morexGenes - Barley RNA-seq Database

Contig contig_1566463
Source Contig contig_1566463
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1566463 (6779 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1566463

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13764	1	350 bp	MLOC_13764.1	Available	Available	None
MLOC_13763	1	402 bp	AK250422.1	Available	Available	None
MLOC_13765	3	1867 bp	AK252642.1	Available	Available	None
CDS Structure of MLOC_13764

CDS Structure of MLOC_13763

CDS Structure of MLOC_13765

Contig Sequence (6779 bp)

>contig_1566463 6779 assembly3_WGSMorex_rbca.fasta
CGAACGTCGTTTCAGGAATTAAATCAGGAGCGGATCGGACGGCTATGGACGAGATCGAAC
GGCTGTGGAGGTGATGGATTTTTAGTAAATATCCACCAGTGGATTGGTAGCAGCCCCAAA
TATTATGCAATAAAGATTAAAAAAAACATTGTTTGGATCGAAATGCTGCTTCGTTTGTTG
CCTCTGCGCCTTTTCTCAAGTCTATGAGCCCACGTATCAAAATGCTGCCTCGTTTGTTTC
CAGGATGCACACAATCAAAAATAATAGAAAAAGGACCATGCCAATGACAATCAATCGTCC
ACAGTAGCAACACCCTAACCATCATCAAAGACATCATCCAAACTAGAAAGAAGGTTCTTC
AAAAACAACGCCTTCAGAAAAGAAACAATGCACAATCGTTATTGTTGCCCGATCAAATAT
CATAGGAAGAAATACCACGTTCCCAAAACAATGTTGAAGATCAGTACCATGCAAAACAAA
TAAAAGCCAGACCTTGGATTTTTACTCTGGAAATCACGCCTCTATACACAAAGGAGCATC
AACAACAAAGAAGTCCTACAATACTGTCGCCCCACTCGCCGAGGCTACTACTACAAGTCA
TGTACCACCAGACTCACAGAAACTTAATTATTGTTTTTTTAGAGAAAAGTATGTTTTTGG
TCCCTCAAGTTCCCAAAAAGTATAGACTTGGTCCCTCAAAAAAATTTGGTATACATTTGG
TCCCTCAAGTCTAAAAAACGGATAAGTTTGGTCCTAAACCAGATTTTGAGCCCGTTGATC
GGGTTTGACCATCACAAACCCCCCACGTAAACAGTACTCCGAAGAAAAATAAAAAAAAAA
TCTGAATTTTTTTGGGGTCCAATATGCTTACATGCGCAAGGTGCGACCAAAATTTCTGGC
TCTTTCAATACTCGAGGAGCGTCTGGCAAAAAAAATCTGTCTGATGAATAATAATCCAAC
AAAATCTTGAGGGACCAAGTCTAAACTTTTTGGAAACTTGAGGGACCAAAAACATACTTT
TTTTTTAATAGATCACAATGAACAGGGCGGCCCGAGAGCTCTTGGTTCCATGGATAACAA
CGCAACCAGAAAGTAACAAGCTCAAGGCCAGACCATAGTAGTCTGAAGGTTCCAGCAAAA
AAGAAAAGACCATACAGATCAATCTCCACATTGAAGTCAAAAACTCAAAACAGTTCTAAA
AGAACAACACTAAACTAGCTTAGCAGAAGGGAACCCCATAACACGCACACTTGATTACAA
