| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location | No map location | No map location |
Predicted Genes from contig_1566045
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_13598 |
4 |
2693 bp |
MLOC_13598.3 |
Available |
Available |
LOC_Os09g25160.1, FRAME:+3, EVALUE:5e-151, 13109.m02404 protein retrotransposon protein, putative, unclassified |
| MLOC_13599 |
4 |
2016 bp |
MLOC_13599.2 |
Available |
Available |
LOC_Os06g02000.3, FRAME:-2, EVALUE:6e-119, 13106.m00113 protein adenylate kinase, putative, expressed |
| MLOC_13600 |
1 |
587 bp |
MLOC_13600.1 |
Available |
Available |
None |
CDS Structure of MLOC_13598
CDS Structure of MLOC_13599
CDS Structure of MLOC_13600
Contig Sequence (10799 bp)
>contig_1566045 10799 assembly3_WGSMorex_rbca.fasta
CGCGCTGCCGACCCATATCTAAAAACAGGGTGGACGTCGATCGGACGGCCGACCCAAACG
AACAAAAAACGAACGAAATCGTTGTCCGTTTGGGTCGGTCCATTGGAGTTGCTCTAATGA
CTTGTTGTACGGAAAGCCCAAGCTTCTCAACAAAAATAACCTTATTTTCCAAAGCTCGCA
CCTACCACATTCTGTGGGAATTTCCATTCTATGCCGCCCCACCTACCCATCATGCTCATC
GGACGGTCCAGATATAATCTGGTGGATTCTTTCCGGCAAGCTGACACATGCATCACGTCA
GCCAAAGCCACCGTACAAATAGACGCTCGAAATCTTAATTCTCGTCACACGGATCATGTG
GATGCATGGGCTGAGCGTTGTGTTCAGATTGACATCTGCTATGATCATCAGTAGTACACG
ATAGCCCAGAAGATATGCTCAGCTAACTACGCATTGACCAGCACTAATTCAAGCGATCCT
CAAATCTGTCAGAATAATTCGTTTCCAATCACGTTGATGGCAGCGATCCCTCCATTCGAT
ACTCCGCTATAAGACCGCCATTCCATTGTCTCCCAAGTCGCAACAACCCAGCCATTTCGC
TTCCATTCCTTCCTACACCACCTTCTTCCTCGCAGCGATCGGCGTCGTCGTCCATGGCTC
GCAAGAAGGTGGCCATCGAGTACATCGCGAGCGACCCGACCCGGAAGGCGACGGCGAGGA
AGCGCGACATGGGCATAAAGAAGAAGGCCGGCGAGCTGTCCGTGCTGTGCGGCGTCGACA
CGTGCTACATCATGTACCGCGAGGGCGGGGCCTCGCCACCGGAGGTGTACCCGTCGGTGC
CGGAGGCGATGCGCGTCATCGACCGCTTCAGGGCCATGCCGGAACTGGACCAGTGCAAGA
AGAAGATGGACGGGGAGGACTACGTCCGGGAGCGCATCGCCAAGATCCAGGAGCAGCTGC
GCAGGGCGCAGCGCGACAACCGCCAGCTCGAGACCACGCTGCTCCTCCACGACGCCCTCG
TCGGCCGCCGACAGGACCTCGCCGGCGCCGCCATCGAGCAGCTCGTCAGCCTCGGCTGGA
TGGCGGAGAACTACGTCAAGAAGGTGAGCGACTGCATCGCGTACAGGAGCATGCAGCTGC
