morexGenes - Barley RNA-seq Database

Contig contig_1566027
Source Contig contig_1566027
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1566027 (9715 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1566027

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13593	2	1942 bp	MLOC_13593.1	Available	Available	LOC_Os03g55560.2, FRAME:-2, EVALUE:0.0, 13103.m06044 protein STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
MLOC_13592	1	157 bp	AK375784	Not available	Available	None
CDS Structure of MLOC_13593

CDS Structure of MLOC_13592

Contig Sequence (9715 bp)

>contig_1566027 9715 assembly3_WGSMorex_rbca.fasta
CAGTCACCAAGCGATAACTCTGACGATGTTCAACAACAATACACAAAAGGACAGGCCCAG
TGCATAGAAGCTCCCACACAAGGTGGGGTCTGGGGAGGGATTATAGGAACCTAGTCTTAC
CCCTGCTACAGTGCAATGCAGAGAGGCTGGTTCGAACCCAGGACCTCTTGGCACAAGTGG
GGAGTACTTCACCACTGCGCCAGGCCTGCCCTCTTACAGCAAAATATCTATATGATGTGA
AAATATATCAATGATGAATCTAATCGTATTGATTTGGTATTGTACAGTATATGTTAATAT
TTTTCTCTATAAACTTGGTCAAAGTTTGTAAAGTTTGACTTCAGAAAAAGCTAATATGCG
GAGTAAATAGAAAACGGAGGGAGTACATCATTTCTCCATTCGCAATTTTATTTAGGCCAA
TGTGCCTATGTGTGGCAATTATCATCATTCATATACAAAACTAACTAATGAGAAGCGAGC
TACCCTAATTACATAAATCCAACTCATACAACACATCCTGATTTTACAAAACGGAGAAAG
GTTTGAATTATTTACCCCTTCAAGACCACTCCAAGGAGGCTTGCCGGTGAACATCTCAAT
AATTGTGCAACCAAGGCTCCAGATATCAACGGCAAGATCATAGCCTACATCCTTCACAAG
TGTAGCCTGGACAACCTGGGATACAAATGCGCACGTGTGACTGCCATATAGCAATGACCA
ATGAGATGCAGCTTACAGCTCTATGAAACAAACCAAAAGGCAAAACCAAAGAATTTGTAA
ATCTAAATGCCGACTTAGCAGTATGCCCAATGATGTGATTCTACAGTAAAATGTCCATTC
AAACTAAATGGTTTCATATCAAGCAAGATTGCAAATCAAGAATGGTACCAGGTTTAGAAG
AAAAGAAGTCCACTTTGCAATTTTGAACTACTGTAAAAGACACAGGTTCACATTTAACTT
TGAACTTGCAAACTGCTTATTTCAACCGTAAAATGTGAAATCGGTGTTTTTTTACCCCTT
TACGGTAGTTCGGGTTCAAGACTGGAAATAGACCATTTACGAATTTAAGGTTGAAACGTG
AACTTCTGTAGTTTAAGGATGTTAAGTGGATGTTCTTTCTTAATTTCAAGACATGTAAAG
TTAGTAAAGGTCATCACAAAATCTAATCTATGTGGGATGATGAGCATCCCTTGAGCATAT
ATATGTTCACATGTTTAGGTTATCAGCGTGATTTTATGGAAATTATAATACCTTAGGCAG
GCTGAATGTTCAAGAAATCAGCTCTCTTAGGTGCTGTAGCAAACACATTGAATGAAAATA
AAGTTCCATTAAATGCATGAATCGCTTTTGAGAATTTGGAACATCTGCTTTTCTTGCCTG
AGCGCCATGTCCACAAGAAGACTACATGAAATGGATGTAAGCATTTTTGGTCACAGTTTC
