Map Locations of contig_1566281 (9313 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1566281

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13701 1 705 bp AK357594 Available Available None





CDS Structure of MLOC_13701






Contig Sequence (9313 bp)

>contig_1566281 9313 assembly3_WGSMorex_rbca.fasta
GAGAGCCCCCCTCCTTCTTCTTATTCCTTGGCCTCCTCCCTAGGTGGGAGGAGGGGTTAT
ACTGTGGTCCATAGCCGTCATGGATCCCGGAGGGCATCAACCCCTCAGAGATTGGATCTA
TCTCTGTGTTTCTCTCCTGTTTTCGCTCCGTTTTCTGGTCCTTCACCGTTTCTTAAATAT
ACGAAGATTCGAAACTCCGATCGGGCTGAAATTCCGAGGGGATTTTTATTGCAAAAATAG
GTTTCTTGCGACCAAATTAGAGCTCCAACCGAGTTAAGGGGTGGCCAGAAGGCATCAGGG
CGCGACCACCCCCCTGGTCGCGCCCTGTTGCCTTGTGGATGCCTCGTGCATCGTGTGGCA
TTGATTCTTCTTCCCAAAATTCACATGTATTTCAAAAAAAAATCTCCATAAATTTTTATC
GCGCTTGGACTCTATTTTATATGCAATTTATGTGAATCAAAAAACACACGAAAAATAGGA
ACTGGCAGTGAGCACTGGATAAGTAAGTTAGTCCCAAAAATAATACAAAGTGTTGCCAAA
AGTGTATGAAAGTTGTAGAACATTGACATGAAACAATTAAAAATTATAGATATGACGGAG
AGGTATTGGTTCCTTACCCAACGATGTTGTTAAGCATCTAATTATAAGATTTTTCCTAGT
AGTGAATGGAGAGGATGGAAAATTGTGATATACTAATTATGCAAAAGGGAGTCAGAGATG
GCAACACATATTATATTTTGACGTCCCTACAAGACACACATTTAAAAGGATATCAAGATA
AGGATGGCATTGACCAATATGGGCATCGCTGAGTGGAGCAATTTCGACACCATCGAGGAT
TGGCACCACATTATTGGTTTCAATGGTAATTCAAGGAGGATCTTCAATTACTCATCATGT
TTGTTTCATGGGAAATCCAGAACTAGCAGAATGCGGGAGTGTTTAGGAATGTTTTTTCCT
ACCAAATGTAATCACGTCTAGAATTAAGACCAAGTCGAGCATTGGGGGTTGGCACGGGCC
AAGTGACTAAGTTCTCTAATGTTGCAAGAGTAGGCTAGTCATTTTGGGGCCACCTTTTGG
AGGTATTTTATTAACATAAACTCATCTTAATTAATGAGATGTGACAAATCTTTCGCTTTC
GTCCAATTTTTTTTGCAACATTTATCATATCAAGAAGTGGGCGATGAGAGAGGAAGTGAG
GGAGGGGTGTGGGTGGGTCAAGGAAATCATGGAGGAGACACATAGGTCTCTATGCCTTAA
ATTATGGACGACGCTATGGGTCATCCCGCTAATGATTGAGAGTTACCAGCCGGGTCCTTG
AATGTTGGATCACGTGATCTAGGACAGTTGGATCAACCATTTGAAGCATGTCCCTAATTG
CAACACCACCATTGTTGCAAAGCATCACAACACCACCATTGTGGAGCACTACCATACTGA
TGACAGTGTTGTCCGTTGTCATCGTTGCAGCAGTAGCAACGAAAGTGTGATAGTTACCCT
CGGCCTTGCAGCGGCATCGACGATTGTAACATGGCAGATGTTGCAGCGAGGTGTATGCAA
TAGCGGTGGCTGCAGTGCCCCCAACTTACATCATGTTATGGTTGCGGTCGATGTTGCCCT