GACCACAAGCCTTGATTTTTACATCACCACAAGCCTAAAGGGGATCTCGGCACCATCAGG
TGTGAGCAGAACTCTTCCAAACGACTCTTCAGTTTTCTGGGCACGGAATTGACCAGTTTT
CGATAGTTTTCAGGATCCTCTACCAAACCTGTTTGATGTCAATTAATTGAACGTTATCAA
AAATCATGTCGTTTCTATATTTCCAGATACACCAAAGCACAGCTGAGCAAACCAAATTAA
TTAAAAGACATTCTTATTGGCTATCAAATATCTGGTTATAGATTCAGAAGAACCACCAGT
AAGAACATCAATGAAACTAGCTATGACATGCCAGAGCTCTTCAGCAACCACACAATCAAA
GGAAAGGTGCTGGACAGATTCATGCTCTTTACAACACAAACAGTATTCAGACTTTTCTAG
TTTCCTGTTCTTTTTATTATCCATGGCCATGAGCTTGTTGCTTGCAAGCAGCCGTAACAA
AATATGAATCCTAGGGGGAACACATAATTGCCAAACAGCAGGGATATATACTAACTACTG
TATTTTTTCCTTCACACTAACACTGAATTCTCATACGGGAAACAAGGGAACTGAATTTTA
TGCCCCTTCACACTAACACTGCAAACTCCACACTGAAACAGACAGCAAACTCCAACAAGA
AGCAGAGAGGAACAACAAGCCCCGCCGCTGCACTGTGCCTCGTCCGCGCAAAGCTAACCT
CACCGCCAAAAAGAATTCTCATGCGTAGTTGAACAATATTGCAAACTTGGTAGTACCTTT
ATCTAATATACTCTGTCTGTAAAGAAATATAAGAGCATTTNNNTCACTAAAGTAGTGATC
TAAACGCTCCTATATTTCTTTAGGGAGGGGGTACAGTACAACTACATATACATTTCTGTT
GGACAGTATAAATCCTGAAGCTTTAAGCCTCTAAGGGACACACTTTCTCCTGGCACTGCT
GCTCAAAAGGAAGGTTCAGATGGAACTCTATCATCTGGGTGCCTCTATGCCAATTCCGGA
CATGTACGGCGCCGTCGAGGGTGCACCCGACGACGATGACGCGAGATCCCCAGGCATCGG
AGCAGTTGTAGGTGGCATGTGCACGACCATATGTTCCGTTACCGCACGGTCCAGCACAAG
CTCTTCCCTCCAGGTGCTCCGCAGAACCTTCAGCCTGTCGGCCACCTCGGTCATGGAAGG
CCTCTCTTCGCCCCTGGCGCCCAAGCACATCCTCCCCAGCTCGACCACTTCCCCCAGCAG
CGTCTCCGTCCCCGCACGCACGATGCTCGGGTCCAGGATGTCCTTGAGGCTGTCCTCTTT
CACTGCAAGCAGGAAGGACCAGACGAGGCTCTTGCCTTCCTTGGGCCCGTCGTTGTAGAT
GGCTGCCTTCCCCGTGATCAGCTCCAGCAGCACAACCCCGAAACTGTAGACATCGCTCTT
CTCCGTCAGTTGCCGCTCCTGCAGGTACTCAGGGTCCAGGTAACCCAGGGTGCCCTGCAC
CATCGTCATAAACTGGGCCACATCCTTGGGGAGTGTCCTTGATGCGCCAAAGTCGGTCAC
CTTCGCCATGTAGTTCTCGTCCAAGAGAATGTTCATAGACTTGACATCCCCATGCACTAT
AGGGTGGTTCATGGACAGATGCAGATACGCCAGTGCTTCGGCGGATTCTTGAGCAACCCT
GAGACGGGTGTCCAACGACGGGGGTGGACTCCCGTAGCTATGATGGATGAACTCAAACAG
AGTGCCGTTTGGAATAAATTCATAGACCAGTATGGGGACTTCCACCTCTAAGCAGCATCC
CAGAAGCCTGACCACATTGCGGTGGTTGGTCTGTGAAAGAATAATAATCTCCTGCACGAA
