morexGenes - Barley RNA-seq Database

Contig contig_1566213
Source Contig contig_1566213
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1566213 (8027 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1566213

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13673	2	1864 bp	MLOC_13673.1	Available	Available	LOC_Os03g44610.1, FRAME:-2, EVALUE:1e-164, 13103.m04802 protein IQ calmodulin-binding motif domain containing protein, expressed
CDS Structure of MLOC_13673

Contig Sequence (8027 bp)

>contig_1566213 8027 assembly3_WGSMorex_rbca.fasta
CCGCGTTGACGCAAATCCGGCTCAAAAATGAACCGGGAATGGGTCGTCCGCGGACGAAAA
CCGGACGTGTGTTCGTTTGGGTCGGCGCGTTGGGCCGCCTTTTGTGTCCGCATCGACCCA
AACAGACGACGGCGAACGAAATGGATCGTCCCATTGAAGTTGCTCTTATCGCAGTAAACT
GCTGAGCAGCCACGTGAAACGGAGGCGAACAAAGGAAGCGCAGGTTGAGCCTCGTGTTTC
AATCATACACAAATCCAGGAAAAGTTGCAGCTTTTGACCTGCATGATTGTACTGCCCTAA
CCCCCAACGATGCAACAGTACAAGCAGAGGCCGGTGCTTTGCAAAAGCAGGATCCACATG
GAACCTCCACGGATAAAAAAAGGAGAGCTCAATCATACTAGTACTCCTACAAGGCAGCAC
TGCAGCAGAAGCTTGTGTGTACAACCAACATACATGTATGAATGTATGATCTCTACTGCT
CATACAGCACAGATTGCCCAAACACCCAGAAATGAAAAATAAGCAAACGAAATGAGAAAT
GAAACAAAGGAGCGTACATGTTTTGTCATCAGAAACGAAAAATTAAGACTTCACAACAGC
ACAATCACTTGTTTCAGCCTCCAGTTAGAACAGCATACAAAGATGGCAAAACATAAGCAA
AACCAAGAATGGACAACACAACAACACCAATGGCAACCGGCAACCATGCACAATGGGAAT
GTCGAAACACGCCTGTCAATTTAGATGCGCAATCTTTTTACCGAAAAAAATTACTATGCA
CGGAGATAAGGCCTGCACAACTGGAGAAACGACACACCAGGAACGGAACGGAACTGAACT
CATCTGCCCAAGTCAGATTGGAAACGGTGGTATGTGCAATTAGGCCTGCAACTCAACTTG
CTTCCGGGCTTGGTTAGGCGCATTCGCCCGTGGTTTCGGGTCGGACTTGGCACTGATAGA
TCGTTTCGTCGGATTTCTGTTGGTTGTCTCCTTTGATGCTCCACCGCCGACTGTTAGAAA
CATCAAAACTGGCTGGATTATATACTGCTGGTTCATGGAAATGCATGGCAGAAAGAAGAG
ATATGTATATAGAAAGTGAGAGTTTAGAAACAACTAACATGAGAAATCCTTGGGATTCAG
GCATGTATGCTAAGAAAACGATTAAAATGCTGGATGGGTGGTGATTATTTATATATTTTA
CCGTTATTTGGCAGGGACAGACGCTTCTTGGCCGATGTATTCAGCTGCCCGCGCCTTTCT
TTCTGATTGAGCACAGCCAAGGAAGCTATATCTATGGGCTGGGAGCTGACTTCCTCAAAA
GCCTCATCATCCGATTTCTGCTTTTGTTTGGATGTTCCTAGAGAGGTGGAAGGCAGTACA
CTTGACGATCGCCCAAATGAAGTGAAATTTACATCCGAATATGACTTCCTATGGTTTGCA
CCTTTCTTCTTGTTCAGGCCATTAGGAGGAGTGACTGTGCTTGAAGTTGGCGCCTTACCC
TTTGGTGTGACCTGAGGTTTTATTTCCTCATCCTGATTGTCATCACACATTGGCATGCTT
TCTTTGGCATTGTTGTCAAGTAACCTGTTCTCCCATGGACGTGCAGCCACCCATCTCTCT