TCTTCTTGAGAAGTCATTATTTTACATTGCGCAAATGCAGTTCAAACCTTAAATGTTAAA
ATTATTGGCATGGCTACACAGGATAGGTATCAACCACTTGGTCAAACCTAATCAGAGAAC
CAAACTCACACCATATCGAGTGCTTTACTCCGAAAATCACCCACCTGCATGTATTAACAG
TTGAGATCTTGCCATGGCCTCAATGCAGGCCCAGGGGAATATGCTGTAAATACCTTGCTG
GCATTGTCAGTGTGACGTCCACCTCTAGCAGTCTAGACTCAAGAGTTAAGACCTTATCAA
GGTGTTTTCACATGCCATCAACGCAGCACAGGCTATAACCATGTTGGTCTTCCTCATGCG
CAATGAGACGATGACTGTACTGAAGCATCATTCCTTTAGGAGTCAAGCTTCACGGTTCAG
TAACAATTCAGTTTCAGCAGCAAGCTTCCGACAAGTTTCATGTATCAACAAACTCAGGTT
TCAGGTTTCACAAAAACCGAGCGCTAGCTCGGTGGCTAGAGTTTATGGTGGTAAACTCGC
CAACCCGCGTTCGAACCCGTGGAGTGCTATCTGCGTGAAATCTGCAGGAAGGTCTCATTT
TCTATCTAACAACATACAGTTAAGGGAGGGACCCATTCCCTTTTAACCACGTTTTTGGTT
TCAGGTTTTGCTACTGTGTTACAAGAATGTTTCAGGCTTCAGAACAAAGTTCTAACACAT
GGTTTCAAAACTTACAACAGGGTAGCAAGTCTCATGTGGATTTCAGCAAGTCTCAGATCC
CTGGAATTGAGCTATCATGTAGTTTTCAGTTTCAGGAGGTTTTGAGCTAGTTTCAGTTAA
TTACTCACAAGGAAACAGTACGGTAGGCCCCTGCGGTTAAATTTCTCTTAAGAGAAAGTA
TTTACAGCCTATTTACAGCGGTGAAGCTGCATATCGACCGCGGTGACCTCAAGATTGAGG
GAGTGTGAGAAGAGAAGCAAAAAGCATACATCATAACAGAAGCTCCATTAAGAGTGACTA
TCTACAGTCATGGTGGTTCCAAATCTTTTCACGAACATGCAGGAGAGCTGCACGTGAATA
TAAGCAAGAAAGAGTTTACAATGACCCAATATATGAAAATGACCTCCCTTATACAGAACC
TAGAGAGAGAAAACTACAGAGACAAAAAAAAAACCTCCTCACTGAACAGATGATTTAATC
CATCAGACTCTTAGCCAGCTCCGACAGCCATCAACAACCTGTACTTATCCTTGATATTGC
CGTATGTGTTGAAGATTGTGGAACTCATGATTGAAGATCCACCATTGAGTTCCTTCTGAA
TCCTCCTGGTGGTGCCCAAGTCTGACTCAGAAGAGGCAGTAGCGATTGCGATCCAGCATC
AAAGGGAAGTGTGAAGGAGACACAGGTAAAGGTGGATGGAGGAGTGTGATGCCGTCACCA
TCGTCCTTTATTTCTTGGAAACAACATCACGACATCCAACACGAGGTATGGAGTAGGCGT
GTCAATCCTACATGGCAAAGGAAAGGCAGCAAGGATGCTGGAACCGAACCAAGTGCTGCA
TTGCCATTGACTTCGGAATTGTTGGTAGCCACTAGTTTTGGGAGTGGGATGAATGTATAG
GACAAGTCCCATTGTTGGGTTATAGATGGATCAAACAAAGCTTATTGAAATGCCCAGTTG
GGTGGGACTATCAAATTATCACCCACACAAAATGTGAAACTGATGGAACAATTCAAGGCC
CCCTAGATGTGTTTTTGGTATGCAAAAAGGTGATTCTAGCTCCAACTGAAGAAGCCTAAG
AGTGGAGGTAGCCCTATTTCGTCTAACAGACCCAGCTACAACCTGGAAACTTTCGAGGAG
CTCGAGCCTCACCAAAACAGGCCTAACTGCTTTATATGTGTTCCTGAGTAATACAGTGGA
CTTTACATGGTACATTGGTATCCAACAGAAACGGTGATGCAATTTACTTTAGCTGGCGTC
AACAAATTAGAACGCACAAGTATTTTCTGCACGTCAGTAAAAAACAATGCCTACTACGCT
TGAAAATCCGAAATTAACCTTACCACGATGAGGAAAAAGGAAAACGATGATTAATATAAA