ATGAGTTGCAGCTTCATCATTGTGCAGAAGCTCGTCAACATTGTAGAAGCACAACACGGT
TGCATTGTCATCTACATTGCAGAGCTCGTCATATCCGTGCCTTTATTCCTTTTGCCTTTG
TCGCACAAGTTGCACTTCCATGGTTGCAATAATGGGAAATAGTTTGAAGCATCGAGCTTC
CATTGCCTTTCAGCGACAAACCGTGGATCTTGCCCCGCATGTCAGCGGAGCCATATCTCA
TAGCAGAGGGTGTGCCGCCATCCATGGATCCCCTCTTTGCCGTGTCGAGTGAGTCACTGG
AAAAGTTAGCAAAAAAATGTGTGCGTACGACAATCTATTGGGCCAAATGACCCCTTTTAC
GTTCGGCTAGTGCACACAACACATAAATAGCAACAACAACCACGCAACACACGACTGTTT
TACCTAGGTTTATGCCGCTATGAAGCGTAAAACCCTACTCCTGCTTTGATGGATACATGA
GTGTATGAGCGATGTGTTATAGAGAGTGCAACCTTTACACCAAGGAGCTCGGAGGTGCTA
CTAATGTACTGCAAACTGGCAAGGTTTCAAACCTTTGTAAAGGTTGCCATGATCCTCCTT
TTATAGATGAAATGGGTCACCATAATGGTAAAATGGTAATTACAAGGTCAATAGTGGCTA
TAATGCCTAACAATGAAGGCAAAGGACAAACACATTAAATGTGTTGTTAGGTGTCACACT
GTAATGTATGTCCGCAAGGGAACTCTGTTCCACCTGTTCCGCCAGCCCAACTATCTTTTA
TTACTACGACACGTCATTAGACGCGTGTCAATAAAGTTGATCTTCACGTGGTGGTCCGCC
ACGTATCGTGATAAGCTCTACCTAAACGCCCACACACCTGTCACATACCGACAAGGTCCT
AACTGGTAGGTGTGGTGGAGCAGCGGAGGAGGTCCGAGCTTGTCGGTCTGGGGGCTTGCC
GGCCTTGAGCTTGCTAGCAACATGGGGATACCCACGTCTTGATCTTCAGAACTTCCTTAG
TACTTCTCGACGACGTGCGTGGAGATCTTCTTCACGATATTTGACTACCATGTCTTGAGT
TTCTTTGGAGTGGATTCATCCTCAGCCAAACCTTTCCTGACAGAAAGGCTACAATTGTAC
CGAGGCAAAACACCTGCGCTACTATTCAAACTTGACATTGCCAAGGCCTTCGATAGTGTG
TCTTCGGAATAGATCATGGAGCTATTTCAAAAGTTGGGTTTTCCTCCATGATGGAGGAAC
TGGATTGCGCTGCTTCTATCAACGTCTTCGTCGTCCTACCTCATCAATGGTGCACCAAGC
CAACAAATCGAACACCAACGAGGGATTCGACATGGGGATCTTCTCTCCCCACTGCTCTTC
ATTCTGTGCATCGACCCACTTCATAGCATGTTGGAGGCGTCCACTAGGACTGGCCGGCTG
TCGGCCATGCCCAACGCCTCGGCTAGGATGCGCACAAGCCTATACACCGATGATGCGGTA
ATTCTTCATAAACCCTGTGCGCGAGGAAATGGACATGCTGTTAGATCTTCTCGAGCACTT
GGGTGATGCCACGGGCCTGCGCATCAACCTCGCTAAATCATCGGCAATCCCCATCAGATG
CAACGACATCGACCTGGATAGTATCCTGCAAAGCTTCAGAGGTAGGACGGCGGCGCTCCC
AACCACATACTTAGGATTACCTATCATGACAGGGAGACTTCGATTAGTTCACCTACAATT
CATCCTCGACAGAATTAGAGCTATGCTTGTGGGTTGGAAGCGCAGGCTCATGCAAATGGC
AGGTCACCGCGTCCTTGTGCGATGCGTCCTTTCAGTCCTACCAACCTTCGCGATCATGGC
GCTACGTGCACCCAAGAAGTTCATCCAGGACATCGACAAATCGCGGTGATGCTTCCTCTG