TTCATCAGTTTCGGCCATGTTCATTATCTTTGAGCGTTTCACGGCCACTACCCTGTTATC
CTTCAGAATGCCCTTGTAGACAGTGCCATGACCACCCCTGCCAAGTTCTCTGCTCTTGTC
AAAATCGTTTGTAGCCTTCTTCAGATCTTCTTCAGTGAATATCTTCAATGTGTCGACTTG
TTTTGACATAATTTGGCGATACAATATTTGACCACCATTCTGATCAAAGAATTTGTCCTT
CTCTTTGGCAAGCTTCCTTTTCTGATACTCAGCCCGTAGAGCAAAGATACAAACCATCAG
GAATATGGTACTGAAGGATATGCCTGGAAATCATGACAGCTAATTACCATCAGTTCAACC
AGATGCAGTGCAACATATAGCCCATTGCTTGGCCATATTCATGTATATAAACTGTTCTTG
AACTTGTATAATTGGTTCAAAATATTATGATTGCTAACAATCTAATTACCTAAGACCACC
TTCAGAGCTTTCTTCGGGTCAGCTGGAACACAGGGTATGCTCTTTGGATCATCACTCCTG
AATCCTGATGGGCAGAAACAGGTGTAGTTTCCAATGGTATTGCTGCATTTACCTTGGCAA
GGATACAAGGACTGGTTTGGAGGTTCACACTCGTTGATGTCTGTCATTTCAAGGAAGTGA
GGAGAATGTCAACATGGATAAACAGAATATTCCATTCCATAAATAAAGCTGATAGAACAG
AGAGAGTAGGTTTATTCTGCAAGACGCATATATGTACCTTGGCACCCTCCTTGTAGGTAG
GGATTGCCCTCATAACCTTGAGAGCAGTTGCACCGGTAACCAGGGCCGTTGGACACATCA
ACACATTTACTGTTCATGTCTTTGCAGGCATACCGTGATCCCATTTTGGTGGCTTCCGAA
CAACTTTCATTACCAACAACCCAATCAAGTACCAAATGGACCCCATCTGTATATTTACTT
GCGAAATTTGTAGATCTGACATATGAACGATCGAACTTGAACCAGTCCTCCTCAGCGACA
AATGAGTAGCTGCACGGGCTGAAAGGCTGGCTTTTAGAGTTTGTAAATGTTAATGATGAA
GATATGGTGCTGAAGGAGCTGATGTTTCCTGGCAAGGGAGTTTGGCAGCAACCCATGCCA
ACACACTTTGTGCTATCATCCACGCTATTTGCGTCAGTGCAGACTGAATAGCATGTGTTA
ACAATGGGGAACTCAAGCTGGTTCTTGCCCTTGGTGAGTCCTAAGATCAATCCAAGTGTA
GCACAACCAATCGATATCAACTTGTTCTTGGTGTTGGAAACCTTATAAAAAGCATCAAGG
CTTAAGCCATCCGAACCGTTGCCACTGGTGCCGTTGGTGTAGTTGCATTCCCATGATATG
TGTGGGTTCAGAACACGAATCTCACCTATGGTAAGATTGATATCCAGTACCCTAACTTCC
GATTCGGTTGAGGCCAGATACGCCCCGGTCTGATTGCATGTGACATTAAAGGGTTCTTGA
AAGCAGCCTTTTCCGGTGCCAAACGGGTACGGGATGCTGATGTTGCCACACTTATCTGGG
CAGCCAGGCTGTGCCATGCTGATGCCCCCAGAGGACCCTGCCCCATTAGCCGTAGTACTA
TGATGTAGGACTAGGGTGGCAGCAACAAGTAGTAAGAGCTTCTGACCTGTAGGCAATGAC
CAAGAGATGTCATAATGTCATATACATACCGATCTATGTGGGCTGGATGCATGTTATAAT
TAGTGATATGTCCCCCAGAAAACAAAAGATCCATAATACATCATACAAGTAGATAACAAA