AGCACGCCGGCGTGCAGGCTGAGCCGCCGCATTACGCTGCCACCGTCGCCGACGTGGAGG
CGCCGCCACACCAGCAGCTATAAATAAATAAAACACACGCCCTCGGATCGGAAGTCCTTA
CTGATTTGTGCACCGAGTTTAGTATCTTTAGCTTTCGTAGTACGTGCTCTGTTTCCCTGT
CCCTTGGACAAGAAAGAAAAACCTGTGTTTCTTTGTTAAAATGTCACACGATCAAATTCA
GTACAAACCGCAGTCTTCGTTTAAATGTTTACACGATCAAATTCACACAGCTTAATCGAG
CTCACAACACACCAGATGAATACATCACAACACTAACGGTTTCGTTTGCTGTACTTGCTT
GCTGCTCCATCTTGATCCAGGACTGAAGGGTGCCACTGCCACACCAAACATCTTTTTAGA
AGATGGTCAGTTCCTTCTGTCTTGCATATCGAAGCAGCCTGAAGATCACACATGCACCTG
GTGTCATTCATGTCCAACAGTGAACATGATCGAGCATGCTTGCAGACTGAATATATAAAT
TTCAAGTAACCAGACTGAAACTATTCAATCAACTATCTGGACCATAGGCACCCTGATGAA
GCAGTTGCGTACCGCAGAATAGGTCAAGAAACCAACGCTTGAATGGATTAGTTTGCACTC
TGCTTACGCCGCTGCCTTCGTTTGCCTAGCAAAAAACGCCAGAGTAAAACGTGGGTAAAC
CATAAAAGCTGATACTACGATTTATTTCAAAGCTAATAGTTACATGATGCGACAATGGAT
GTAACCTGAGTGTTTAGTTGCGCGAATATGACCTTCACGTCTTCGAACACCATGTCTGGT
TGCCTGGTACCATCAACCTGAGGGGCAGGACATAACCAACAATAGTTAACTATTTTTCTC
ATAAATCTCACACGATGTCACCAAAACAGAAGGCATTTCTCATTATTGCATCTACGTTAT
CATAATTTTCACAGTGTACGAGATTTGTACAATTATATCATTATTGAAAACTTCAAATTG
TCTAGGGCTCAGAAAAATCAAAGCTGAAAAGGTAGAGCACCTGCCATTCTGGTCAAAAAC
TATTTCTCGGAAAATAAAACGAGATTCAGTTTTCTAGATTCTTGAATAACGGATATATGT
ATTGGCTTGAAAACTAAGAAGGCAACATATATTCATGATCTTATTTTCTAAATTCTATGT
AGTTACTCTGTACCCTTCGAAGCTTTCCCATTTTCTCATAGTGCTGAATAACAGGCAGAG
TTGATTGCTGAAAAACTTCGAACCGCTGCCGAATGGTTTCCATGTTGTCATCATCTCTTC
CCTGTAGAAAACCAAATTGAGTGACACATGTTAATCAAATGAGATAAGTTGGGTCCAAGG
AAAAACAAGCACAAAACCTGATTTCGGTGTAGAATGCGCCGCTCCATCTCTTCCCTTGAG
CAGTCAATCAATAATACGAACTCAGGTTCTATGTTAATCTGATAGATAAATGTATATGTG
TGAAGCATACAACAAGGGATTCAACTGCTTTTGGCGCTATCATAAATACATAGAAACATT
CTTACAATCTTCTCGTACGCTTCACGGTTCTCCTCATCTCGCGGAAATCCATCAATAAGA
AACTTGTCATTTCCACTTGCAAGCATGGCCTTTAATAGTAGCCTGACGATGATCTCAGAA
GGCACAAGCTTTCCTTCATGCATGAGATTCTTGATCATCGTACTAATTGAAACAGGCAGA
CATCAAAAAGAGATCAAGACAATGATTAGAATATAGGAGTTTATCTACATGAATCGGGAC
TAGGTTGTTATACCCTTGCTCGGTATCTGATTTAACTTCTTCGCGAAGAAGATCGCCAGC
ACTCAGATGGGTAAACCCAAACTGGCTCACAATCTTAGCACACTGAGTGCCTTTGCCACT
TCCTGGCCCTCCTGCACCGGCAGTATAAGCAATGGAGTGATCAGCTCAAAGAGTTAAGCA
