morexGenes - Barley RNA-seq Database

Contig contig_1566221
Source Contig contig_1566221
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1566221 (7538 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_1566221

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13678	1	373 bp	MLOC_13678.1	Available	Available	None
MLOC_13677	2	1573 bp	MLOC_13677.1	Available	Available	LOC_Os06g39600.1, FRAME:+3, EVALUE:0.0, 13106.m04105 protein protein phosphatase 2C, putative, expressed
CDS Structure of MLOC_13678

CDS Structure of MLOC_13677

Contig Sequence (7538 bp)

>contig_1566221 7538 assembly3_WGSMorex_rbca.fasta
CACACGTATGCTCGACCACCCAACCCCCACCACTCGCCACCTCTTCCGAGGGCCCCGGGT
GCCCCCGCGGGGCGTTTGGGGGGGCTTAGCCCCGGCGGCGGCGGCGGCGGCGGCGGCAGG
GGTAAGCCGCCGATCCCGTCGTCAGCCTCGGCGAGGAAGCCGGTGCTGTCACGGCACGCA
TCCTTTGTAAGTAACAACGCCTCAGCATCTCGAATCTCGGCGCGCTTAGCTTGGTTGCTC
GTGTGAACTGTGCCGAAAGCGAGAGCTTTACGTTGCGCCCCGCCTGATTCCTGCTCAATG
TTTGCTGTGCGGCGCGATTCCTTCGCTTCAAGGTGAGCTGTTTGCGCTGAGGAGCTAGAG
CTTGCACCGTTATGATGGAAACTTCTGCTGTGCATCTTGGAGGTGGGGAGAGAGGGGAAT
GCATCTTTTTTCTGTAATTTGCTTGGTGGTACATACATGTTGTACTAGAGTACTAGCAAC
CTGCAGTGGCCAATGGGTTGTTTAGATCCGTGCGGTTAATGTGGATGCAGGTTATCGGGA
GACTAGAAGGCCGTATTAGATGCTTGATGCTTGTACTCAGGTTGTCTTTCGAAAAGTCTG
CGTTGGGTCCTATGAAATCATTGACTGCATCAACTGGATGTAGTACTAGATATGCAGAGT
GTTCAGAATGTTCGTGTAAACTAGAAAGCCGTTTTAGATGCGTATGGTCAGGTGGTATTT
TGAAAAGACTGTCTTGGTTCTGTGAAATGATTGATGTGCAGAGTTTTCAGAATGTTCGTG
TTAACTAGATTAGTCCCATGTGCTGCCGTGGTATTTTTATGGGATGTTGGGCGATGTAGC
TTTGTGAACATGATACATTATTCATCTCGAAGGGCGTATCTTCCTGGAAAAGTTGCAATC
TGGTAATCTGGAAATTATGTGTCATGGAAGTCTCTTAACTTTTTGTGTACTTGCCATGCC
CTGTTCTGACCTCATGTCCTCTGAACATTATTCAAACAAGTTAGTGCTAGAGAAGGTATT
CTCGTGCTTCTTTGAAATAGTAATTGGCAAACTGCAGTGTGAAAACTCCTAAAGCCTCTT
TTCATGTTTTAAGGAATTTGCAAAACGGTAATGTGACTTAATCTCATCACCATGTTCCCT
TTTTTTGGTTCTCATCTTATTTCTCTACGACGGCTTTGGTTTGGGTTATTGAAAAATTGA
AGTCCCTAGTTCTGTCAGATTGAACATTGCTTTCTTGATAGAGGCGAAAACAAAGGTGGT
GTATGCATCATGTTTAGCTTTCCTTCTCGATGTTACAGTACAAACAGATATATTTGTCTT
TCTACTAATCTATAGCATGTACGAGCTGAGACCAGAACATCACTGCTTGGAAGGAATTTT
TAGAAGCAAAACATTGTACTATGATAGGGAAGGGGATTGGTCCTTCACGTACTCTTATGA
