Map Locations of contig_1566033 (9274 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1566033

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13595 1 574 bp MLOC_13595.1 Available Available None
MLOC_13594 1 1302 bp AK374871 Available Available None





CDS Structure of MLOC_13595






CDS Structure of MLOC_13594






Contig Sequence (9274 bp)

>contig_1566033 9274 assembly3_WGSMorex_rbca.fasta
AGAGTCGCATCTTGGGCGTGACAGATGAGGCCCCAGTCCTCGGGTCCAGACATATCGGAG
ACGAATCCAGCGCCCCGCCATGAAGGAGTACGTCGGAGCTCGCGAGAGAGGAGCTTGGCT
ACCTTGGAGGGGGGTGTGGAGTGGAGTGGAGTGCGACTAGAGTTTCGTCCGAAGTAGAGA
GGATAATTAAGGTAAAATATATATGGGATCAGGTGGACCACAATGGGTTGGATCCGATTT
GGCGTGCACGTCTAAGCGTCCACATACTCGCCGAACTTATGGGTTGGATATGGGAAGCGC
CGGTCGGTGTTTGAGTCGGATTTGCCACTTGTGGTTGAGTGGCAACTTTGTGTTCGAAAA
ATGACCGGGCATGCCACCGGGGCGTTTACAACATTTCGCTTGTAGATGCTCTTTTAGGTT
ATCTCTTCTGTTCGTTTTTGTTGTGTACTTTCAAACGTTCAAATAAATATATTTTTAAAT
ACACGCAATAAAAGACTACTGTTTTTGATAACAAAATAATATGAGTCGCGATATTCATGG
CATAATAGGCACCCGACCACATGATTGTGTGAGAAAACATTAAAACTGCCCACATGTCCA
GACGCTGCTACTTTGTGCCACACATCGAACCAACAATAACTATCCGTCCCACCATACACG
TGTGGCACGAAGCAATTCCACACTCATGTTTTTTATGGCAAGTTTAGTTATCCGATAATG
ACAACTTTAGTTGTAAAGCATGACAACTTCTCTAGTTTGGGTGACAAGTTTTTTTTTGAA
TTTCATTTTTTTGGATAGCAATTTTAGTTGTAAAAACATCAGAACAATGTTACTTCGTGC
CATGTGCGTGGCATCATTTTGATTAACTATAGTTGTCATGTCTAATTAATAATAGTTGCG
AGGTGCATCAAACCATGGTTGTCATACATGATCAATCATAGTTGCCATATGTGATTAACT
AGTTGCCATGTGTGGTCGAATCATAATTTCCATGTGTGATTAAGTAGTTGTCATGCGTGG
TAGAATCATAGTTGCCATGAATGGTCAACCATACTTGCCATGTGTGATTAACTAGCTGCC
ATATATGCACAACTATAATTGTCATCTATCACCGTAGGAGCATCGTGTGGGCGAAGTCAA
ATTCACCCACACGACGATGTGAGCAGTCGTGTGCTAATGAACTGAATGATGTCCATGCGG
GCGAGGACCGGTTCACCCACACAAGCAAAGCTGACAACCACTCGTTACGGGTCGTGCAAG
GCCGTTTGGGCGAGCGCTCTAATCCCACACAGCATATTATGCCTACATGGCACTGGAATT
TGAACAAACCCCTGCAACATTCATGCAATTCAAAACCAACTATGATTAAAACGTGTTGAC
CAAGTGTTGAAATGCCGTGGGCGTTATCATTCGGGAAAGTAAACAGGGAAGCAGGATCGC
ATGCTTGCTTTAGAAATATTTTGTACGGTTGCACTGCAAAATATGAATGGACTTGCAAAA
CATCAAAAGGATCTTGCAAACAAAAAGAAATATAATAAATACACATGCCCCCTATGTTCC
