Contig Data
morexGenes
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Map Locations of contig_1565906 (5874 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1565906

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13553 1 326 bp None Available Available None
MLOC_13552 1 454 bp None Available Available LOC_Os09g39500.1, FRAME:+2, EVALUE:3e-14, 13109.m03961 protein ubiquitin fusion protein, putative, expressed





CDS Structure of MLOC_13553






CDS Structure of MLOC_13552






Contig Sequence (5874 bp)

>contig_1565906 5874 assembly3_WGSMorex_rbca.fasta
CCGCTCCAACGGAGACATACTTCCTCTNAAAGGAAGGAACTTCGGTAACACACCATCATC
TTCATCGGTTCCACTTGTGGTTACTTCTCACATTTACTTTGTGCAAGTATTTATTGTGGT
GTATCCTTTGCTTGCTTGCTAGTGTTGTTGTTAGCATCGTATAGTTTGTTCATGTAGTTA
CATATCTAGACAACTTTTTTGTTCATAACTCTAATCTTTACCTAATAATAAAGCAGATAT
TGCTTCTGGTCGTCCGTCATCAAAATTGTCCTCAAAATTGTGTAATATTACCCACCAATG
CCACATATAAGTCATATAAAAACGTTTCACACACACAATCACGGCCTAGGCCGGCCCATG
TAGGAACCTCCTATACTGCACCCTGTGCTAGGAGACGACATACATCACCAATTTGGGCTG
ACCCATGTATGGAAGACCTGCTTTTTAAATTTCGTTTTTCTTTCTCGGCATTCTTTTAGC
TATTTAAATAACTTCAAGATTTAAAAAATGATGAAAACAAAAAAAAAGAATTTTGAAATA
AAATGTTTAATAACTCATAAATATTTATGGATTCAGAAAATTCTTGCAATTTCTAAAAAA
TGTTCGTACATGCAGAAAATGTTTCGAAATTTAAAAAAAAATGTTTGCAAAATCAAAAAA
TGTTCTTAATTTTTAAGTTAGTGTGTTGAAAAATATTAATAAAATTGATTTAAATTTTCC
AATTCAAAAAATGCTCATGAATTGAAAAAAAAGAAAATATTCATAAATTTTAAAATGGTT
TTCTGATTCATAAAATATTCTTTTATTCAGAAAAGATCATGCATTTCAAAAATGTTCACC
AATTTTGAAAGTTATTCCACCAATTTCCAGAAGATTGTTCGTCAATTCTAGAATTTTTCG
CCGGTTCAAGAAAAATGTTTGCAAATAATATAAAATGTTCATGAATTCGAAATGTTAATG
ATTTTAGAAAAATGTTCGTGATTTTGAAAAATGTTCACAATTTTAAATATGTTCACGAGT
TTAGAAAATGTTCATTATTTTCAGAAATTTTTCACGATTTCACGAAAATGGGAATGATAG
TGAATATCCATGTTTATAGTAAAATGTGCTTATTGCCATTGGAGATTATGCATTTTTTTC
TCCCGCTGCAACGCACGGACCATTTTGCTAGTTTAATTAAAAGCGCATTGACCAAGAGTG
CATTTCGTCGTCCTCTTATTACTCCTCCGAGCCAGCTCTTCGCCGTCGTCTTATTCCTCT
TCCGAGCTCATGTCCAAGAGATCAACGGCTCACCGGTTGTGATGTGTGCCCAGCGACGCT
CATGGTATTCTCACTCCTCGGCGACGAGCTTCGTGCGTTGCATGAGCATCAACATCTTGT
AGGTGTTGGCCTTATCGCACCATGGCGACGACGGAGTCCGAGAAAGACGTCCTAGATGGT
GAATGAAACTAGTTGAGGTGGCTCAAGGAGGCGGAGCGGGAGCTTGGGGTGCGATTGGGA
TTATGGGTGGCGGCGAACTCGAACTCAATGGGGGCGGCGACGGCAACACGAATTATTATC
GATGGACACATGAATCGGTGAAGATAGTGGGCAATATGGGTTGAGAAGGTATGTGCGAAA