GGTGCAGGACAAAGAGATCACTCGGGGAAAGTGCAAGGTTTGATGGAAGACGATCGCCTC
GCCGAAGGCTTACGGTGGTCTTAGCATCCAAGACCTCCCAAAGTTTGTGCGCGCTACGGC
TATGACGGTTGTGGCTCAGCTGGTTGCAGCCGCATAGACCTTGGGTCGACACTGGCATGT
CGTGTGACAGTGATGATCGGGCTCTGTCCGCGGCCTCCACTAGCGTGTCCATCGACGATG
GGGCAACGGCCTCCTTCTGGTTCTGCTTGTGGCTTGGAGGCAGACAACTCTGTCTGGCAT
ATCCAACGGTCTTCGCCATGTCCATCAGGAAAAACAGAATATTAAGAGAAGCTCTGCAGA
ATGATCATTGGATACTAGACCTACGACATGGAAACTACAAAAGCATCGTGCACCAAGTCA
TTCAGCTGGCAAGGGAGATCAGACAAAGCGAGCATCACGATGGAGCAAGGATCACCGAAG
TCCATCAAATGAATGGTGTGCGGCTCTCGGAAATACTCCAGGCAAACGGCTTACTTGGCC
CAGTTTAAAAACTGTCAACCAAGCAACTTTAGAGAGCTCATCTGGAAGGTTTGGGCGTCG
GGAAAGATCAAGATGTTTCTTTGGCTGCTCCACCAAGATAGGCTTTGGTACAATGACCGG
CCGCAAAGAGGTGTTGGGAAAATGGATACTTCTGTCTACTCTATCTCAGAAACCTGGAGA
CCTCCGTTCACCTGCTATGGGAGTGCCCAGTCGCGTTGCAGGTATGGAACACAGCGGCAA
CTTGGACTGCCTGTTGCGCTCTCAGCCTAGAAGTGTGGAATGAGGGAGGCTCGACGATCG
ACCGCGTCAAGATAATTGCAGTCGCCGCTGTCACAAATGTCAGGAAGGGCGCAAAGACAA
TGATCATACTCATTGGCTGACATATTTGATTGACGCGAAATGCATGGGTGTTCAGAGGAA
AGAAGGCAAATGGACGCCACATAATAGAGGCATGCCGTAGGGACATGAGCAATGGAGGAA
GGAGGATGGCCGGTGCAAAATGCATAGAGCAGCCCTTTGGGGTGATGGTGACATGAGGAA
TTAGCTCATGAAAAGGATCCTAGGTGCCGGAAACAAAGCTTTCTTGGCAATGTTTGTAAT
TTTTCTTTCACCCATCGATTACCTGATCAACATTTTGCCATCCCTTGTGCTAAATCAATG
GAACGTCAGCCATGCTGGATTTTCAAAAAGAAAAAACAATTGTACGTGGGTAGTCAAGGG
TATGAACATCCAAAGTCCATTACACCGACAGAAAGTGATGACCGGCGAGAGACTGGAGAA
GCGCGTGGACAGTCCGACGGAGAGAGGGATAGTTGGGCCCAACAGGGAACATGTCATGCG
TGAGGCGCGGAGCGTACGCTAGGCAGAAAATCAGCCTGTTGAGTTTTAGTGTCGCCCTTA
TAAATTATTGAAGTAGGAGGAGTAGTAAACACAATGGGTGTACATAGTATTCAAGTATTT
CAGCTACTTGCACATGGCACCGATCTCCAGGCTAATGGACAAAGATCGACCTGTAGCTCG
TCGGGTCGAGCTGGCACTCCACTCCTCCCTCTCCTCTAGATTTCGCTAGTTCACCCTTGT
CTCTGTCGGTGTGGGTAGGGTAGGAGCTCGGTTGAAGTTGAACCGACCAGGACCAGGCCT
TGGACTTGGCACCCGCAAGTCCTTGCGGCTTGCCTGCATCTCCATCTAGCGACTCATATC
TGGCAACTGGCCTCCACAAAGGTGACGAGGGCAATAAAGGCGCACGTGGTACGTGGACGC
GTAGTACACCCCTCGCATGACCGCATCTTCTGCATCTTGCGGGTTTCTTCTTGATCGCGA
TCTTGCATCGACTCGTCTGCATAGCTGGTGTTTATCTCATGGAGGTTCAAGGAACGTGAG