GGGCATATCATGGACTACCGTATTAGTCTGTCTAGGAGATGTAATACCTATGACAAACAC
AACAGTTATCTTTTTCCCGGAGGGGAATGACCCAATCCAATCCTGCATCAAACCGAATTA
GTAAAACAGCACATCATGGACATATGGAAACTCACAGATACCCATTTAGTTTTGTCAGAG
AAAATCTGGCAACATAAAAGTAACAGATTTAGAGGACACCTTATAGGCACAACTGGGCAT
AAGATTTCTACGATAAATCAAGTTATTTCTGAAGACATAATAATTTTCCTAGCGAGGTGA
ATGATATCCTAAAATAGCGTCAATTAATTTGGACCGGAGGGAGTACTAGATTTACCTTGT
GTACTTCTACTACTTCTGCCATCTACTTCTGTCAGCAGCAACACCAATTGAACTCTGAAT
GCAACAGGTACGTAGTTGAGTTTACAGATTCAGATAAAGAACACGAATGAAGCAAAGAAA
CAAACAGGGTTTGATTCAGATGTCACTGCAGTTTAACATTCTACAAGTCTGTTCCCACTA
TATGAGTATGACCGCAAATGCGGTTGCTTCCAAATTTCCTTTTGGCGCTTGCACACAGTG
ACACAGGCCTACAGTTCCACTAGAGGCTTCAGGAAGAGACACCTAACACTCGTCTAGAAA
TTTCATCACAGTAAGTAGTTACTAGAGACTTCACGAAGATGGCATTCGTATACTCTCTCT
AGTCCCTAGTCCAGTACTCCTGCATATCCAAGAACAACTGACCGACCGATATATTAAACA
AAATCCAGGTCAAGCAAAGCTAGATTTTCTCCAATAATCCAAGGCTGGAGCATAAGGCTA
TACGTTCCATATTAAAAGAAAAAATACATCTAAAACTCACCGAAGATTCCGGAGGAAAAC
GCCATCTTAAAAAGGTGAATGGAGATTTTGCTGCTATGCGCTACGCTGAGATGAAAGATG
TGCTGTGCTCTCCCATCCAAGATATAGAGATGGCTAGCATGACGAAAAAAGGTAGGAGAC
GGGAGGAGGAGGAGGCTTACCGGCCGGAGAGAGCTTGCCGTTCTTGGCAACGGTGGAGCG
ACGGCGACGGCGATGTACTGGGGAGGAATTCGATTCTGCTGGCTGGTAGCCTCGAGAAGA
AGTAAAGGTAGCTGACGAACGATTTGCGCAAAGAAGAAGAGACGAGAGTGTAGGTACGTA
GAGAGCAGAGCAGAGCAGAGCAAAGCAAAAGGAGGCCGGCAAAGGAGACGCGTGTGGAAA
GGGATTCTTGACACGTACTGTTGCATCTCTGACCAGCAGTAGAGAAAAGTTGTTGCACTA
TCCATTTATTTACTGCTGTTATTATTTGTTGGAGTATATATTTTCGACATTTGCTATATG
TAAGTTGTGTCTGGAATTTCCCTTTACTTTTGGTAAAAAGTTGTTTTTCTAAAGAAGTAG
ATGAGGGGAGAGGTGCGAGCAGACCTCGTGGGCGAGACAAAAACATACGAATCGACCATT
TTCAACGAGTTAAGTTGAGTCGAGGGCAAAAATGGGTATGACCTATGCAGTGGTATAGGG
AGGAATCAGTGTGGATGTAGCCGAAGATCAAAATCTTCTGACACGAAATGACATGAAATA
TAGTATCATCCCTCATTTACTCGCTCATGCTAGCGCTCATCTCATGCCTCCTTAACAATG
GCCAATGAGCTGCATGGGCGAGCTCTCTCTTGCTAATTAATGTGGGATCAACTTGTATCC
GTCATGCGATTCGTACTCGATGGAGTGTGTTTTGGGGTTCCCATTTGGCCACTCATTGAG
ACTGGGATCCTCCTTCGCGGCCTTCGGCGCGTGAGGTGATCCTACGCCTTCTCCTCGGCG
ATGAGGTTTGCCTTCTCCGTTATCCTTATTCGAGAATGTTATTCAGTCCCGTCGCGAGGT