TCGATTCCATTGACAACTGAATAATCATGTCCTTCCCCGGAAAAAAGAAAGAATAATCAT
GCTCTCGATTCTGTAGTACTCCTGCTAGCTGACTGTATTACTTTTGCTACAGCGCTGCAG
CTCGTGACTTGCGACACCCCCCTTTCCTTTCCTCTCGTCTCCTTTCCTTTCCTTTGCTGT
TCCGACCGCCGTCGCGTTCCACTCCGTGAAACTTCGTCGCTGGTAATAATGCGAGACTGT
TTACGCTCTGAATGAGGGCCTGAGCCAATGCACAGTCCACCCCTTTCAGCATGCTTGCCT
CGTTCTGAATTCCGATACACATGATCCTCCCTGCTGTGCATGCACCACAGCTGGCGTTCC
TCGTCTGCTCTCAAACAAAGTTTGGCGTCAGTTTGATACATATCCACGTGTCGTGTTTCT
GGACTGCTGGAGGCAGGGGCCTCCTCCTAATTCCATCGACAACTCGTCAGGCTAGCAGCA
TGTATATGAAAAAAGCTCGAGCCCGATCGACCTACACCGCTACACGTCGGATGGCCGAGG
TCTGAACCTCACGCGACACGCCATGACGCTATTTGAAGCCCGGCCGAGTCTGGATCTCTG
GTTCAGCACTGAAGCGCGACGCACAATCACTCCAGGGGTGCAGTTCAGACCGGCAATTAC
TTAGCAGCATACCTACTCCAGCCAGGAATGGTACGTACGTGCAGGTCCGCAGCTGGGTAG
CTCCCCAGCTACTACGTGCTCCAAAACCGTGCATCAATGTCGACCGGCATGGGCCGTTCC
GTTTCAGACGGCCGGCGTAGAAAACTAGAAACGGACGGAATGATTCGTTGCCCGCGACGC
CCATGGCTCCATGTCCATGTCCGGGTACGTAGCGTACGTACGTGCGTGCGCGCGCGCGCA
CATGGCGCCTGCACGCCGTGAAGGTGAGGCCGCGATCGGTCATCTCAGCCTCTGCTTTTC
CGGTCAACTTTCACCCAGCACGGAGGGCCCGTCAGGTATCTTTTGTCACATCACCTGGGA
CTCGCCATGCATGCGTGCATGCATGCATGGCCATGATACATTGATACTTTCCCGCCGGTG
ACGGGCCGCCTGCCTGCGTCTGCATGCCTGCTTGCCCCTCCACGGCATGCACACACACGA
GCTCGACCTCGAGCTCTCCTTGTCGAGATTCGTCTGATCTCCGGTCGAGGGGATATATCG
GTGCAGCGATTTTCAATGCACGCATGACCCACTGATCGATCGATCGATCGCCGCACTGTG
CGTCTTCCCTGTAGAGATTGGCCGGGTAGTGGGGCTGGGTGATCTGTCCTTGGAAAACTC
GGCCACCTTTTCTTCCTCTCCTCCGGTTTGAATGCATGCTTTGTTCCGAAACGAACAGAA
ATTCGCTACAGTTGCCACAGATGCTCCTATCTCCCGTGCGCACGTACGGTCCTATTCCCA
CACCACATGTGCACGCACTTACCCTCCGTGTCCATGTCTACTACGTACGTATGCGTAACT
ACGTACGTACGCCCCCGCAAAAAATAATACGTACGTACGTATCGTAGACGTAGAGTACGT
AGCTACAGCTTGTCTCCTCGTTGTGGCAACATGCATGAATGCATGCATGCATGGAGCTAG
CGATGACCAATCATATGATGCTTCGTTCGGGTGGTGACCTCACGGCTGCATGCAAAGTAC
CGTACTGTGATGCTACTAGTACAAGAACTCGTCGACCGGCAGCACGTACTGCTGCACCTG
CTCGACCGACGAATACAGTCGGCCAACCCCATGGGCTACCAGGGGATGAATGAGCTCCAG
TTGCGTGGAGCCGGCCGCCGACCGATACGTCTACAGACGTAGTACTAGAGAGGAGCGCAG
GCTCCACCAGAGAAGGAAGGAATCCTCACCTCAATAATTCAGAGAGGCGTCCTGCCCTGC