GACTAACTAATTCGCACCTCAGGGGCCATCCAGTATGGTGTTCCTTTCAGTGAAAGATTT
GGAGCTGCAGTGCTCAACTGGAAAGAAGAAGAAACAGTCAAGGAAATTAATTAGAAAAGT
AGCACCATGGCAAATAAGGAAAACCTGAAAGCGCAATTCCAATAGAAAAATAAACTGTGT
AATAGTAGATTCATTACCTCTCAGGGTATGCACTAAAAATATAACTATAGAAGTAAGGAA
TACCAAAGTTAATGTCATATCAAACTAGTTCGAAATAATAACCAATAGTCCAATCCAACT
AAGATATATTGAAATGTTTTACCAAGTACTCATATCAAATGTAAAAATTATGCTTAACAG
CTTATGGCATACATAATGCTCCGGTGGTCAGAATGCGACGTAAAATTAAAGATAGGCAAA
TGTTCATCTGTGTCTAATCCTTCTCAAAGTGACTACTGAGTACTTACATGCCGACGAGAC
ATTAAAGTGACTACTGAGTACTTATGTGCAAAGTGCTGGTGCTGTCAAAAATTATAAGCC
AAGACGCAAAGTGGAACTCACATGCTTAGCCATTCCAAAGTCTGCCAATTTAACCACCCC
ATTGACATCAACAAGCAAATTTGCTCCTTTAATGTCCCTGCAAAAGTATAATAGTTTTAT
CTACATCCATCATCTATGTGTCATTTTAGCCAACCAATACTTGCTAGCAAACAATAGTGA
GATCAGAATCAGCCCTTAAGATGTGGATAGAGCTGTACAAGAAGCTCAAGAAAACAAAAT
GAACTGAATGCAGAACAAAGTTGGAAGGGCAAAATAAGACCAAGCAATCTGACAATTTGT
ATAAGGGAAAAAGAAGAGGTAATGTAAAAAACTGAACAAAGTTTAGGTTCAGAAAGTTAG
GAAACAGCCAGTGGCAAACAATTCTCAGATAAAAAACACATAATGAAAAAGAAAAATTAC
CTATGCATAATTTTTTGGCTATGTAGGAAAGCAAGACCGTTAAGGATATGGCGAGTGAAG
TTGCGGACAACTGATTCTGTCATTGCACCACAATGTTGACTAATGTACTTATTAATTGAA
CCCGGATGGACATATTCCAGGTATATGTAGAATCTATCTTCAGTCTGCAAGGTGTCCATA
TCACTGTTAATAGCAAAGTTATATAGCACTGTTATTCCCTGAGTGCGGGCAAGTAGAACT
TACAGTTTCACTGCCGTAGTACTGCACTATGTTATCATGCTTAAATTGGCTAAGGAATTT
AATTTCCTGAAACAAAGGTGATGAACAATCAGAGGAAGTGCAAAATTGCATGATCCTTAG
ATAGCATAAGAAAATAGTGGTATACGGTTATTGCCCAGCCAAGTTCCAGAAAAATGAAAC
AAGTATTACTGCAGAAATAAGCAACATCAACACAAGTATGGCCGAACCTGTTCCAATTGC
TTCAAAGACTCAACTGATTTTGCATCATCAGGAATTATGTTAACCTCTTTCATGGCACAA
AGAGCTCCGGTGTGCCTGTATGTTGGTGTGACGGTATGTTCAAAATTTAGAGAAGCGATT
ACTAGTTTACTACAATAAAAATGAAATATAACATACCTATTGGTAGCTTCATATACACAG
CCATATGTGCCACTGCCGATGAGCTTCCTTTTTTGCCACTGACCAGCCATTGAGGGCGTC
TCAACTTTTGGAACTGATGGGTGACTAAAATTTGTTTGCTTTGGGCTCATTGAAACAGGA
GGAAGAGGTAATGGGTGAAGATTGGGATTTGGATTGCCCTCAGAACGAGAAGTGTGGTTC
TCTGGGAACAAGTTTGAACGCATTGGTGATGGAGGTGCACTTGGGTATCTTGATCTAAGA
GCAGGACTTCTCAAAGGACTAGAGCGAGGAGATCGCTCCTGGCCACCCACAAATTTTTCA
GGTGAGGTGGAAGGGGGTGAAGATCCTGATTGATCTGAAGACCATGGTGATGGTGCTGAC
AATATATTGCTACCTTGGATGGATATTGCAGCAGATGATAAGTCTACATTACTCAACCTT