AAGCGACATGGCGACGGTGAGAGGGAAGTGGGTGGTGTGTTTTGGGCTATTCAGTTGTGG
CTATCAGAAGGGAGGTGTAGATTGTAGGTGACGGTGTCTGGACTAGAGATTATCAGTAGA
TGGCTCGCGCGGGATGATCCGAAAAGTGTTGAAACCGCCCTCCTGCGCAAGCGGATGGCA
GATGGAGGCCACTCCATATCAACGCCCCGTCCTTCAAATATAAAGTCCCGTGGGTTGTAT
ATGGAGCGCACTCCATAAGCTATGGCGACCGAGTGCTGGATGATGACTAAGAGTGAGTTT
TTTCAGTTATAATCATTATATTGATGGTCATTATATCGATAGAGCGATATGATTTTTCTT
TTGAAAAAGAGGATGTCCCCCGACCTCAGCATCATGATGATACATGCAACCATTTTTATT
AAATTCTGAATTCGAAACAAAACAATCCAAATGTTGTGTGAAAAATTCCCAACAAAAAAA
GGATTACATGCCCACACCGTCAAGTGAAAAAGAAATAGGCTACGATGACTAAACACATAG
CCTATTAGTGTGGCGTCATCCATATCGATTGAAGATATCCAGTAATACCGTCTTTCATCG
GTTGCACCCAATAATCAAAGTCTTGCTGGACTCCGCAGGTGTGAGTAAGGACCATATAAG
GATCCAAGCAGTAACTCTGTAACTGCCCTGTAAAAAATTGTTGAATTTCTTTCTGTTAAA
TATCATATCATTTCTGCAATTCTATATAGCCCAAAGCATGGCACAAATTCCTATTAGAAT
GTGTTAGATACGGTGATATCCACTCCATTGAGTCACGTTTCAAATAACGTGTTCATATTC
ATTGAAGGGGTAATGTTAAGAGCTATATGAATTGTACGTCATAATAGTGTTGCCAAAGGA
CAATCAAGAAAGAGGTATTTGATAGTCGTTGTTATCATAAAAACAGCATCTAGAATTCCC
TATTCAATTCCGTTTAGCCAAATTATCTTTCGTAAGTATAACTTCTTTGTAAATAAACCA
CATAAATTTTTTAATCTGGAGAGGTATGATATTGTTGCTCTTACAACACCTACAACACTG
ATCGCATCCGACCTCAGACTTTGAAAAAGGAAATAAAGTTGAGAATGAGATACGGAGCAA
ATATTCATTCCGCTTCTTTTTCGCCGGTAGCCATTTCGTTTTCACCACTAGCTGGACCAC
AAAGCGACCCGGTCGAACACCATCGAACTGGTCGAACCGGAACTAATCAGTTCCCTCATC
CCTGACCGGCCCGCAGTCCCCACCACGCACCAGCCCTGAAGGCCCGAACCACCTCCGGCC
CCGGAGCCCGGCGGACGGCGGACATCGCCGACGTGCTCTGCTCCCACCGGTTGCTCCCTC
TCCAACCCTCCCCTCCCATCCCCCATTAGCGTGCGCCATCCTCCTCCCGCACGACCAGGG
AGGCCGCCGCCTCTAACCTCCTCCCGCAGGCCGCAGGGTTGGGGTCCGCCCCTTGCTTCT
CCCCCGAGTCAACTCTCCCTCGCCTAGAGTATGAAACAGTTTCTCCAGCCTGAGGTATGT
AATCCAAATTCTTCGGTTCCTCAGTTGATGGATAAATGGCTTGGATTTGTGACTGTTCCT
ACATTGATAGGTATGGATAATGACTTGGATTTGTGACTGTTGATGATAATGTGTATGTAT
ACCCTCATACTGTTCACAACATTTCTGCGTTGAGCCATGAACTGTCAAGAGCTGCTAGTC
TATTTTTGTTGTAAACCTACCTTCTGTTCTATCGAACCTGAAACCAACATCTCATGTATC
GACGGTAGACGGCGAAGCTTAAGTTACTGTTACCACTTACATTCTTCTACTCCCTCTGTC
CCATAATATAAGAGCGTTTTTTATACTAGTGTAGCGTCAAAAACGCTCTTACATTATGGG