GCTTGGAGGCACATCGTCGACATTCTAGCCGGTAGTGGTCAGATCAAACGACACGCTAGC
CATTCAACCAATACCGTGATAGGCGAGCAATTGCTCAGTTGTCCTAAGACTTGCTCTAGT
TGGGGAAAAAGTGAGGCAACGAGGCCATGCTACGAGGAAGATATCATTAGAAAAAAATAT
GATATAGAGGATCTACTAGTGACGGATGTAGAAGGTGTTCGGGATGGACCATGGTTCACC
TTAAAATTTGAAAAGTGATTTTATACAATTAGAGGAAGGTTAAAAAAAACAAAAGAAAAA
AATTGTATACAGCAGCACTTGGCCCACCCTAACCTACTCGGCTAGGTACGCCACTGTCTA
CTACTCCGTAGTAGAAGAAATATGATCCCTCAAAACGAAAAATTATCCTCAAAGTGGGAT
GTGCAACAAATGCCCTGCAAACCACGGAAATAGTGATGTCTGATTTGATTATAAGCGGGA
TTGCATGAATACAACCGGAACCACATAAGCACACGCGGAGGCATCTGTCCTTCGTATAGT
CGTATCTCTAGAAGCCTCTAGAGCTATCTGGCATCGAGCACCATCGATCTACGAGCAGCC
CCACCCAAGCCGTCCGATCGGTTTGTCTCTAGACTAGAAGCCTCCCCTCTCCTCCGCAAC
CCTGGTCAAAGCGACGTGACGTACTGCCAGTTGGGCGCAGAACAGCTGTATGGGCTGGGC
CTTCCATATGGGCCGAGGCGGACAGACGTCGCCGTTAGTGACGGCAAGCGATTACCGTCT
CGGTAAACGGGGCGGTTAGCACTAGTAAAGGTCTCACACGCAGCATGAAATTTGCGATTG
GCGCGCCACCATTAGAGCGAGCGCCGGACTGCAACTCCGGCACCGGCAGGTAGGGTTTCG
CCAGCTCACGCAGCGGGTGGGCGTGGCCGCCGGCTATATAAGGACGACCCTACCCTCCCC
TCCCCAGTCCCCACAGCCGCCTCCAGAGTTCAAACCACCCATCACCGTCTCCCTCCCCCC
TTCAGTTCGGAGAGCTCGAGAAGGAGGAAGGCGAAGCGGCGGGAGCGGAGGGCCGACGAG
ATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACCATCACCCTCGAGGTCGTGAGCAGC
GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTACGGACCATTCTTCC
TACCCCGTCGCCCTCCATTTCCATGAGCATCGAGGTTGAATCCACCGTCTTTTTTTGGAT
ATCGGCCTTCGTTGATCTACTTTTGTGGTGTGTATGTGTTGTGGATCGGTCGCAGGCATC
CACCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTGGACGATGACCGCACCCTC
GCCGACTACAACATCCAGAAGGAGTCCACGATCCATCTCGTGCTCCGCCTCCGCGGGGGC
GCCTGCCTGATCGAGCCCAACCTCAAGGCCCTCGCCCAGAAGTACAACCAGGGCAAGCTC
ATCTGCCGCAAGTAATGCATAAACCCCTGCACCTTCTTTCTCAAACAAATTAGCTAGCTT
TTGTTGGTATACCTGCATGTGCGACAGTCTCTCATTCGATAAAAGTTGTTGCTTTGTGTG
TTTAGTCGTGCAAGGGTATGATTTGCATGTATGCTGGATGTCCAATCGTCTCCCATTCGA
TAAAAATTGCTGCTTTGCGTGGTGTAGTCACTAGGCATAGAAGGGCATGATTTGCATATC
TGTAATTAATTTTTTGGGCCTCGTGCTGTATGCAGTATATCTGAATTGGTTATTTTAATT
GTCAGTAGCCAAGGAATGTTATTGATAGAACCATTGGGATGCAATACTTATTTATGTGAG
TACTATGATACCATTATGTTTTCAGTCCCTTCAGTCCAGATGCTGAAATGTGAGAGTTGA
TACAAAAAAGATGCATCTTTAGTGTCATCTGCCATGTTTGTTGGTTCATCAGTCCCCACT
GGTGGCATCTGATTTCTGCATGCTAATTGTCCATGTACATGCATGTTGGTTCATCAGTTC
CCACTGCTTGTTGTATGTTCCATCTTCTCAATCTGGTTGAGTGGTTTGATGGTTGATTGG
