Map Locations of contig_1565916 (3673 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1565916

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13561 5 1477 bp MLOC_13561.1 Available Available LOC_Os01g66230.2, FRAME:-1, EVALUE:1e-46, 13101.m07171 protein csAtPR5, putative, expressed





CDS Structure of MLOC_13561






Contig Sequence (3673 bp)

>contig_1565916 3673 assembly3_WGSMorex_rbca.fasta
TCTAAATTATTTAAAATAAAAAAATAAAACGAAACTGAAAATAAATAAATAAAGGGAACT
AAAAGCAGGCGCCTGTGCATGGCCGGTCCATATGGTGTGTTGGAAATTCTCCCAGCATGC
AGAGCGTAATATAGGACGTTTTTACATGGATCGGCCCAATTCAAGATTTTTCGCTTTGTG
AAACGTTTTTAATTACTTACCGGTGACATTGTGGGTAATTTATGCAAACTTTAGAGGTAA
TTTTCAAGACGGACGATAAAAACCGTATTTGCTTTATTATTAGAGAGAGATTAAACTTGT
ACAAGAGGGTAAACTCGCCCAGACACCAGTTAAGTCCTTCTAGAACGACTTGATAAGGAA
CCAGGTTACAGTGACCTCAATCTCACATGTACCAACATGAAGTGCACATTTGAGTCTACC
GCGTTCCTGAGGTGTAAAAAATAGAGTGTCATCAAATCGTTGCCCACCAACACCATATGC
ACCGACAGAAACTTCCAGATACTCCCCGTTTCTAATTTCAGCACAAACAACATTGCGTTG
TAGCTTGATCGTGCCATCATCAGCAAGACGCAACCCATTATCACCGATCACAAGCAACCC
AATTGTCAGGTCATTTATACTGGCAGTTCTTGCAACAAAACAACCACAGAAACCATCTGG
CCATGATCCATGGACGACTCTCATACTGACTGCAGCCTCTACTGACCTACGAATCAGGCC
AAATGTCAACTCAACCGTGCTGATCTTGCCCGTGTAGACCCATTTAAAAACGGCTGAATC
AAGAGGCTGAGTATTACTGAACGGACTAGCTACGTAGATTAGATCTTGATCCTCAGATTG
CCCGATTCCTTTCACTTTGAGGTCAATTTCAAAGTACACAGGATCAATCAGCACAACAGC
ACGTGTAGGACCAGTCAGTGCTAGGTATGGAAAGTTGGAAACTGCATGGAAAATTAACCA
AGTAAATACAACCGTTCTAATACACCTTAACAGGACTAAAGTGGAATGTAACAGGTATAT
TATATTCTGAAATAAAATGTCAAGAAAATACGTGATGCATTTTTAATTACAATAACTTAA
GTTGACATCAATGGCTTGAAAAAACAAGTAACTTCTGATTTAGCAGTCCAAACAAGGTTC
AATTTTACAAGAGACACAACTGTCAAATACTCCCTCCGTCCCAATAATCTTGTCTTAGGT
TTGTTTAGAAATAAATGTAGCTAAATACTAAAACGTGACTAGATACATTCATACCTAGAC
AAATCTAAGACAAGAATTTTGGAACGGAGGGAGTAGAAAAATAAGAGCATGTCTCAAAGA
ACAAGGGATGCACTAGACTCAAAAGTGACTTGCCAAGAGAGGACTCAAGAATCAGGTAAC
CAAGTTGACATAAAGAAGAATGGAGACTATATATATACCTAGATAAAAAATTTCTAGAAC
AGAAGACATAGGCACCATAAACTTTTAGAACTTGGTAATTTCCACAAACCAAAAGTAAGT
ATTACATGTACTTCTCCAACTGAGATCATCAACTTATAGATATGGGTTTGATTCTTATTT
GGTTACCATTTTTTTTCTTTTAATTCTAGTTGGATATACTTAGGGCTAGTTTGGTTCGAG