TAGAGAAAATATTATCAGGTCTCACTGGTTTCACATGGTACTATGATAGGGAAGGGGATT
GGTCCTTCCACAACTCTTATGCTTATTTGATGATGTAGTGTAGTGGGGTTTATGTTTTGC
TTGGTGGGATCAACCTTATCAGCAAGGTTCTGGAGTAAAGAGCTAGCCATAGCTGTTGTA
TACCTTTTGTGGACCCTAGTCGCTAAGTGATTCACTGATGGCCAAATGTTCTGCTATAGC
AGTGATGACGGCTATAGTGTCAACTAGCTCTGCTATTTTTTATCTTATAGCTAGCGATCA
CTTTGCTGTACCATATAAGTACTTCTACCAATAGAACATGCTAATTTTTAAAATCAACTG
CATTGAATGGCCTCAATGCATGTACTGACAGTAAAGTATGAAAAAACCTATCAAAAGATC
TCAATATCCTCCTTCTCAACACTCCAACATCCACACTTTATGATTGAATACTTACTGAGA
CGAAGATTGTGCTCTGGACTTCTGGTTATGGACTTTTGCATCAAGACTTGTCTTATATGA
CTCAATGTGGTATGCGTAAAGCATAATTATTATTGTTCCTATTTTATATTAAAATGCAAT
AAGTAGCTTTTGCAAGATCTTCCAATAGTTTAGCTTGCCGCTAGGATCTCGCCGTGAAAA
AAGCGATTTAAAACCTTACTTATAAGTATCTGCATGATATGGTATAGACAATTAGCTTCA
ATGCTTCCACCACTTCATAATAAAATATCATGCAATATGTTGTAACTTCTATATGTTTTT
GATAAGGTTATCTTATTATCTTACATGGCTTCAATTCACAGGTGAGGCCCCCTTTGAACA
ATACAAAATCTGAAACTGAGAGAACTTTTGAAAGCACAGATGTTGAGTATACCCCAGTTG
TACGGTCTGGAGGCTGGGCCGATATTGGGTCAAGGAGCGCAATGGAGGATGTCTACATTT
GCTGTGACAATTTCCTGCAAGATTTTGGACCTGAAAACTGTGAAGAAGGGCCCAGTTCGT
TTTATGGGGTATGATTTTATTCCAATAAGTCTGTCAAATTTTCTCCCTTTTTTTGGAAAC
CGGAAAGAACTGTTTTAAACGAAGTGATCACACTGCCACAAGAAGGGCAACTGTGATTGA
ATTTTCTGTCTTGATGTTTGTAATAATCGTCAGCAAATTTTACTCATTTCATGATTGATG
GACATCATGAACTCTCTACTGATAGAGTACATTTGTACACCTGACAGGCACTTTCTGTGT
ATGTACTGTTCACACGATTTTAATGTTTTAGGTTTTTGATGGGCATGGTGGAAAGCATGC
TGCGGACTTTGTGTGCAGCAATTTGCCAAGGTTCATCGTTGAGGGTGATGGTTTTCCGGG
GGAGATAGAGAAAGCTGTCTCCTCAGCATTCTTACAGACTGATGCTGCTTTTGCAGATGC
TTGCTCTGTGAACTCCTCTCTTGCATCTGGCACGACTGCGCTTGCTGCACTCATAATTGG
GAGGTATTGCCCTAACTTGTGCAACTTTAAGCCTTGTAGTAAGTTATTCTGTAGCATTAC
TGTTTAGATACTTGATACAGTGTTTTGTAACTACTTATTCCTCCTTACGGCCTTATGGTT
CCTGCTTAGTTATCTGTTTGAATAAATTCTTCTATATATGCAGTCTACACTCCATTTTCC
CACATATATTAGTTTTTTCTTTGGCAACGACAAGTTCATGTTCCTTCATTAGCTTTAAAG
TCCAAGGTTTATACATAACATATGCCTTTCTCCCTTAGTGAGTGATACATATATCATTAT
ATCTGTTAGCAAGGTTTTTTTATTTTTTGAAGTATTTGAGCATCACTTCCCACTGATATC
AGTTTCTTCTTCTTTGAAATTGAAAGTTTTCCTGTTCTTGTCATGCTTTTGAAGTGCTTT
AGCAATATATATGTGTTTTGCTCCTTTAGTTAGTAATATGCATGTCATATGTTTTCTGAA
GAATTCAGGGCATCCCTTCTATGCCTACTCTCTTTTTTAACAATGTGAATACCAGCATGA