CTTGCGATAGTTAATTAGGCCAGTCACAATACATGAAAATCCCCACACTTACGGTATAAA
CTGCTGATTTAGATCACTGTTTCCTGCAATAAGTGTGCTCATTCTTTGTGAACGATGTGT
AATGTAGTAACTGTTTACTGTATTACTTCTATCTGGTACCTGAAGTGCCTAGTTGATCAT
GCATGATCTGCATCGTACCTTTGCTTACAAGATAAGTTGTTCACAGGAAATATCTGTGCT
TGTGCTGTAGTTAACCTTTTTCACCATTTTGTTTTGTAGGTGCTACTCACGCCTGCCTCC
TAAGGCCAAGAGTTGCCGCAAGAAGAAGTGTGGCCACAGCAACCAGGTGTGACTTTCTCC
TATGATCGAATAATCAAATTGTTTTACCCCATATCTAGGTAGCATCATGCCATCATACAT
GTGTTCATCCATAGTGATGATAACCCAACATGATTTATGTTCTCCAAGATAGCACAACAT
GAGCTAGCATTAGATACTAACCTATCATCTTAATGGGCTTCTCAAACCTACTATGCGTAA
TGGTTTTATGCTATGCCTGATTTAGACTGTCAGTGTGTGTTGTACTCCCGTGCGCGATAT
TGCTTCTTATACTGACGGCTGAAAGAAATAAGTACATGTAGGTTAAGTTTTGTTCCCACA
TTGGTCTTTTGCCATGCCTTTGATCTAATGCACTGCTTCTCCAACCAATTCTTTTCAGCT
GCGGTCAAAGAAGAAGTGCAGGTACTGATGAAGTGCCATGAATGATCAGTTCAACCGGTT
GACTACCTGTTTAAGCTTGCCAGAAGTGTCAGAGTTTTAATAAGCATCTTAATGTAATGT
TCCTGCTGGATGCTGAGCGCTGTCTCTTTCGAAAACTTGTTTTATGGTTCCGGTGCATGC
TCGAGACATGATTGTAACATGACAGCTTAGCTGTTTTGGCTGGAGGGAGCACTTGTCTAA
TTTATCAATGTGCTGTTCTTGTTGTTTTCAATCTTGCATCTTCTGCTGGTCTGGTTATTT
TGCGCCTTTTGCGCTGCTTGGTATGCCGGACCATTGATAGGGCAATGATATCGTTTTTAC
GAAGTAGGAATGTTGGATGTATACACCTTCTAGCCTGGTTAGTTACTCACTAGTACAAAT
GCCCGTGCGTTGCACCGGGCAAAAAATATGATCATGTGTCTCCAGCATACATGGATATAT
TTAGTGAGCGCAATAGACTGAGTCAATAGGCGTGAGACACTGCACCAATTCTTTCTTTTT
TCTTCCAGGGAAGAAACTGCACTAACATTAAATTGAACTCCTCGAAATTCATCTTGCTTT
CACAGGAAAGCCCCAAAAGATAAAGAAGAAATAGTCCAACATTTTAAAAGTTTGTAAATA
TATTAGTTGGATGAGAATAAACATATGAAGCAGCAATGATCAATAATAAACGAATAGGTG
GGGAGTGAATTATTCCTACTTTATTCGCCGAGGTGCATCACTGTGACTTTGCAACATAGA
AGTAAGTAAGCATGGTTATTGGTTTGAATCCATGCTAGCTGTAATGATTTTACTAATAAC
ACATCATTTTCTCAATTTTAAATTCATATTGCTATCACTTACACATTACTGGACAAGTCG
TTTAGACTTCCGACTCGACTGGACTCTACGGCATCCTTCCAGCCCATAGTCCATCCTAAC
ATAGCCAGTGAAAGAGCTATTTGTTTCATACATAATGTCCATAGCTGGTGTCGCCTCTGC
CTGAACAACCCAACTGAGCCAAAAGAAATCTGAGACGGACTCTTCTTCATGCTTGAGGAA
GTATTTCTGGAAAAAATCATGTTTTTTTCTTCAGTAGAAGATGTTTCAAGTTTCTGCTGT
ACAAAACGACTCCTGAATTGATCCGAAATCCAGAAAGAGAACCATATCAGTATCCAACAT
AAACACATCAATTACACTCTAAATTCAGGAAGTAATAATACATGAACTCGACCACATGAC
ATCCAGCAGCTCAAACATCAATTACACTCTAAATTCAGGAAGTAATAATACCTGAACTCG
ACCACATGACATCCAGCAGCTCAAAAGATCAGGTCTTATTGGTCTTGAAACAAACATGGT
TACCCCGCACATTGGTGTTCTCCTCGTGCATTTTTCATGAAGGGGACAAGGGAT