ACCTGGCAAAAATTAGCCTTGCCTGAACCTTCCCTGAGACCTGCCTGAGAATTGTTTGGT
TGGTGCTTGGAGAGTGAAACACTAACCTGGCCTGGAGCTCCGGCTATATAGTCATTAGCC
TGACTAAAACACCAGGCACGTTCGTTAGCCTGGACCAGGCGTTCTGCACCAGTCGCCTGG
CACATGCCTGGGTTTCTAATCCAACTTTTTTCTTGTGGGCCAGCAGCTATTTATAGTCTG
GCACAGAAATAATTGATACACAGGCACAGGACATGAACCAAACACATAGCGCTCAGGCTG
GCCTGGCCAAGGCAATGATTTTCGTGTCTACAGGCTATACTCAGGCTCCATTTTCTCCCA
GGCATGAAGTCCAGGCCTCAAACCAAACTAGCTCTTAACCTCTACACCCTCTAATCTAAT
TTAACAATTTAAGTTAGAGCTAACCAAAATTCAATTTAAGTACATAGTTAATCAGCATAA
TTGCCAATTAATCTAATACCTTAACGGCTAAAATTCAGGTTTATTGTCAGTTGTACTTTG
CCTAAATTCGAAATGCAAGCTCAAAATGATTTAGGTATTTGAAATACTGATGATGGCAGG
CACATATGCTTTTCATATTATATAGCTCAGTTATGAGCTATTGTCATTATTCACTCCTCT
CTCCATTTGCCAGAGTTGTTCCTACCGTGCAATTTCCTTGCATACCTTATAAGAGGTATA
AGATGTTTGAAGCAAGCCAAACCCAGAGATGGCATCAGGCTTACAAGTTTTGTTCTTGAG
AAATACAGATGAAATGTGTACCTTTATTATTTTGCAAGTAAATATGCCTGGGTTGTTATA
TGCATGGATTGCTACTTCTACAGTTCTACTAGGGTTCAAGTAAACGAAGGTATATATTAA
AATCTCTAATCAACTACATACTACTAGCAATAAATTATGCAAGGCTTAGCTGAAAACCAG
ATCAAAGAGTAGACATGTAACTATATGTAAGTATAGACAAGGGGCTAGCAAGCCAAAGAC
ACGAACCCCCTCCATGATGATTTGGCATTCATCCTCTTCACGCTCAAAGATGATGATGCG
CTTGTTATCCACCAAATCACGCGCGGCGACATAGCCATAAACATGCAATGGCCAGGTTAA
ACCTGAGTTTTGTTTGAGTGAGATTCTGACTTCGAAGGGCTGCAGAGTGGTGGCGGTGTC
GACGGAGGAATTGCCAGAAGCAACATCCGTGAACCGCACGCTGGGGATAGTAGCTGCATC
ACATGTAGTTATGCATATGAGATTTCGATTCCTGCATCATAAGTACTAAGAAGAAGGAGG
AAATGGAGAAGTGTATACTTACTTTTTTGCTCCATCGAACCGATGTCATCGCCCCATACT
CGCATCCACCATCTGCTGAACTCGTAGCGATCATCTTCAAAGACAGCCAATGTCGCCTCG
TATACTGGCGGCGCCCGGTGACGCGTTTCCTTGACCGTCTTCCTCACCCTCGGTTCCTCT
GCTTTCTTTCCAATCCTAGGTACCCTTTTCTTCCTCTTCCCGGCCGCCGCATCCTTGCTC
GCCCCCGCATCCATCTGCATCTCGGACTTCCCCTCCTTCGAATCCATCTCAATCTCAATC
TAAATATGACACGCAACTTGGAAACCCTAGCCTCCTCTCCTCGCCGCCGCTTTTTTCCCG
CGAGGAAACCCTAGCCTCCTCTCCTCTGCTATGCGTGGGCAGTCGGATTCGCAGACCCAA
AGGCGCTTAAGAACCCTCCATCGCCCCAAATATGATAGATAGACCGTGACTAGGGTCTAA
TTCTCTGCTTGCCATGGAAGGGTCCTCCAGGTGCACGCGGGTTCCTGACTGCCGGAAGGG
AGCGGGTCCTCATTGAGCGCGCGTGTTCCCCGCTGCCCCCAAATCACTAGTTAGAGTATC
TTCAAGTTCATACCATTTTATTCTTTTTTTTATTATTATTATATGTCATATGTTAGGTCT
AGTCCATCACGTGATTCNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCAACACCTTGTTC
ATAATCAGAGGAC