GAGCCCATGTGGCTCCGAATAACTTTACCACTGTAAAGACGTGCTGCAGCACTCCTTTTG
GTTTAGGCGGTGTTCCTTCTCGACCACGAGGCCTGTGGAGCTGTCATGGCAAAAGCCTAC
AGCTTGCGGAAGGGAAGGGTGGTGGGTTCAGATGTGGCCAGATCACCAAGGAAAAAAAAA
AGGTGTTCAGCATGACACGTGGGACCACACATATATTTATATTTATTCATGCTGACTAGG
ATGCCACCTCAGCAGAGGCTCTACGGGCACACGAAATGAAGGTACAACAGTTGAGAGGGG
GAGAGAGACTCAGTGTTGAGGGCTGAAAATCAAACGAATAGTTCAGCGGGGAATGTCTCC
GGAGTAACAAGATGCAACCAGCAACAGCAGTATATACCACTCATGTAATAATACAGCTTC
ATAATCCTATACTTATTAGGAAAAGAAGCTTAGCATAACTGGGAAGGTGCCGCAAGCTCA
CTAGTCAAAATAAGTCTGATAAACAGAAACATATATCTCTGCCAAAACAAGTATTGGCAT
TTCTCCAGCGAGTTAGAATCGTCCGCGCACAAAACTAAATATCCTTTTACAGTACCAGAC
CTTGCAAACTTAATCTTTCACAAAATCCCTGGCATCTTCTTCATCAGACTCATCCTTCTG
TACAGCCTGTTCAGCATATTCGTCAAGAGATGCAACAGGGAAAAGGTCGCCTTCCCGATC
TCGGTCCGCGATCTTTGGAACTGATGGCCCGCTCTCCTCATCCTTATTTTTGTTCATCTG
CAAGGAAAAAATTAACCTAATGAATATGCCCAGAAGAAGAAGAAAAATACTGTGAAGATT
TAACTCAGGCACTCAAATAAAAACTAGCACACTGAACCGGAGTATCAGTTTGTGGAACTG
ATATTACGAATTATACTGAGTACCTTCTTCCATTTGCAAGTCTCAAAGAAGAATATCAGA
TGTCATGTATGGTGGTTGGGGGAGTGTGGGATCAATAACAGTTCACAGTAGAGATGAAAT
AATGCTGTTCTATTTATTTTCAAGGGCAGACAGAAGACCCATGATAGGAGAATCCACTAT
TACCCATTCAGGCTTTTTTTTTGTTCCATTTTGAACAGCAGATAGACGTATTACTAATGC
TAGAATGCACAAAAGTCACTATTTTTTTTTTCTTCTGAAAGTTCGCAGTGCAGGTCCTCC
TAGTACTTCAGCGAATGGAACCTAACCCAAATGGACTCCATGAATAAAAGGGTGGATTTG
GAACAATGTTCGTCAACAATCAAAAATCAATATGGTCACGTATGTTGTCATGTTACACAG
AACGGATGTCAGCAGAACTGTGCAAAACCTGGACGATTGAAGATTCAATTTAATAGCACA
ATATATGCATTGATGGAAGATTTCCTGAGGTTTAAACCTGTGAATTACCTACAGTAGGAA
CATAGCCGTGATTGTCGGCTATTATCATGTTCAGGAAAGCTTATGCCTCCAGGCGACATG
AAGACTGAAGTTTTTTTTTCTTGCTGCAGGAAAGCTTATGCCTCCAGGACTATCTTCTAA
CAGATAATTTACCAGTCATTGTTTTTAAGAGACTCCTGGAACTTTGAACTTCATCCAGAT
CTTTATATTTCCATGTTCGGTAATAATAAGTTGCATATAGATAATTCCTGAAATGTGTTT
ATAAACCTTAAGGGCCTAACTGGGATGCAAATTCTAAAAAATAGGCATAAGAACATTGTG
GGATTGGGATGTCATCGCTTGTTGATCTAACAGAAACAGTAACACATGAATGTGTAAGAA
TGACCCTCAAGAATGCTACTCCCTCTGTAAAGAAATATAAGAGTGTTTAGATCACTACTT
TGGTGATCTAAATGTTCTTATATTTCTTTATGGAGGGAGCATATGTGATTTTGCAGGAGT