ATGCGCCGCGTCGATCACATGCATGGCTACGAAAGCTTGCCTTTCCCTGTGCATATGGCC
GCGCGTTGTGATCGATCGGTCGATCCCACATGCATGCATGCATGCATTCACAAGCAAACA
ATGCGTGCGTGCGTGCGTGCGTGCGTGTGATCGATAGACGTCCAATTATATTAGCTCGTA
CAGTACTAAGCCGGACACTGTTCGGGATTGATCTCTGTAGTCTGCAGTTTCACCACTGTG
CCGGACAGCAGGGTTTGCACAGCTCGTGTTGCTGTAGCCAGTCAAGAGCGAGGTCACCAT
GCAAGGCTGCAATTAATAGGCCATGCGATGCGAAACTCGTCTGTCCAGTGTCCAGCCTCA
CCGTCTAAGATGTGTGTAGACGTGTAGTGTGCCGGCCGTGCTTGCTTGCTTGTGATACAT
CAATGGAGGTCAGTGTGAATATATTTTACGGGCCATTTCTTTCAGCAGATCGATCGATCG
ATCACATCCGGTCCCAATGGAATCGAGCGAAAGGTTGGTGGTGGCAACAGTGGATTTCCC
CGGCAAAAGCCCGCACGCACGCACGCTGTGCTTCTCCTGGCTGCTTCTGTAGGCTGCACG
GGCAGGGGCAGCCAGGCCCCAGTCCCGTCACCTCGGGTCAGTCAGTGAGATGCCCCCACC
GCTCTCACTCCCATAGCGGCATCACCATGGACGGACGAGACGACGTCAAAAAGCGAACAC
CCCCCTGCCCGGGCCGCAGACGCAGCCAGCCAGCCAGCACCCGCACGCGCAGCGCGATGC
CAGCCTACGTCGTGCCCCTCCTCCTCCTCCTGTGCTCCCTCGTCTCCCTGGCCGGCGCCG
CCATGGACCCGGCCGAGCGGGAGGCGCTGCTGCGCGTCATGGAGCTCGTCTCCTCCGACC
GCGACTGGCGCTCCTCCTCCGTCCCCGACCCCTGCGCCGCGCCGTGGCCGGGGCTCGAGT
GCAAGCCCGACGCCGACGACAAGCGGCTGATGCGCGTCACGCGGCTCGACTTCGGCGTGC
CGCCCAACCCGGCCTGCAGGGAGGCGGCGGCGTTCCCGACCCACGCCTTCTCCGCGCTGC
CCCACCTCCAGTCGCTCTTCCTCGTCGACTGCTTCAAGAACCCGGCCAAGACCGCCGCGC
TCGCCCTCCCGCCCGCCGCCAACCTCTCCGCGTCCCGCCTGCAGCAGCTCAGCATCCGCT
CCAACCCCTCGCTGTCCGGCACGCTGCCGCCGCAGCTCGCCAGCCTGCGGTCCCTCCAGG
TGCTCACCGTCTCCCAGAACGCGCTGGTCCACGGCGAGGTCCCGCGGGGCATCGGCGGCC
TCGCCGGCCTCGTCCACCTCGACCTCAGCTACAACTCGCTAACGGGCCCGATCCCGGCGC
GGATCGGCGAGCTCCGGAGCCTCCAAGGCCTCGACCTCAGCTACAACTCCTTCTCGGGCC
CCATCCCGAGCAAGCTCGGCCAGCTCGCGCAGCTGCAGAAGCTGGACCTGAGCTCAAACA
ACCTCACCGGCGGCGTCCCGGCCACCTTCTCCGGCCTCAAGTCGCTCACCTTCCTGGCCC
TCAGCAACAACGGCTTAAGCGGACGCCTGCCCGCGGGCCTCGCCGGCCTCCGGGACCTGC
AGTACCTGATCATGGAGAACAACCCGATGGGCGTGCCCCTGCCGCCCGAGCTCGGCGGCA
TCGCGCGGCTGCAGGAGCTGCGGCTGGCCAACTCGGGCTACTCGGGGTCCATCCCGGACA
CGTTCGGGCGGCTGACGAGCCTGACGACGCTGTCGCTCCAGAACAACAACCTCACCGGTA
GAATCCCGGCGGGGCTGAGCCGGCTGAAGCGCATGTACCACCTGAACCTGAGCAAGAACG
GGCTGGACGGCGCCGTGCCATTCGACGGCGCGTTCCTGAGGCGGCTCGGCCGGAACCTCG