ACCCAGTTTGATCCCCAGTGGTCGTCGTCAAGTTCGGATCCTTGCAGATTTGTAGGTTTC
TGCTGCCTTAAACCAGCTTGCCGCTGATCAAGAGAATAACATAAGTTAATGACTTTGGAG
AGGTTAATAGATGTGAAAAATTATTACAGAATTGTCAGCATGAGCATTAATCATCATCTA
CATGTTAAGATCGTTATTAAATGCTACCTATGTAAAACCAGCTACTGAACATCCCCTAAA
AAATACTCCAGAATAAGAAGAGCAATACTTTCTGAAAGTGCCCTTCTACACCTGAGCTCA
AACGAGCTCGGGATGAACAGTAACTCAAAAACCATAAAAAAAAATTAAAAAGATCTGAAT
TTTTTTACGGCAAATTTTAACAAATGTTTTAAGAGCTTGCAAAATTTCAGCACGAAATCA
CATTTGTGGAAGTCGTGGCAAGTAAAATTAGTGCTTCAATATGCTTTCAAAAATACATTT
TCAGAGTATAAAAAAAATGCCACAACTTCCACAAATGTGATTTCATGATGAAACTTTGCA
ATCTTTAGAACATTTGTCAAAGTTTGTCATTAAAAAATTCAAATTGTTTGGACATTTTTA
AAATATTTTTTCAAATTTACCGTTCACCCGAGCTCAAATGAGCTCGGGTGCAAAAAACTT
CACGTCCAATACTTTCTCCTTTCTCTCGACTACTGAGCGAGGATACATGATCTTTCCTAT
TTTCTAGTTTACTATCTAAATTTCTAGTCTTCCAAGAGGTTGCCTTTAACCATACCAGTC
ATTTATGTTCATAAACATATGCAGCACCCGGTGAAAAAAAAACAGTGAAAAATATAAGCA
CATTAGATATATGGAATTACTGTTTCGGAAATTCCCACAAGAGTGGGTTTAGTCGGATCA
TAGTTTTCCAAAACATTGATTTACTATGAAAGTTGATGTCTTTTTCGCTAGAGTGTTAAA
TAATTCAAGAGGAGAGCAAGCATGAAACATATCTGCTAATTGAGTGACCTGATTAATGGA
TCATGAACAAGTGTACATTCAACAAACAGTTCGATTCTAGATCATCAAGTTAACCTCACT
TAACAAGTTTCAATTAGTTAATGTGTTCTGGTATGGTACCCTCCAAAATTACCTGATGGG
TCAACGCATATGCCATCGCTCTCTCGCGTTTTGCAGCAGCTTCCTGCCTTTTCAGTACTT
TAGCTTGCATTTCGGCCACAGAACCAATACCGCCACACCACCCTTCCTGCATTTGTTGTT
GCAGAAGTAAACAAAGTTATTCCTTAAATAGCATCTAATCGATAAACAAAATTATGCCAC
CCATGTATGACTTGCTCTATTTTTGCATTTCAGAAAGGAAAAAAATGGTCACCAAAAAAA
TTGTTAATGATCAACAGGTATAATGGTAATGTATATATTATTGCTGCAATAATTGGCAGA
ATATCAAAGGGTTGAAGAAAAATATCGTTCATTCAGGATATACAGCTAGGACAGATGCAC
AATAATTATATGATTGGTAGTTAGGAGCAAGTCAACCCTTGAAAATATTTTTTCTTGTCC
CTAATCCATGTCAGCCGATGAACCGTGTTTAGTGCGAGTATGTGACGGCATGTATACTTC
CATCCTTCAGCATACCGCTTGTAATTAACACACTGAATTTATAAAAATAAACTCTAATAT
CCAGTTTGTCTCCTTCCATGACTTGCACATGCATGTGTTAAAGTGTAGTTTGTGTAACTG
AATGATAGATCGGGATTTAGGGACATACAGCAGCATATTTATTTCTGAGGGATTGGGTTG
CCTACCTCAATTTCTCGAACATGGTTCTCACAATCATCTTGCTCAGGGACCTTTTTCCGT
GCCACTTGGTTTTCTAATGCAACACCGGCTTGCCTTGCTCTGACACGAGCTTCGGCCCTT
ACCAGCTCGTGCATACACTGAAGTGTTTCTGCTGTCTGCTTTCTCACAATATGGCCCCTC
ACAAGGGCCTGGAGTAGAACTATACCTTTCAGTGCTCGCAAAGCCCGTCTAGCCTATTAT
GTACAGAAGCAACAAGAGATCAACATGTCAGAACCAGCAAACTATAAATAGATGCTTGAA