TACAAACAGTTTTTCCATGAGGCCAAGCTCTCATCAGAAGTTCCTACAATGTAAAAGAGC
CTAACTATATGCATTTACAGGGCAACTGCAGCTATTTGTTAATGAAGTTTCAAGTTTTTA
AAAACCAACAGATTAAACCTAAAAAAGATTTATGTGAAGAGTTGACACTGAATGGTCCAA
AAAAAACTGGAATATCACATGCTTCATTTCATGTTCTCATGCTATACCTTGGAAACCAAC
AAAATCATGTACATAACGTAACATTCAGAACAAGAAGACATGGTGTGCATTTTCATTTAG
TTGAGATAGCACTACCATGACAAAACACCTATTCCTAATCTAAGAATGCCAATAATGTCA
CTTGACCAATATCACAATGCATCTCAAATAAAAAAAGATATAAAAAGGCAGATCAAGGGC
ATATGAGGAATACTTGAGGTTTTGCTCATGTGATGAGTGAATTTAGTATAACTATGAACA
AACCTGTTTGTTTTGATTTCTTTGCGATAGGGTTTGTGCTAAATTTATGTGAACAGAGTT
TCATCATGCACACAATTTATATAACTGAAGCCCCTCTGGAAATTCAACTTCCCTATTTGA
CCATCTGAGTGATGATACAGTGGCATGTAACATGCTATAATATAGGAGGTGCAAATTTAA
GTGCAATATATTTAAGTTATTTTAACAGGCACAATGAATGAATGGAATTCATCTTTTAGG
AAGAAAGAACTAGTTATGTACTTATGTTAAACACGACTATTCAAGCTAAAGATCCGAGGA
GTCGTACTCGGATTAACATAGATTGAAAAGGAAAATTTAGAATGTGCTAGGCTCAAAATT
GAGAGGTGGGGCCTTCTATTGATTTCAAGAGGTGGATTAAGGAAAGTCTGTTTTATACTC
CTCAAGTTTTCCTCTTGTCTAAATCTCAAGAAGAGTAGAGGGGGTCAAAATGGACTTGTT
CCTTTATTCAGATTCAAACTTATGGGCTTATTAGGTCAGCTTAGAACCAGCATCAAGGAG
AGCATAGAAAGAAGCGCAAGTGCATTGAAAATAAACTTATCCAGCAAGAAAAATTAAATA
GCAAGTGCTCACAAGGCGAATCAGTGTCCTTCGCTCCCTCTCCCTAGCATATCTGATGGC
CTATAAAATAATTCACTGGTCAGCACAAAACAAATGGATTTCTCAAGGTTCACAACAATC
CTCCTCCATTATAGAAGAATCAAACCTCCTCTAGTGCTTTGCGCTCACTGTCTTCTTCCT
CAGCATCCCTACAGGATGACACAGAATCATTACAATACGTAAAATACAATAAAACACAGT
TCAAATTCCAGTTACGGTGTAGCCAGTACTAGTGTAGCAACAAAATGAAATAGCGGGGAA
TCACCTTCCAACAAGCTGCTTAACAGAGGTGCAGCACTTGGCACAAATCCCAAGCTCCTT
GGAGCAACCTGCATTAAACAGAGACCACACATAGACATATATCAGCAACAATCAAATGGT
ACACCAGCACCACCGAAACAGGACATATCACTGAGCAGCCGGAATTAACCTGTACAGACG
TTGTGGTACGCCTGCCGGACGTTTCGTTTACTGCACTTCTGGCTGCAAAAATAAAAAGAA
AACCATAAGCATCCATCACAATCCCCCTCTAACAACGGTTCCCAAATACTATGCCGCAAC
CAAGCGGGCAAGAAAGCTACCATTTTGTAGGCTCGACAATCGGCTTGTACTTGCCGTATC
TGCAAAAGATGAGACGAACAGATCGGACCGAGGAACACAAGTAAACCAACGACCTAATGA
ATGTATATAACAAAGGGGGGAGAGCCCCGTACTTGCGCTTCCAGTCGATTTGGTCCCGGC
AGCGCTGGCAGACGCCGGTGATCTCCGACAGAGGCCGGAACCTGCCCCCGGGCTCCTGCG
CGAGCAGCGGCGA