ACCTCAGCGGCAACCCCGGGCTGTGCGTGGACGATCGGGCCGTCGTGAAGGAGGTGGGCG
TGGACGTCTGCGGCGGCGGCGACAGCTCCGTCGGCAGAGCGATCACGAGGGGCGGCGCCA
TGTGGCCTGCCCTGCTCAGGCCATCCGCCTCCGCGCTGCTCTGCTGCTGCCTCTTGCTCT
GAGACTTTCATGACTGATGTAGTAGTTGCACTGATTAATCGCTCGCTCCGTGTATGTAAT
TGTGCTGCTTGCTTTGTAACGTCGATTTGTGCAAGAATTCCGAGTGGAGCTGCAGTGGCA
GGGCACAGTGGCGCGCATGGGGTTTTGTCTCGTCGCTTGTTAGGCTTGGGCCACGGCGGT
CAACGAAAGCGCCGGGGACTGGAGTGCTAATCATGATGTCTTCCCTCCCGCCTTGCTTCA
GATTCTGCCTGCTTCCTTTGTTGCGTCGTGGTGCCGATTGAGCTGGTCATGGGCAGCATT
TTGCATCAGTTTTCAGCCGCTGATCTGTTGTCTCCATAGCATTGTACTCGTCATGGCTTT
GTGGGTGCATCAAAGTTTTTAAAAGCGGACTAGTATACTGTATCATTTAAGGGAAACACT
ATCATTTAACCGGCTGATGCACACGTGAGCGTCCGTCGCTTGCATAACCGGCTGGTCAAT
TCTCATCAAGCATTCACGTTTGGCACAAATCAATCTGCAACACATGACTAGTTTCGAGAA
AAAAAATGATTCGGTTATCTTTTGTTTCTCTAAGAGAAAAAATGGTTTGAAGGTGATTTT
TTTTTTTTTGTAACAGGGATCTTGTGTCAGAAACACAGTCCGAGTTACAACATCGGACAA
CATCGGAAGAGCGCCCGAGACTAGCATGAGAAGTTTTTGCAACAAGACAAGACCTATGTT
GCGGAAGATTCCGCAACACCAGCTTTGTTGCGGTTGTGGAAGACATCGCACGTCCGTACG
ATGATGCTTTGTTGCGGTTGTGGAAGACATCGCACGTCCGTACGATGATGCTTTGTTGCG
GTTGTGGAAGACATCGCACGTCCGTACGATGATGCTTTGTTGCGGTTGGAAGACATCGCA
CGTCCGTACGATGATGCTTTGTTGCGGTTGTGGAAGACATCGCACGTCCGTACGATGATG
CTATATCCGACAACACGTAACCGGGTCAATCTTTTAAAAAGATCATCCGGCGGACATGTA
GCACTGCCCGTCATTTAAAGGCGGATCAACATACATTTACAAAAAATATATAAAGTCAGG
GCTTATGATCATGAAAAAATAATAATGATATAATCAGGTGTATATGTCCCATGTATATGT
CATAGATATTTCGGTCACATACATATCAGCTAGCAAAAACAACCACATGTTATGTGATAT
CACTTGTAGGGAACATAGTTTTTGACCCATGTATGTCGCAATATAACACCGAGCCGAAGC
AATAATCAGAACATAACTTTCACAAAATTAGAGGATGCACAAACACATACCATCCAACTT
GTTAGACTTAGAGATAGGAAACTTGAATTGTAATCTCAACTATCTCTCCCGTATCTATCT
CTACCTAGAACAACTTGTAACAACCAGAATCCTAGAGGTTAGTTGCAACCTTGTATGCCA
CGGTATAGGTTGTTTCTGCCCATCATCAATAAATACCGACGCGGTTCCCTCACGAGGGAG
TAGGAACGCTTAAACCTGATATGGTATTAGAGCCAATTCTCTTCCAATCTAGCTATGAAA
ATCCATCTCCATCGCCATGCCTTATTCCTCGACACCAGTCTTCCTCAACCTATGATCTCC
ACCGACCGAGAAGCTCACCAAGGGGAACTACCACTTGTGGAAAGACCATGTTATGCCCGA
CCTGCGAGGAGCGCAGGTCACGGGGCTCCTGGATGGAACCGAAGTCGCGCCCTCTACCAT