TATTTAATTTCTTTCAAAATATGTCAAAGCCATTCCCCCACTCCAAACATCATTTAAGGA
AAATCCCTTACAACTCCAATCATAGAGGACAGCTGAGTAGTCAATTAAGTTTGATCCCAC
AACTACAAATATTTTGACCCGGCAATATCTGAACTAGATGAAGAAAATAGAATTCATATT
TTGTCATCACGAAAGAATTCATATTCAAATTTGGTATAGATAAAAAGAAACACGAATAAC
AATTCAGATTCCATGTTTCTTTATGTTCTCATTCTAGAAACTGTAGGGAAAGTACTACCT
CTGATTTGTATTTATTTGTCATTTGGGCTTTGTATTCATCTATCATTTGGGTTTTCAGAT
TAGACTTTTCAGACAGAGTACCTCCAATAACTATTTATGGACAGCCATTTTAAAATCGCA
AGTACATACTTGATATGGAAAAAAACATTAGAAAAATAATAATATAATCCTGTTTTGTTG
CTCTATTTTTATAAAGCTAAAATGGCACAATTGGTGGGTGGAGATAGAGTCACCACATTC
TTGCCCAGTACAATACATCGTTTTAAGCGATTTATATTGGATGTTTTTCCTGTTCTCCCC
CTTTTCATGTTTCCGTTCTATTTTACATCTTGAATCACACTTCTTTTTTTGAGAAATAAC
TTTCCATATATAACAGAATAACACGCTAAGCCCTATTTCCCGCCGTCGTAAACAGCCTAT
TTCTCCACATCACTGCTCCGTGATCGATTCCTTACATGATATTACTCTGAAGCCCCCATC
TCAGCTCAACCATTAAGCGCATAAAACAGGTTTCTCCCCCAGTTTCGCGCAAGTGTATCT
GAGGTACTCCATCAGTCCCGTAATATAAGAGCGTTTTTACCTTATTTTACGGACCGAGGG
AGTAGTAACTAAAACATCACTCACACAGCAAGTTGATTTTATTCTTGTTCAAGCAATGCA
AAATGTACAGGTTATCTGTCTTTGTGCGCTTGTATTGTGCTCCAATTTTCTTGTAAAACA
AATAGAGCTTCAGATTGGAGGAGCTACAGTTCTTCTTCAACCTCGGAGTCTGAAGCAGGT
CAACGGCACAAGACGAATTCTCCGGCCAAAAACAAAAAATAAATCGCCTAGGGTTCGCCG
TACCTTACAGGGAGCGTCTGGTGACCCTGAGCGTAGAACAGCGCGTCGGCCGAATACGGC
CGCGGAGGAGCAGCGGGGCGGAGGAGCAGTGACGCCGGAGGAGGCGGGGCCCGAGGGTAT
GCAGCGTCGAATACTCGGATCCGCCGTGGCGGCGCTGGCTGCCGGAATTCTCCAGAGGCG
GAGCAGAGCCCTGAGGTGTTGTGGGGCGGAGGTGGAGCCGGCCTCCCCGTCGGCGGCGCC
AGGCATCTCGCCGGCGAGGCGGCAAAGAAGGGTTGGGTTGGGGGTTGTCACTTCGGTCAG
GTCGGGTGGAGGTGCCGGGTGTTTAGTAGCCTTCGGGGTATATTGGTCATTTCCAAAGCT
ACATTTTGGAAAAGGAAAACGTTTAGAATCAACCGGCTGATGAGCCGGGTCTTATGCACG
CCACGCGTCGTGGTCCACGCACCACGCGAGACATCCACATGCTGCCTCTCATTTTTTTTT
TACTCTCAACCTTATCTCTTCCCCTCCTAGAGCCAGATTCATTTCTATTTCGTCTTGTAC
CTTCATCCCCATGCTTCGCCTCTCCTCATCACCCCCGCCCTCGTCGGACCAGCTCGCAGG
GCGGCTTTTGCAGCACCCGGTGCCAAGCTCACACTCCGGTGACGGGCTTTTGCAACGACG
ACCGCGACGAGGGCCGACGTGGGCGCTGCAACTCCGGTGATGTTGCCTTCAAGCTATTG