morexGenes - Barley RNA-seq Database

Contig contig_1565936

Source Contig contig_1565936

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1565936 (3913 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_1565936

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13567	2	1518 bp	MLOC_13567.1	Available	Available	LOC_Os05g03780.1, FRAME:+2, EVALUE:3e-91, 13105.m00370 protein cation efflux family protein, putative, expressed

CDS Structure of MLOC_13567

Contig Sequence (3913 bp)

>contig_1565936 3913 assembly3_WGSMorex_rbca.fasta
CTTCTGGTAATAGGATTTTTACTATTACATTAGATCTTAAAGCATTGCAATTACAGACCA
CACATAAGAGAGGGGAGATGGGTTGGAGGATAAGTGACGACATTGTTGATTTGCTATGTT
AAAATAGAGATCATGAACCTAAATAAAGGGTGTTGTATCATTCTTAGAGATGTGATGTTT
CTTGCAACGCACGGGCATTTTTGCTAGTATATATAAAAAGACTGCGTGAAATGAAAATAA
AACAGTTGCATCCTCTCTGTACATTCGCATTGCGCGGCCCTAATCGTGCTGCCGCGGTAG
GTAAGCGAGGGCCGAGGGCCGAGTCGAGTGAGGTATATTAAAACTATCGGTACACGACCA
GACCCCCACCCGCGCACGTCCATCAACATCATTCATCCCCCGCCGCCCCTCCGCGCTCGC
GGAGCTCACCGGCCGGCCGTTGGCGTCCAGAGCAGACACATCAGGTAAACCCTCGATCCT
CCTCCGGTTCCAAACATGGAGAAAGCTTTCAACCGTTTGTTTATGTTTCCTTCCCGTGTG
TCGTCGTAATTAAGCGTCCCTGGACCTCGCCTCGTCCGCCTCCGATCCGCGTAACTCTCC
GGCGGCGCGCTCGTTCGATCCGCTCTTCTACAGCTCCGGGTGCTACGTACCTCTTCCCCT
TCCCCATGCGCGCGACTCGAATCACTCGAACCGTGCGATTGCTTGAGCATGCATGGACGG
ACACTCATGATGCTTTGAGCCTCTAAACCCGTCTGCCCCTTTACGCCGCTTGCTTCCCCA
TAATTTGTGACGAGTTCGCTTGGACTTGGAAGCTTTCCGTCCGGTCTTTGTGGATCGGAG
GTCCAATCAGCTAGCATGACTTTGTACTGCTTCCTCCGTGCAATTATTCAAACTGGCAAA
GAGGAAAGGAAACACGATTATCCATTTTGCAATTCCTACACGGGTGATTTGGTTCTGCAA
CCGGAGCGGCCCTGTTCTGCTTTGGTTGGGCGTTGAATCATCTTCTCTTCATTTTCTTTT
CTGAATTTGCTAGCTGTGGCCATTTGCTTGAGTTACTCCGCCCCATGTTGTTCTCTCCCA
TTCTTTTCTAAAATCGCTATCATAAGTTTGTAGGCATTGATCTTTTTGGAAGTATCAATA
CATAGCTGAATGTTGACTTTCTCTTAGCTGATCTTTCCATAGCTGAGGTCATCAGATATA
CTACTACTATCAATTATGATGTGGTCCAGATGTGCCTTCCTTTTTTTTCTTTTTTTTTTG
AAATGTGTAACAAAATATAATCCGCTTGCGATACTAGTAGTATTTCTCAAATGGGCAACA
TATTTAAGTTTATGAATTCATGGAATGAATGTGCTTCTTCAGTTTCATCGTTCCAGTAGG
AAATGCACACAAGAAATGTTCTTACTTCTTATTGCATTAGTAAAATCTTGCACCCCCATT
GTGCTTGTGTATTGACTCGGTTGTTGCTTTTAGATGGACAACCACACTTCATCCCCGCCC
CATGAAGTAACAATGGACATCTCGTCAGCGTCCGGGAGCAAAATGTGCAGAGGTGCTTCT
TGCGACTTCGCCGACTCCACCAACACCTCCAAAGATGCAAAGGAGAGGTCCGCGTCCATG
AGGAAGCTCCTGATCGCCGTGATCCTCTGCGTTATATTCATGGCGGTCGAAGTGGTTGGA
