morexGenes - Barley RNA-seq Database

Contig contig_156628

Source Contig contig_156628

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_156628 (1814 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_156628

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13699	1	803 bp	MLOC_13699.1	Available	Available	None
MLOC_13700	1	357 bp	MLOC_13700.1	Available	Available	None
MLOC_13698	1	280 bp	AK366387	Not available	Available	None

CDS Structure of MLOC_13699

CDS Structure of MLOC_13700

CDS Structure of MLOC_13698

Contig Sequence (1814 bp)

>contig_156628 1814 assembly3_WGSMorex_rbca.fasta
ATACTAAGTTATGCGACTGCCCTCCCCCATTAATAATTTCCTATTTTCGTAAACCATGGG
GTGTTGGCGTTGGCGAGGCTGCCCCTGTCACCGGCGGGCGTGCGTGCAGGTGCTGTCGGT
GGCGAAGCCGCTGTCGATCCAGGCGCACCCGGACAAGTCGCTGGCGGAGCTGCTGCACGC
CATGCGGCCGGCCACGTACCGGGACGCCAACCACAAGCCGGAGATGGCCATCGCCGTCAC
CGACTTCCGCGCGCTCTTCGGCTTCGCCGGCATCGAGGTGCGTCTCCCCTCCCAACCGCC
ATCCTTGTCTCGTCCCCCGCCGCCACGCCGTATACAAGTCCACTTCTGTTGCGTCTCCGC
AGACATATATTTTGTCATATACTCCCACTCCGTCCGTCCGGAATTACTTGTTATAAAAAA
TAAATAAAAGTGAATATACCTAGAACTAAAATACATCTAGATACATCAATTACTCCACGG
TTATGTTACGGACAGAGAGAGTACAAGCCAAACGTGTGCGGTTGGACTGTCAGAGTACTT
TAGGCTCGACTGAATCTCGCTACGAACAAGCACGCCTTGACTTCTTCAAGCAATAAAGTA
TGCCAAAATTGGTACTACTACTACACTCGATAGCTTCTTCTAATACAACGTGGCACATGT
TTAGATGCGTGTTCGAGAAGGAAATGCCATGCCAATTCCTCACAAGTGTGCACCTTGGTT
GGAAAATGCCATGGCAATTGTTTATTTTTCGTGAAAAATCCGCCGAAAACTGCCACCTGT
TGGATCTAGATCGTGTGCCTCTCGCTGGGATCTCATCCCCAGTGAACGTTCGCCAGTTTG
TTTCTTTCCTACTAGTTGATATACTTCCTCCGTCCCAAAATAAGTACAAAGTCGTACTAA
GTTTAAAACATATATACTCACCAGCCACCAGGCTGTCCATTAAAATAATATCACACATTT
ATTTGAAAAACAAATGCATATCAGGCACGAAATAATGGTATCCCACAACCAATTTTTGAC
ATGTATATCTAAGATCTATCTAAACACATAAATGCGACACGCCAGCCGGCTGCATCCACC
TATCTCTCATCCAATAACTTGTCGGCACGTGTCGGTGGTGCTTGGAGATAGACACACTAG
TGCCAGAACAGGACACAGATTTGGGGTTAATGATCCAGCAAAATAAATTAAATTTGGACG
CCGGTATCCGACTTTTCAAATATACAACCTTTTGTTCTTCACAGAAGGTGCTTCTCACCC
CTATGTGAGTCTGGATCAAACTCAGGATCTGGTACTTGCTCGTTCCTATCAAGTTGGTTT
CTGCGGTAATACTTCGTCTGTCCAGAAGTACTTGTCGGAGAAATGGATATATCTAGACGT
ATTTTAGTTCTAGATACATCCGTTTTTATCCATTTCTTCGACAAGCTTTTCTCGACGGAG
GGAGTATGTTGTAGTAGTAAAGTTGAATTCTGTACAGGGCATATGTAACCGATTGGTTAT
TGGTAGGCGGTAAGTACAAATGTAGTTTATGGTGGGACAACTGAAATGAGATTGGAAATA
GCAAGTACAGTTATTAAGGGAAAGCCTTCGCAAAACATGTTGCGTTGGATGAAGAACATC
CACCTGAAATAATACTTGGGGTGGTACATATTTAGTGCCTGTTCGGCAGGCCTCCGCTCC
TGGAGCGGGTTGGAGGAGCTGCAGAGTGGCGCCGAACGCGTCGGCTCCGTGCTCTCCCGG
AGGCCATTTTTCCAGAGTTGTAAAAATGACGTTCCTGAAATTTGAAAAGTGAGGCACCCC
CCCCCCCCCCCCCC