CGAGGACTCTGTACAGGACTTGAAAACCCGCTGCTCGGGGCACTTTTAGCAGGAATGTTC
AACCTAAAGTTCAAGGTGTCACTTGGGCTATCCTGGAACTTCTCTTTATATGTCTTTCTC
CGTTGGCCACAGGTGGCCCCATGTGTGCCAGCTGACCGTAAGTCATTGTGCTCGTGAATC
TTTTGAACAGTTTGGGGCATAAATCTATCACCAGAGACATTGACAACATCAGAAACATGG
TCAGATATGGAGTTAATCTGATCAGTGTGTCATGACATCAAAATTTTGTTTAACAATCAC
GTTCATGTTGAATCTTCTTTACTAGCAGCTTCATGGACCAAAACAAACTACACTTCACTG
ACTTTAGTACAGAAACAACCTCAGACACTCATCAGTTAAAATCACAATCTGAGCCAGCAT
TTTCTTTCATGTCAGGATCTAATAAAATCGCAAGTAGCTTAACCAATCATCATCAAGTGC
AAATGTTATGGGATATCATAGCACCCAACAGCAAACTGTCTCAACTCGTTCTGGGGGTCC
AAAAGCACAATAACTCTTCGTGACATATCATCCAAATTTTGCTAAGGTGGCATGATCTCC
TAGTCATACCATAAGCTAAATAAGTTTGCAAGTAAGCCTAAAATCGTCTTAGTGGAATGC
AACTACGCAGCAATGTGCATCTGAGGCCCTAATCCAAGCTAATTTGATATTGTCAACATG
GTTAGAAGACTATAGCAAAGGCCACCAGCCCTGATTGCTCAATCCCTGGTCGTTTTTAGT
GTTCACATAAAACTGCTCTCACCAACCTCAAAACAATCTGCCCTACAAAGTGGTCAAAAT
GCTAGTAGTGTGACAATTTTAGTGTATAGTGCCATCTGGCATGCCTTCTTATATGGCCAT
AGTGTTGGTAACCCTAAACTCATTCAGAAATCACTGCTGGTGACCTCACCCTAATCGCTT
CATCAGTAGTAAAACAGAACTAACAAGGTTACCCCGTTTAACGGACTTGAATTGAAGAGC
AAAGCAAGGAAGCTTGAAGCATCTAATAAACTGGGGTAGTAGAGAGAACAGAAAAAACGC
ATCACCACCTTGGAAACGTGGACGGCCTGTCGCCTCCAGTGTCTGCGACCCCCAGGAAGT
CAGCCGATCCGTTGCAATCCCCGTCGAACATCCTCGGGGAGGGGAGCGGCCTCCCAGGCC
CTCGGCAGGGCGAGTCATCCTGGTGGGGCAGCGGCAGAGGGTGGGGCAGCAGCATGGGCG
TGGACGACGACCTGGCCGGCGCCGCCTCCATCATGTTACTCGGCGACCTCGAGATCGGCG
TGGAGCTGGCGGTGGCGAGCCCGGACCAGACCGCGTCCCTCCTGGCGGGGTAGGAGGAGG
AGGAGGGCGGGGCGGCGTGCGGGTCGTCGAGGCGGAGCGCGGAGGCCCCGACCTCGATGT
CGTCGACATGGCGCAGGCGGCGCTGCCTGGTGAGGCGGGGCAGGTCGCCGGCGCCATCGT
GGCGGGGGATGCGGGAGGTGGAGGCGCGGGCGGGGGAGGCGGGCGTGGAGGCGGAGGCGG
AGGAAGGGCGGTGGGCGGAGCGCTTCCACCAGGGCATCGGGAAGGGGAGGGGAGGGGCTT
ATGGGGGGGCCGCGGACGAAACCCTAGTTAGTGGTGGCCACAGTGGTAATGGCGGGGTGG
GGTGGAGGGAGGAGGGGATCGGTGGTGGCTGGAGACGACGACCCCCGCCATTTGGCCTTT
GTTTTCTCCTTTCTCGAGAGGGAGGGGGGGAGGGAGGGACCGGGGGGGCAGCTGGTTTGT
TGCCCTCTCTCTCTCTCTCTATCGCTCGCTCGCTGCTATTATTATTTTTCTTTTCTTTTT
CCTCCACCCGGGTTTGGTCCGGGGCCACGCGGCTTGGGGAAGAAGTCCAGCGAGTCAATG
CCTCCGGTTACACGTCGCACACTGCACGCGGCCTCTGCCTTCCTTCCCCCGTTCCGTTGC
TTTTCCCCGCTTCTTCCCTCTGTTTACTCGCTTCCGTCTGGCCTCACGGTCTTTTCTTAT