ACCATGAACTAAAATATTAGATGAATAAGAAATAATTACATATCTAGACAACTTATAATT
TTAATTCAGGGATAAGATTTGTTTTCACTTGGTCGTTTCCTGATCATTGAAGAACAAATC
TCTATTTCCCTTTGTATGGGCTGACAATCTCCGGGTTTAGTTAAACACGAATGTGGGCAC
ATTCACTATATGAGAGTGGTAATGTTGCTTTCTCGACGTGGCAAAGAGAGTACATGATGC
TATGCATTGTGTAACACACGGTGCTCAAAGATATAGCGTACCAAGAATGCCCGAAATGCA
GACTGAATAACTGTTGCAGCCAAATCCCCTTCTGTAAGAAGTTCTTCGGTCAGAGAAACA
TGTGCATCACGTGATGCACTTTCTGATGAAACGGAATTTGAACCTAACTGTGTGTTGGTG
CCATCCGTCGATGTTTCGTTAGGTACTGCAAGTTCTTCTACTGCAAGATCCAGAGAATGC
TTTCGTTTGTGTAGCTGTCGAGCAGAAGAGCTCTGCAATATTTATCAAAACCATCATGAT
CGAAAAGTAGAGCAGTAACACTTGTAAGTCAAGTGGGAAGATTCTAAAAAACAAACCTTA
ATAGTGTACACTACTAATTAGGAATTCATGCTTGCAAAGTAATACTAGTACAAGGTACAT
GATAGACTAGAATACATATTACAGTCATACTTAAGGTTGATTTAAGTGGACATAAAATGA
AATAGTGTATCAGAACTCTTACAGAAGCTATATGTAAATGAAATAGCAAACTCCTGAAGT
GTCTGGAAGTTTAGTTTGGTCAAATTTACAAACTGACGCCTTCAGAACTAAAATAAACAA
TATGTTTCAAGAAGACATTACTTGAAAGAATAAAGGACAATGCAATCATCTAGTGATGCA
CAAATCAACCAGCTATCTGTTACAGACAAGTTAACAAATTTAAAACTTAGTACTAATTCA
GCGACAATTGATATGGACCGGGGGGGGTACCAAATTTATAGTGTTTTTTAACAGCCCTAC
TCATCTGCATGGTATTTATAGTGTTGATACAACACTGGCATCCACAGAGTAACTCTGATT
TTGGAACTACTGACAGTGGAGCAGAGCTGTTGAGCATCAAGCCCATGACAAAGACATGCC
AACAACAGCACTTGTGTGGCATCTGACAAACCAAATTTGGTACACCATCCACTTCTGCAG
TTTTGCTCATTCGTTAAGATTTGTCATGTTCCCAAATCCCCCATAGAAAGACAAAAACCA
AAAGCATGCGCACCCATCAAGCTGTGCTCATAAAAGAAGAAAACAAAAACAAAAGACAAA
CAAACTAATCATAGGTCCACACCACATAGTTCAGCCATTCATTATGATTACGCGCTATAG
ACCCAAGGCGGATACCATGACTTACGGCTTCGCTGCTCTCGGCATTTTCTGCCTTTTCTT
GATTTTCTGAACCCCGCCCCTTTTCCTGCTTTCTTATGCGAACCAGTGATTTAATCCACT
TGGCCGAAATGCCCATGGTAACCCAGCCTTTCCTTTCTTCCAATCAGAGAGCCTAAGACC
TGCATTCAGAATATTGCAATGTTACGGTGCTAAATAAGCAAAGCTGCTTCTGCTTGAAAC
TTAAGTAAAAGAAGAAAGATGACCCACAGCATAGAACCAAGAAAAACTACATAACAATTG
CTAGAATCTCGCGCAGTGCATCCTACAATAAGAGTTCGCACATGCAAGTTGCTTCCAATG
ATTACTGGCTGTCCAGTAAAGAACCTAGGTTGTATGATAAGGTCAGTTGGAAGCAACAAA
AATATTCTGCCATTCCTTGGCTGATGGTTTGCCATAAAAGTATACAATACCAGTCATGAC
TACGGCAGCAAACTAGCAGAGATGCTGATAGGTAATCCTACTCCACCACCTAATATACAG
TACACGCAAGGATTTTTTGCACGCTAGGCCAAAATTGAAGAACAGTTCAGCAAACTAGTA
TCAAACCCAGAAAGGGAGAGAAACAGAGTTTCAGAAACTTAGGCATGGTCCTGCAAGATG
TAAGCAGCATTTGTACCCTGTGAATGCAGCTAAAAACTGAGCAAAACTCACAAGTAGTAA
TTCCCAAGAGGGATACATTCCAACACGAAGATTTCAGGGGCTGCATTGCAGGCGCTAGGC