TTTTCCTTTTTTGTTTCCACCTGTTCTTTCTTCTATAGTTTTGACAGCGTTGTCTCTGGA
AATTCTATGTTTTTACTTTAGTTCTTTTTCTTCCTTAAAATAAATGTTCTGCATGATCGA
CAGGTCACTTCTGGTGGCAAATGCTGGCGATTGTAGAGCAGTTGTATGTTGCCGTGGAAA
GGCGATTGAGATGTCCAGGGACCATAAGCCATCTTGCAACAGAGAGAAGATGCGCATTGA
AGCCTCGGGTGGTTATGTTTACGATGGATACCTGAATGGGCTCCTGAATGTTGCTCGAGC
AATCGGGGATTGGCACATGGAAGGAATGAAAGCATGTGATGGTCTTGGGCCTCTTAGTGC
GGAGCCAGAGGTGATGATGCGGAATCTTACCGAGGAGGACGAATTCCTGATCATCGGCTG
CGACGGGATCTGGGATGTATTCCGCAGCCAAAATGCGGTAGACTTTGCACGCCGGAGGCT
CCAAGAGCACAACGACCCAATCGCCTGCTGTAAAGAGCTTGTCGACGAGGCCATCAAGAG
GAAGAGCGGCGACAACCTTTCCGTGGTTGTCGTGTGCTTCAACTCCATAGCGCCCCCTGT
CTTGACAGCCCCCAGGCCCCGCGTACAGAGAAGTATATCCGCAGAAGGATTGAAGGAGCT
GCAGGGCTTCCTCGATAGCTTGGCCGACTGACATCTGTGGCTTGGGAACCCTGGTAACAC
GATGGTGATCCCATTTTTCCATAGCCTAGCTTGGAATTTAGGTTTAGTATGCGCAATCTC
ATAATCTGAGATGGTTGTTGTTGAGTAATGCATCACTGTAACATATTATGCGGCTAATTT
TATCTGCACCTGGAGGTGTTTATGTTCTTGTTTCGGACCCTGCTCAAGAATTCTCAAGTT
TGAAAGGTTAACAGAGATTTCAGTGGATTTTTCAGTGACTATTATGATGACTGCGTTTGT
GAAGCTTTTACAGTGCAACTGGACTATAGGCAGGCTACCAGCTTTGGAAAGCTGATTCCT
GTAGATGTTCTCATGTACGGTTCGTGTGGGCTTGCACGGTTAGGATGTTATGTACCGACA
TTTTGAAGGATCCGTGCCGCTGTTGAATTCATGCATTGTACTCCCAACGGATTGTTTGAG
CGGTAAGTATCCGCCCACGAGTCCATGAAAAAGAAAAAAAGCCGCAGGGACCAATAATTC
ATGTGTCGTGTGATGGAAATCCCTATAATAAGCGAGCTTTGTGGGCGTGCTAGGATCATC
AGATCACGCAAGTCTCACTCTTCTCGTCAATCTCACCCTTCATCATGCCAGCCTTGCAGC
TTTCTTTGTCGGCCCATAACCGTGGAGAAGCAGCCCACGATTCATAGAGAACAGGTCCCA
CACCCAGGAGCTTGGTGCTACGGCTTGAAGGGCGCGCAAGGATTTCTTTATCTATGGATC
CAGCTTACATCTTTTTTTCTTTTTCGAACTAAATCCACGACAAGAATTATACTCAACGTA
GAGCATGTGTCAACAAACGAATATGTAATCTGATGAAGGCCCACTAACATTGCGCAGTGG
AATTTATTGAGTGGCATTGCACAGTAGTCTCGGACAAGGACAACAACCTCCACTCCACTG
GGTTTCATCAGATCCAACAGCACAGCAAGTGGCAACTGAGAAGGTGCCACAAAAGCGTGC
ATCACCTCAGCGTTTCATGAATGGTTTCTCCATTCAATCATTGAGCCCTAGACCAGACCA
GACTAGGAACTAGGCGTGACCACGCCCACGCACGCTCTCTTGCGTAAACACCAAGCCTCG
CAATCTCCCTCCCACCGCGAGATTCCATGAACCCCCGGCCTCGCCACTGAACCGCGCCCC
TCGCGAGGCAGCCGACAGCACAAGAGGCTCCGGCACCAGCCACCAGCCACGGGCGACCGT
CACATCGTCAGCCGTTAACCGCACCAGGACCAGCCATGCACACACGCACGCACGTACGAC
CACCGGCTCCTGCGCTGCATCGGATGCCACTCCGGTCCGGAGCCTATCATTGCGTCCCGG