ACATTAGGAGTATATTTTTACTGTTCTTTGCAATTCATTGCATGTTTTCTGCATTTTCCA
AAATGCGCTGTAGATGGACAAGGAGAGGTCCAGGAGAAGAAGGCTGATGCTTATAAAGGC
CGCCGCGTCCGTGGCTTCATGTATGGTCATTTTGTATGTCCGACCGAGACTGCAGAGAAA
GCGAAAGAGTATTTCCTATGGCCCAATCGAGGCAAGGGACAAAAAAAGGATTGCCTTTCT
AAATAACCAGATTTACAAGGATGATATAACTTGTCTGACAACGCTGAGGCTTATGAGGGC
TTCTTTCTTCGGGTTGTGCCAAGTTTTGAGGGAACGCTCTTTGCTCCGTGATACTGTTCA
TATATGTGTTGAGGAGCAAGTCGCCATGTTCTTGATCACAGTAGGACACAACCTTCGGAA
TAGGGTTGTAGCTGCTATTTTTAATAGGTCAGGTGAACCGGTTAGTCGCTATTTTGGACT
AGTCCTCCATGCTATAGTTCAGCTAAGGGATGAGTTTATCAGGCCACCATCATTGGAGAC
CCCAACCAGAATTGCTGGTGACCCAAGATGGGACCCATACTTCAAGGTATGACCATCCAT
AGCTATATTATTTTTTTAGCGAATAAACTGTCTAACTAAATTTTCTGGGCGGTTCTGATC
ATATAGGATTGTATTGGAGCCATTGATGCTACACAGATACAGGCTTCTTCTTGTAAGAAC
GTGGAGACTGCCTTCCGTGCTAAGAAGTCATTTGCAAGCCAAAGTGTGATGGCAGCAATT
GATTTTGACCTTCGTTTCACACATGTGCTGGCTCGTTGGGAGGGATCTGCGCATGATGAT
GATGTTTTGGTGGATGCGATAGAGTGTGAGAATGGCCTATGTGTTCCTCAAGGTAATAAA
TTCGTTCTGACATGATATATCCACATAGAGTTAATACTACTTATTACACAATACTACCTT
AGCTGCTCATATGTATTCCTACATGTAGGTAAGTTCTACCTAGTGGATGCCGGATATGGA
GCCAAACCTGGATTTTTGCCACCTTTCCACGGCATGAGACATCACTTGACCGAGTGGGGG
AATGATCACGTGCAAGATGCAAGGGAATTGTTCAATCTTAGGCACTCATCTCTACGAGTA
CCCGTGGAACGTGCATTCTCATCACTCAAGCGAAGATTTAAAGTTCTTGATGATGCAAAT
CCATTCTTTCCCTCTGCTACTCAAGTGGATGTTGTGATAGCTTGTGTTATCCTCCACAAC
TGGATTCTTTCCCAAGGCACTGATTGTTTCATTATACCGGAGATTAATTGGAAACCTAAA
CCGCCTAGTTCTCAGAGAGAGCAAACCCATGACCATAGGCACATGGTTGAGTTCAGACAA
GCCCTTGCTGACAAAATGTGGGAAGACCATCAAAACTATCACAGCAATGATGCTGACTTC
TTGAACACACCAAGTTACAATCACGAGATGGCCACAATCTTCAGTGATGGTATGGCTTCT
GATGTATATGCTAAGAGTGTGGATGAACTTCTTGCTGCAGATGCGACAGAGAATGAAATT
GCCAATGGAGGAAATGACACTTTTGCTGCTAGTGTTGAAGAGTTTACACTGCCTTTTCCA
ATCCCCGAATGGGGGAAGAATGGTGATTCCTCTAGCAGTAAAGCATCGAAAAGGGCCAAG
GTAAACAATGACGATGAGTTGATGCATTTGATGACCAGCCTTGATAACCTTGCCAAAGCT
ATAGAGAAATCTGAATGCGTAGATACAGATGTCCCTGAAGATCTTCAGGGTAACTTGATG
GATCTCCCTGGATTTGAAGAGGCACATCTTACCCATTACTATGCTCATCTAGTTGAGAAT
CCTGCAGTTGCTAGAGCATTCAACAAACTTAGCATGTCCAACAAAATGACATGGGTAGCT