GACCCAAAATGTAAGAAGTTGCAGAACTCCGAGATAAGAGTTAAGGCCCAGCCAGCAAGC
ACCTTGAAAGTTCACTGTAACCTTTACAGCGAATGAAGACACGGCCAGCCCCCAAAAAGA
AACCCGGCTTTGAGAAGGAAAGAACGGGAGCGGGGCGGAGATTGTCAACAGAACCTCTTT
ACGGCACTCCGTTATAAATCTTGCGACAGTGCAGCGACTTGGATGGCACACGGATTCCAT
GAGAAAATTCAACAAGAACACACCGTGTACCCGCAATGGCAGTTCCAAGCCACCGAACGC
GCGCACAAATCAGAACCGCAGGCCGCAAGACGAGCGAGCAGAGGGACGCAGAGCTCGGAC
GTTACGAAATTCCCCCAAAAAATCTGGTGAGAGCGGGGCTCGAATCAAAGAGCAGGCCCG
TCAATCATTCGCTCGGGGGTCTCGAACTGGACCAAATCGCACCGGAGATGAACGCGCAGC
CCAGAGGCGCTCGCCGAAATGCCTACTGGGGATTCTGGACATGGGATGGGCTGGGAACCT
GGGACTCACCTGGGCGCCGAAGACGATAGCCTGAGACCACCAGGAAGCTGGAGAGTGGAG
AGCATTCCTTCCCTCCCCTCCCCTCCGCCGCTCGCCTCTTCTGTCGCGCGTCGTGAGCCC
CTCTTCTTTTCTGCCTCGGGGTGGTGTACTCTTCTTCTTCTCTCCCTCTTATTTGCGCAC
TTTTCGTTTCTTCGAAGCAAAAAAATAAAAATAAAAAAAGTTATGACAAGAGCTCACATA
GAAATGATCTGTCGAGTGCTCACATCGAAAAAGTCTGACACCTCAGTTTTATCTCTTGCC
ACCCATTTCTATGAGGAGAGTTGTTGAGTAAATATTTTTTACTCAAACTAAGCGTGTACA
ACTTTTTTTTACTAAGGGCAATGCGGACGTTTAAATGGCTTGCAAACGCCTCCATCAACT
TGTCCGGATGCAGTTTGTCACCCAACGCGGTTATGTATTTGTCAGTGGACACGTCTAGCT
ATCCGAAATCCCGTAAATCGAACGCAAACTAGGAGGTGCTTTGCGCGAGTCCGGGCCTCG
GCCACATAGGACTTCGACACCGCCGGCCCATCGAAAACCAAGGCGAAGCCCGCATATTTG
AAGCGTTCTACCTCCTGGATACTCCGGCTGTGGCACGCATGTTATTATTTACTCGCCTTT
CCGCCTTCCCGCCGCCTGGACCCATACAAAGAGTTGTCGGAGTCAACGGAGGTGAAGGAT
CGAGAGAACATGGTCGCTCGCAAGATCAACTCGGCGACACACCAAGCCCACCATCTAAAA
ACGAATGCAAATGATCAAGAGGCAGGCGTCGTGTGGGGGGCATATACACGGGACATGGTT
GGACGGGGGCGACAGAAGGCCATGCTCCACGCCTTGGCGAGACAATTTCAGCCGCCCTAC
TTGTACGACGCCAAACAATTCGATCATCAGCGGTCGTCCACGCCCATCGTCGTTGGGTAC
ATGACTTATTATGTCGGTGTCAACACAACAACGCTCATTCAGACGGGGACCCGACCTCCC
CGTGTGTTGGGATGATGAGCAACCCACGCCGCAAGGTGTCGCGGCGTGCTTGATGACCAA
CTGGAATGCCCTTGCGAGCGTCTTCTTACTGACCGTCGCTGTCATGTCGGGGAGGCCGAT
CTCGTGCACGAGCATGCATGTTCTTGGGCCACGTTGTCGGGGACAAACCAACCCTCCTCG
ACGACAAACATCGAGAAGCCACCGGCGATACAAATGTCGGACTGAAGTAGACAAAGATGA
ACAAAAGACATTGTGGTTATGGCAATGAATGCTCCGGCCGTCGAATGACCTGTATGTTGG
CAACTCAACTCGGCTCGGCACATAACGGCACAACAAACACAATTTACATGGCGACTTTTA
TACCCGCCTTGCTAAGCACCTAACTTCAACTAACCCTCATGCGCACGTCCGCACGAGCTC
CACTAAGAGAAGTAACAACATACATATCATCGAAACATCGAATAAATACCAATTTTATAT
GATTATTTATAACAAGACTTTTCCCATGTCCTCGGGAATAATAGTTACTACTCATACCTC
ATCAACATGTTCAAGATGAGAGGTGTAATAATTGTAATTAAGGATCT