ACTCGTTTGATCTGTCCAAGCGAGAAGCCGGCCGTCTGCGTCTTCCACAGTGGCGCTGCG
CGCATCATTGCGAGGCGCAGCAGCAGCGGCGGAGGAGCAGAGCACTGAGTGAGTGAAGCG
AACTGGTCGAAAAGGACTGGACTGGGTAGGCAACCCAGCCTTGCCCCCGTAGTGGGATGG
CCCGTTGAAAAGCCCCGTCTTGGACGCCAATGGCTGATCTGTCTTCATCACCTTATTGTT
GTTGAAACTCTAGCAAGATATTGTAATGAGTGGGAGCTAAGGACAACTCCGACGCACCAT
CTCAAATTGTTAAGCACCATCTCAAATTGTTAAGCCGTGTCTTTCGAGGATAAACAGAAA
GAAAATTCGATTAAATCCGCAGAAGCAAACGGACATTTGTTCGTTTTCTGTTCGCTCCAT
CCTGGTCCAAATTTGAACCGCGTTTGCGTTGAAGCGGACAACACACGGACGGATGACACG
CGCCCTTTTGTTCTTCCTTGGTCCGCCGTCCTAGACACATACGTCCCCATTTCCCTCCTT
CCTAAAAAACCCTCCCGCTTAACCCCTTCCCTTCCTCCGCCGAGGCCCCCCAAAAAAATC
CAGCGACCCAGCCGTCGTCACGCGGCCCGCGGCAAAGAAGAAGGGTATGAAGAAGATGTG
GTCGGAGCTCACGCCAGAGGAGCAGGAAGAGCATAGGAAAGGAGTAGATAAAGATATACT
TGAAGCTCCAAAAGAAGAAGCTTGACAAGAAGGAGGTCACCAAGAGAAGAAAGCTTGACA
TGAAGGAGGCCGCCCAAATGAAGAAGCCCGTGATCGAGGGCATCATTGCCAACATCAAAG
CAAAAAAGGTGGCTCTTGCGATCATGAACGTGGACTCGACAAACATGTCTCCGAGAAGAA
AGAGTTGGTTCGCGGACCGACAAAAGGAGATCTTCAATCAAGGCGGCTTGGACTAGGAAA
GCCTTGGCTAACGTGTGACAATGAACTATGTACGATCTTTTTGAAGGCTGACTAGTGTGC
TGCCCGTTGGATTTGTTGTCGACGTGCAAAACTTGTTTATTTTGAAGGCTGACTAGCGTG
CCGATCGCTGGTTTTGTTGTTGGCATAAAACTTGAAGTTTAATCATTTTGTAGACTGACA
TTTGTTTGCCCGTCACTGGCTGTGTTGTCAGCATGGACTAGGGTCACGATCATGGATCTA
CATCCGGGTTTTAAATTTGCTATTTCCCATGCAGCCCGGCTGAGATGCGTCGCGTTGGGC
AAAAGTCAGGTTGCATGCGGGGCGGGATGTGGCTGCCCGCCAAACAACATAGCGGGTGCC
AGCATTTTTAGCGGTCACCGCTAATTGTCCGCCTTATGCCGCTTGATTTCTTGCGGATAA
TGCGGCAACCCGCATGATCCCGCTATAATCCCGCCAAGCTAGCTACTACTTTTGACGCAC
AACAGCACCTTTTCTGAATCCTTCTTGCCTACACGGTGCGTTGCCTTGAAATCGCAATGC
AGGGTGGGTCTGGACCAGTTTCTTGCCGCTTTTACTTAGTACAATACTCAGTAATTATAG
TGTGACCAGTCAACCAAAATAAGTAACGTATAAGTGCATTGCATTCCTGGGTGCACAGGC
TAGCATTGCATTACATGTGGAAGTTCAGGTTCGTAACATCTGAGGCATCACAGGCTAGCA
TTGCATTACAGTTGGAGAAGCTACTGTCTCTCCACCAGCCAACCAGTACAGAGTACTCCC
CCTAGCCACTGCATGAGGATAATCGCCATATGAACATCGAGGGTAATGTTCATAATACTA
CACCCAGGATTTTAACCACAACAAATACAATGTAACTTTGCACAGCAAGACAGCAAAAAC
ATGGGTGGAGATAAACATCAGCTCGATGTCAATTCGAAATCCTTCCAAATCCATCTTCTG
TGTGAGCACTCAACGCATCATCAGCTTCTGTGTGAGCACTCAACGCATCATCAGCTTTCC
AAGTTCCTTCTGATTCATGTACCTGAGCAGAACAAGGG