AGATATATCAACAACCACCTTTCTGAGTATAACCTACTTTATATTTGAACTATGTGGTAA
CACTGCTTTATGTTCCCAATAGAGACAACCAGTATTGTGGTATGGCCGTGCTGTGTCCAT
GCGTGTTCTGTAACACGCTATGCTATCTCTATGTTTGTTGTGCTACAAGCCTACAAAGGG
ACTAGGGCTGAGGCAGACCTTGTAAATATTTCATTCGCATGCTAGTCAGACTCCCGGTAG
GACCTGGTGCTCGTTGCAAATTATTTTGTGAACAATCTTGTTGCAAATTATCCTTGATGC
ATCCTATTGGTTTATCTGAAATTCAGCACATAGGACAGATAGTGACACCGTGAACTGAAT
TTTCGGTGCATGAGTCAGATATAAATTGTCGCCAGTGTTTGTTTATGTATACGCCTGAAC
TTTCGGTGCTGATGTAAGTTGCTTCTTTGGGGTGTTCCTATGGAAGCTTTTCCAAGACCT
GGCGAACCACATGCCGTAAAGCTCCTGGTTTAGTTCAGGATACCAGGGCATGAAAACTAT
CTTCGGCTGGTGCGTACACGAGGCCATATGCATCGGGAAAAACTTATCCAAAAACCACTT
GCAACTCCAACAGACCGACCCAAACGGACAACAATTTTGTCTGCTTTTCGTCTGTTTGGT
TTGTTCTTCGGCCCATCCGTATCCGTTTTTTTAAATGTGTCAGCACATGCATCCAACGAA
AAGCAAGTGGACAGCAGCAAATATGTCAGCACATGCATCCAACAAAAAACAAGTGGACAG
CAGCACTGTGGCAATATAATAATGGAAGAAAGGTGAATGGGGTGGGCCAGCGAATTAAAT
AAGCAGACAAAGATGGATGGGTGTGTGACAAGTAGGCCAGGCCGGCCACATGCGGACACA
GAGAGGGGGCGGGCGTTCGCTTCATGTCCGCGCCGATGCATTTCGAAAATTTAACTCAGA
AAAAGGTCGGTGCGGACGCAAAGCAGACGTGTTTTGAAAATGGATCCGTGCGTTGGGACA
TCATTTTTATCCATACAGATCCAAACGAACAACGGCGGGCGGAAAATCACTCCATTAAAG
TTGCTCCAATGTACAGCTGATAATAGTTCAAAACGCTATTTTTATGAAGTGCATGTACCC
GAGCAACACATCATACAAATATGGGGGCCTTTACAGGCGTAGGAACAAATCGTTGCTGCA
GAAAGACACTTTGGGGCTGCACAACCGGGTAGAATGGATAAAATTAACTTATGAGCAAAA
CAATTTCATAAAGTGAAGCTGCCTTTTGTGTGGCGACCGTGCAACGCCTTACTGATAAGC
GTGACACGTGACACCCTGAGCTCCATTCCTGGTTGTGCAGCGTCTAGCTGAAAGAAACCA
CACTACGTTGTGCAGCGCCTAGCCGAAAAGAGCCACACGATCCTATATTAAAACTATTGT
AATTTTTAATCCGTGCATCCGTGAAACACATGCCATATACGAATGTTGTGCATTTTTCTG
TGTTCTACGCAATGGTGGCATTTTTATCTATGTTAGGATCGACTTGCTTGATAGAAACTT
TGTTGCAAAAATGCATCATAATATAACTGACAGAATATGTTAAAACTTACGAACTTCGCA
TGATAATAGCAATTGACTTATAGTTCTTATGCATTTGCATCCTACATGAGTTTTGCTCTA
CATAATGTGTACTTTCACGCCATGCATATGCTTGCCATGTTAATCATCTTTAACATGTTC
ATTTCTTGCATCTAAGTGACTAACATGATATAAATAAACTTTTGTTACAGAAATTTGCAT
TTTGTAAGATCCATAGTGATTAATTCTGGCATCATATGAATATGATCTAATTATGGAAGT
TAGAAAATCTTATGTCTACTTTAAGGCCCTGTTTGTTTCATAAGTCCTAGGACTTTTTT