GGTGCAGCAGCGGCAAGCACACAAGTCCATGGCAGTGGTGCCAAATCCACCGTACGTGTT
ATGGCTATCGAGGGATCAACAACTTCTCAGCTTCCTCCTGAACTCCCTCTCCAAAGAAGT
TCTTGCCCAATTCGTTGGTAAGCAACATACTCATGAATTACGGTCCGTCATCACCACCTT
GTTTACCTCGCAATCTCAATCCAAGATCACTAACCTAAGAATTGCCATCGCCACAACCAA
GAAGGGAAGCATGCCCAGCACCTCCTACATCTCCAAGATTGGGACTACGATCCGGTTGTG
GCATCCATCGGCGTTGTCAAATCCTCCGTCACAGTCGTCGGGCTATTAGCTCACATCGCC
GCCTTCGACCAACGCTTGGAGATGCTCGGTGATGGCGGGGAAGGTGGCTTCCACACCTTC
GTCAATCTGGCATACCGTGGCTGCGACCACTATCGTTGTGGTGGCCGCGCACGCGGCAAC
AAAGGCCATGGCCGCGGGAGGCGGTCTCCTTCTGCACCAACCAGCGGCAACACGGGATCT
CGAGGGGGACGTCTTAAGCAACATCAGCAACAACATCCACCGCGAGACTACCCCGAGTGC
CAAATCTGTCTCAAGCATCATCACAGAGGCGCCCGTGATTGTCGGGACTCCCACGAAGAG
GATGAGTACGAGGAGAAGGAGGCAAATGCTTTCACCGACTCCTACGACATCGACACAAAC
TAGTACGCGGGCACTAGAGCCACACGTCACATCACGGGGTTGCTTGACAAGCTGACAATC
AGAGACAAGTACTGTGGGAGTGACCTAGTGTGTACACTACAAGTGGATCTGGTATGAACA
TTAGTCATTGTTGGTAGCTCAATCGTTAAAACCCCTATGAAAAACTTACATCTAAGTAAA
GTCCTATATGTGCCTGAAACGCCAAAGAATTTACTTTTTGTTCATAGATTTACTCTTGAC
AATCGTGTTCTCATTTAATTCTATCGTTATTTCTTTTTTGTTAAGTACTTGGACATGAGG
AGAATCCTTCTTAGGGGAAATGTGTGGGTGGTCTCTACCCACTCATATCTTCACCATCAT
CATCGAATTAACAAGCCTTTGTCAGTGTCAAGCCTTCTTCAGCAAAGTGCCATAGCAGAT
TAGGTCATCCCTCATCAGTCATAGTTAAGCTCGTTCTTAGCAAAATTAATCTTCCTCATA
GAAATGAGTCTAGCATTGAGTGTGTGTGTGATCCATGTGAGCAAGCTAAAAGTCATCATC
TGCCATACCCTACATCTACCAACATCTCTACTATACCCTTACAACTTGTATTTTCAAATG
TTTTGGGGCCAAATCCTAGTTCTATTGGTATACACTCATATTATGTAAGCTTCATTGATT
AATATAGCAAATTTACTTGGATCTATCTTCTCAAGAAACGATCTGAAGTGTTTCAAGTTT
TCAAGAATTTTCAAAATATTTTTGAACGAAAACTTAAAACTAAGATTATTGCCATGCAAA
CTCACACGGCATGTGAATATCGGAAACTTAACCTCTTCTTTCAAAAACTTGGTGTTTCAT
ATCATGTTGCGTGCCCGGTGCCCCCATGCGCATCAACAGAATAGTTGTGCCGAAAGAAAA
CATTGCCATGTTGTTGAAGTAGGGTTAGCCCTACTAGCAAATGCATCAATGCCACTCAAA
TTCTTGGATGAAGCATTCTTGACACCTACATATGTCATAAATTTACTTTCTAACAAAGTC
AAAATTTGAGACTCATATCACACGACTTTTTGGCATTACTCCCGACTATAACTCCCTTCG
TATTTTCGGTTGTTCTTGGTGGCTAAACCTTCGTCCATACAACACACACAAACTTGCCTT
TAGCATGATGATTTCAATGATGCTCAGATAAAAAGTAGTAATTGAAACATGCAAGAGAGC
ATCATGAATAACATGGCAAGCACATTTAAGTCTA