morexGenes - Barley RNA-seq Database

Contig contig_1566005

Source Contig contig_1566005

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1566005 (2395 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1566005

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13587	1	1516 bp	AK373522	Available	Available	None

CDS Structure of MLOC_13587

Contig Sequence (2395 bp)

>contig_1566005 2395 assembly3_WGSMorex_rbca.fasta
GACTTGTAAACTGAGACGGAGGGAGTAGATGATATATTTGTCTGAAGTTATTACTGTGCC
TATGGTCTGTTGAAACTATCTCATGCCAGGCAACTTGTCTTTACCAGGAACTGTGGCTGA
AGGATGTGGCACTTTCTCGTTTTGCAGATACAAGAGATTGTCCGCCATCCTTGGTTCGTG
CCATGTTTTTTTTAGTAATCAAGTCCCTCAGAACATTCTCTGTGGATTAATTTGACTATC
AATGTCATCTTATGACAGGCAAACTTCTTTGCTGCTCCTAAGCGCCTCATTAGCACTTCC
AAGCAAAAACTAGGAGCCACAAGAAGAGTCCTTTTGAGCTCTCAGACGTCTTCTAGTGCC
TCCACATCCAACAGGACTTCAGGGCAGCAGAATCCAAGATTAAATTCTACCAGCCATCTC
GGGGAAGCTGTAAAGCAGCTTGCACCAACCACCCTGGGGGGCCAGGGCCATACATCAACG
GATAGGCCAGTAAATGGCTTAAGTACAACATCTGTTCCTCTGAAGCGCAATCCCGGATCC
CATCCTGTAAGAACCTTGGAATCGTGGGGCCTGACTGGGGATGTTATAGGAAAGATTGCG
TACACTGCAGTCCTGGGGTTTGCCCTATTTGGTACATTAAAACTGCTCAGATTTCAGTTC
GGGAGCACAAAACCTGTCCCCTCAACTAGAGAATCTGCAGCCACGTCTTCTCTGAATGAA
GCATCTTCGTCAGACGGTTCTCTTATCAGTAGCAGAGTTAGGGAACAGTTTGAGAAGCTG
TCAAAAATGCTTTGGTTGAACAACAGGCTCTATTTGAGAAGTGAAGGAAGTGATCTGTCT
CCTGGTTCTGGTGATGTGACTGCTATAGCTCGCAAGGAAAGGATGTCTCTTCAAGAAGCA
GAAGCGCTTGTGAAGCAGTGGCAAGATATCAAATCTGAAGCTCTTGGCCCTGACTATGAA
ATTGATATGCTCTCCGATGTCCTCGATGGTTCGATGCTGTCCAAGGTAAGTTTCTTCTAT
CAATCACGTAATTGCATATGGAGTTCATGCATGATCGTGTATGCAGTGCATAATCAAATC
AAACACCCTCTTGTTGAGCAGTGGCAGGACTTGGCTTTATCAGCAAAGGATCAGTCCTGC
TACTGGAGATTTGTCCTGTTGAATCTCTCTGTTGTTCGAGCCGAGATCCTGCTTGATGAG
GCTGGTGATGGTGAAGTGGCGGAAATCGATGCTGTGCTTGAGGAAGCTGCTGAGCTTGTT
GACGACTCTCAGCCCAAGAAGCCTAGTTATTACAGGTACTTGAGAACATGCCATTTCTGT
CTATCGCTCTTTCATTCTTCTCCAGAATAAAATGGCACTGATGGTTTGTGCTGTTATACC
TGCAGTACGTATGAAGTTCAGTACACGCTGAGGAGGCAGGACGATGGATCGTGGAAAATC
TGCGAGGCTGCTGTCCGGGACCTGTCGTGATTTCTGCCAGAAGGACGACTAACGCATCAT
CTCATAGGACACGGGGCCATGTTTAAACAAAGTTCCAACATATTAGAATTTTGTAGTTCA
CTAGCATTAGATCACCATTGAACCAAATTCGAATGCACGGAACCGTTCGATGATCTGTGT
TTGGGATGCTCTAGCTGCTCGTGGTGACTTGCATCAGGATTCGACACCGATACCCGCTGA
TTTGCTACGTTAGTACAGGATGCTAACCTCTGCTGATTTCACATACCTTTCATTTCTTTC
CGCTTGTCGGGCCTTGGGTGCCCCGCGCGGTGTAACTGAATTGTGTTAGCCATTGTTCAT
TGTTGAAAGATCAATGCAGCTTGCTTCATTTTTCTCCCCCTTGTTTTGAGTTTTTACCAT
AGGCTTCATAAATGATGATTCCTTTTTCCACCCCCTTTGTTTTTGAAGTTTGCCTTTGTT
CAGGCGCCACAGGCTTGTACTTTACTTCAGCTTTGATCCCTGTTGGATACGGTAGGAACA
TTATCATTGACCTTTTGAGTTTGGGAATCAGATTTGTAGACATTACACTTGATTTCTTCG
GTAAACACAACGTACCGTAGAAAATGTCGGTTTTGTCATGCCTAAAGATCTGACATTCGC
TGGATATCTGGGTCTCCAAGTTTTATTATATGGTTGTTTTGAGATAAAGATGGCGCGACG
TTTTCGAGCCTATTCGATAGACATTTTCTACTCCCTCCATTCCTAAATATATGTCTTTTA
AGAGATTTCATTAAAAGACTACATACAGAGTAAAATGGGTGAACCTACGAGAATGGCGTT
TTGGCTCCCGGGAGCCATGGAGGCCTTTATTTTTGAAAAATTCAAATTCAAATTTTTATG
GTTCAAAAAATTCTGAAAAAAATATGCATGTATGTAAGGATGTAACCGACATGTG