GGCATCAAGGCAAACAGCCTTGCGATCTTGACCGATGCAGCCCATCTCCTCTCGGACGTC
GCCGCCTTCGCCATATCTCTCTTCTCCCTGTGGGCAGCTGGTTGGGAAGCGACGCCTCGA
CAGTCATACGGATTTTTCCGTATAGAGATTCTTGGGGCACTGGTTTCTATTCAGCTCATA
TGGCTCCTCGCCGGCATACTCGTCTACGAAGCTATCATGAGGCTCCTCAATGGAAGCGGG
GGCGAGGTGCAGGGATCCCTCATGTTCGCCGTATCAGCTTTTGGTCTGTTTGTCAACATC
ATAATGGCAGTGCTGCTTGGCCATGACCATGGGCATGGTGGTCATGGACACAGCCATGGA
CATTCACATGACCATGGCCATGATCATGGTAACTCGGAGCACGACCATGGAGATCATGAG
CAGGGCCACGCACATCACCATGAGCACAGCCATGGCAGTTCCGTCACCGTCACAACTCAT
CATCACCCTCATTCAACCACCGGACAACACCAGGATGATGCTGAGGAACCGTTGCTCAAG
CATGATGATGGTGCCAAGGAAGCCAAGGAGCCTCGCCGTCGTCGTAACATCAATGTGCAC
AGCGCTTACCTGCATGTGATCGGGGACTCCATCCAGAGCATCGGCGTGATGATCGGAGGG
GCTCTCATCTGGTACAAGCCCGAGTGGAAGATCATCGACCTCATATGCACCCTCATCTTC
TCCCTCATCGTGCTCTTCACCACCATCAGGATGGTTCGGAACTTGCTCGAGGTTCTCATG
GAGAGCACGCCCCGCGAGGTCGACGCCACCAGGCTCGAGGGCGGCCTCCTTCACATGGAG
GGTGTGGTTGCTCTCCACGAGCTGCACATCTGGGCTATCACGGTGGGGAAGGTGCTCTTG
GCGTGCCATGTCACCATCGAGCAGGATGCGGACGCTGATCAAATGCTTGACAACATCATT
GGGTACATCAAGGCAGAGTACAACATCGGTCATGTCACCATTCAGATCGAGCGCGAGTAA
TCCTACACTTGAATTAATGAGTGTTGGTTTTTTATTGTGCTTATTGTGTTACTGGGTGTG
GATTGGCAGAGACATCATGGTTCTTGAAATGCACTGCTGGTGGTTCAAGTTAATGTGCAA
GGTTTCCATGGCACTGGAGTTTGATTTAAGTAAATTATTATATTCAAATGACATTGGTTT
TGTATAGTTTTGGTGGCGTTTAATGTGTAGCCTTGCACCTTCTGGTATAGCTTCGAGGGG
GTGTTTGGTTCCAAGGTTCCAAGGGACTGACCTTTTTTAGTTTTAGGGACTAAACAAAAA
AGATCCTCCAGTAGAATTTTTTCTAATCTCTTAAGAAAAAGTCCCTCCTGTTTGATTACA
TAGGGACTAAAAGGGACTTTTCCTAGTCTAGTCCCTCTAACCATACATGGTCATTACTCA
CTCCTGCGGGGAGCCTTTGGTTACTGGGTCTATCCGGTGACAGATGGTAGCGTGGGATAT
CTACAACCGGTTTGAATGACAGTCCACTAATATGATAGATGGCTAGGCATCTAGGCCTAT
TTTACCGGTTATGGCACTTTTGCTTTATTATTTTATTTTGCTATTTCGAAGACTATGCAT
CACTGCAGACTATTTATGTTTTGTTTTTAATAAAGAGGCTCTATGCATCATGTTGGTGCA
CAGGCCGGAGGTATTCCTCTTTTTTTTTTTAAAAAAAAAGTTCCTGTAACCAAACAGGGC
CTGAGTAAAATTCTATATTTCTACCCCCATTTCAATGCCAACTTCGGTCCATCGAAGAAC
ACGACCTATGCATGTTATGAATGCATCCAAACAATAATCAAAATTTGCCTGCACCATGCT
TCATTACTGTCAAAGTTTGATTTAAGTCTCGGAGATGAACATGGGAGCATTTTCCAAGAA
CTTGTGCTCGTCTCTCAAAGGAAGAGTGATGTCATTCATTTCTTCTTCGATGCACTCCAA
GTGAAAGGATCGTCTCGTAAGGACTCCCTCTGTACCTAAATAATTATAGTTGGAGAGAAC
TAGGGAGTATAATCTGCTCGCACTCGACAAGCTTCTGTTTTTTCGATAAAGAGTATATAT
TAATATCGAGGATATACCAATTACACCTAGCCTCTGCAACAACGCAATGCTCTAATGGCA
TGACGGATGCACACAGTCAAAAAACAAAGAAGAAACTAAAAAAGAAAAGTCCCGCTACAG
AGTTTCAGTACTT