CTGTGAATATAACTTGGTATGCTTGGTTCTGATGGAATGATGGTTTAAATATGTACTATG
TCTTCTCATGAGAGATTAGTATCCATTTATCTGACCTGCTTTCGATACCTGAATACAATT
CATAAGAGATCCAATACATCATTTCAGCTCTTGCTCAATTCAACTCAAGGATGAAGTTCC
TGTCACTACCAAGAGGGTATCGTGCATCTGTATTGGTGATTCCACAGATGGAAGCACAGT
TCAAAGAAGTAAAAGGTTATACTGTAGTAACTACAAATCAACAGAAATACAGCACAAATG
ATGATCCTGATCTTATACCACTAGCAATTGACACGAAACACATCATGAATTGGTCATTGT
GAGAGAGTTACACAATACTCCTAGAACACGGATTTAGCCAAGCATAGCAACCCAATCTAG
CAATTGATGTACGAAATGCAGACTAATCCATCAGATAAAATAGCAGAAATGGAGGAACGA
TGTTCCTGAATCGAGACACGCAATTGTTCAGTCAACGGCATTCTTTAACATTACAGATTA
GCCTGCAGACAGATATGGCAAATCAACTAATCGTCACATCAAGCGCACACGATCTTGCAT
CACAAAGAAACAACAATGGTACACAGCGGAGATGCAGCAGACCAACCAACAAGACAAAAT
CAGTAGCAAGCAATTTGCACAGAGACAGGTTCGATTTCCAACGACACATAACTTTGTTCC
ACGATTCAGTTCGAACTACACAGGAAACAGACAACTAAACAAGTCGCGGTCCTATCAAGC
GATTGGAGTCTGCAGGCGGCGAGGAAGACTGACGACGACGAGGGGCCTAGCCGCCGAAGC
CGTAGAGGGTGCGTCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCT
TGCGGC