TAGATAGAGTATAGATAAAATAATTTTCGAACGACCTTTTTTTCTTATGATGTGAATGAA
TGAATCAAGAACGCAGGCGTCTCATCACCTTGTTGACACGGCTAGATCGGGGGATGTCAA
TCGAGAGGATGCATTCACGGAGAAGTCTTCGGACGCTGGTTGGGTGACTTGACTTGGTCC
TTGGAGGCCCAAACCCACCTCCAACAAATGATGTGTAGGTAGAAAAAGGTTATATATTTG
CTTTTTGAAGATGTAAAATATGACATCTCAAAATGAAAATATACATCTTCGAATGCGCGA
GATGTAAAACGGCCACGTGCACTGTTTTTTTCCTCGCCCCATCTTCTTCCTTCCTCTACA
CCCCCTGCACTATCGCCACCACCCAACACCAGCCACCGGACGCCGCAGACCGATTGATTT
TTCGCCGCCCCGCGATTCGACCGTCGTCCGCCGCTTGATTCGTCTTCGTCGTCGTCTACG
TCATCGTTGCAGCCTTTGTCGTCATCGCAGCCACCACCGCCCCATGAATCGTCCGTCATC
GACGTTGCCAACAACCATCACACCGACGTACCGCCATCACCAAGCCACCACCCGTCGATG
CCATGCCGCCGAAGAAGACCCCGGAGAGCAAGATGGTGTTCTTCGGCGTGCGGGCAAAGT
CTTCCCACAACTTTGGGGCGGAATCCATTGACGCTGGCCGCCGCTTTTGGCTCGACATGT
ATTCCATCGTCGACAAGGGCATGACTGCCTACGACGTGGCAGTGTGGTGTGCGGGGAGCC
TGAGGTCGGACCTCAACTTCCCGAAGATTGAGACCCAGGCGGATATGGAGTTCGTCGTGT
GGGAGAGCATTCATGTTTTTTAACCGGGTTTTCCCCCTTTCCATTACTAGAACGGAAATA
CAAAGTCATACAACAACTAGGAAGAATAAGGTAGGGAAAGGAGCAAGCTCAAAGCACTGC
TAAAAAACCACCGCGATTGCTCGCCATCGAAACAGACGCTATGGGACGAAAACTTAGACA
ACACGAAGAATTATAACTAGACCTATTACAAACATAGGCAACCAATAGTACAACAAAAGT
ACAAGCGACGCAGGATCTAAATCCAACAACAAGCAGTAAAATAGAAGATTCATTGTTTAA
CGGCCTCTCGGGCGACCAACCTCGGTCCTCTCCAACCAGAGGTGACCTCAATACTCCGCA
CCGATCTTCGTTGAGTTGTTGCACACTTTCATGAGCATCATGGTCCAATTGCGAATCATC
TTGGCTCCAGCGTGAAGTCTTTCCACATCCTCGCCTTTGTGAAGCCATGCCTAGTATAAG
AGAAACGAACATGTCGTGAACACTATCTCGAAGGAGATTGGATCAATTTATTTTTTTAAG
TGCCTTTGTTCCGGGCCAGCCAGATAGCCCAGGTTACTGCTCCAAGAGCCATAATATAGA
AACGTTCATCACGAGAAAGGAAAGTAAAGCACCACGAAAAGAATTGTCAGTAATTACTCG
GACATAAATTTGCTCCAACGATCACTCCAATCGATCTCCAAACAACCCTGGCAACAGAAC
ACTTGGAAAACGGATGACGTGAAGTGTCAACCTTTCTAAAAAAGAGCGGATTGGATTCCC
ATGCCAACGATGCCTTTTCATCGCCTCTCTAGTGAGGACAGCGTCTTGGAGAGCTGCCAA
AGGAAGATTTGAATCTTCACAGGTATTTTGGCCTTTTAGATTCACTTGTAATTACATCCA
CTGAGTGGTCGTTCACGCCATTTATGCATGGACTTGGTACTGTATCGTCCAATTTTGTTC
AACCCCCAGAAACATAGTCACACTCTTGAGTGAGGGGCATGCCATTCACAGTGTCGCAAA
TGTCATCCCACTGGCTGGACAACACAGGGTCCATCCTTCTACGAAAGAAAAGAGAGCAAT
CGATCTCAGCCAACTTACTGATACGTCTCCAACGTATCTATAATTTTTTATCGTTCCATA
TTCTATTATATTATCAACTTTGGATGTTTTGTATGCATAAATATGCTATTTTATATTATT
TNNNNNNNNNNNNNNNTGACCTAGAGCCCAGTGCCAGTTTCTATTTTTTTCTTGT