morexGenes - Barley RNA-seq Database

Contig contig_1565905
Source Contig contig_1565905
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1565905 (7693 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1565905

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13551	2	2660 bp	MLOC_13551.2	Available	Available	LOC_Os11g09640.1, FRAME:-3, EVALUE:2e-53, 13111.m01013 protein OsFBX408 - F-box domain containing protein, expressed
CDS Structure of MLOC_13551

Contig Sequence (7693 bp)

>contig_1565905 7693 assembly3_WGSMorex_rbca.fasta
GGTGCTACGCACGACAGTTCTTCCAGAGTCTTGGTGTCTGGACGGATGAGCGCAGGGCGA
TGGGGCCGTTGGGCGCTGTGGTGGCATCGACGGATGTACGTGACTTGCAAGGATGATGCG
GATCTCTATCCTCAAGATGGGTTAGTGGTATGAAGATGATGGAGGCTTCTAAAACGTGTG
CATGTGGTATGCGCTTTAGGTCTGCTGCACCGGTTGTTGGTCCCGATACGTTATCCTATA
GTTTCGTCTACTCCACTGAGGCACGTCCCAAATAGCTCATTAATGCTTGTTGGTTGATTA
GCATTGAAAGCTATATGAATAGTTCACCACAGAAGTTTGGCAAGTGGGCATTCGAGAAAG
AGGTGTCTTATAGCTTCATTGTGATCACAGTAGCAGCAAGAAGGTCTCCCTATCCATCTT
TGTTTTATCAAATTATCTTTGGTCAGTACAACTCCCTTGTGTACAAACCACATGAAAAAT
TTAATTCAAAGTGGCACTTTGATTTTCCAAATATGTAATGATCTGGAGATAGGCCCGAAG
TTGATGAGGTCCATATACCCTTAGTAGTTAGTTTTGAGTGAATCCTATCTAACTGGTGAG
TGAGTTGGACATCCATCAATCGTGTGACCAAGTGCAACCATGAATTCCAGCGTTCTCCCA
CTAGAACCCGCATGAATTGTATGTTAAGTGGCACCGTCTGCAATACATTAGCCACGTAAT
CTTCCTTACGTTGCACAATATTATATAGTGAAGGATATTGTACTGCTAGAGGTGTATCCC
CAACCCATGTGTCTTCCAAGAATCTAGTCATGGCACCACTACCAACCATGAACTTCACCC
GTTGGAAAAAAGTCACCTTAATCTTCATTAACCCCTTCCAAAAGGGTGAGTCATTAGGTC
TAGCGGTAATCTGTGTCAATGTCTTGGACTGAAGATATTTATTCTTCAAAATTTGAACCC
ACATCCCTTGGATCTCCGTAGATATCCTATATAACCATTTGCTAAGCAGAGATTTATTCA
TAACTTGTAAGTTTTCAATGCCAAGCCCCCCTTGATCTTTGGGTCGACATATGATATCCC
ACCTTGCCAATCTGTATTTCTTTTTAGCCTCGTCAATTTGTCTGAAGAAACAAGATCGGT
AGAAGTGTAATCTTTTCCGAACCCCAACAGGAATTTCAAAAAAAAAAAAAAGCATCGGCA
AGCTTGTCAAAACCAAATTTATCAACACCAGCCCACCTTCATAAGACATGAATTTGCCCT
TCCAGCAGCTCAGCGACCTGGGGGCGTTTGTATTGACCACGGATGATATGAGATCCTAGA
AACCAGCCGGCTGTATCTCTGAAATTGGAATCTTGTCGTCTTTTTCATTGGAGTTACTCT
GTCCTTCAGCTCGCTTTGCTGAGTTTCCTTGTTACCCTTATTTTCTCCCCCTCTTAAAAT
ATCATCGGCCTATGACCTTCCCGAAGGGGGATGTGGCTCGAAGGAGGTGCAGGGAACATC
TCGGGTCGATTGTGCCAGGCAGCTCCATGATGGTGACAGCTAATTCTATCCAGACTAATG
CTGCTAATATGGCGTGACCACGGAATGTCGGAATGTACAGTCTAGTTCCAGCAGCTGCAG
AGACATTCTTTCAGAATCTGTATTTTCTACCCTTCGCTTGCTCGCAGTTGTGGCATATAC
CAGAAATCTTTGCCAGAATATTACTTACGGTGGCATGAACACAACTTACACAAGTACTCT
TGCTCTGTTGCTGTAGGTCAAACGAAGACGATGACATCCAACACCTCTATCACTCTCTTC
ATTTCTCAGAAGGCCATTTAAAAAACGTAACTGCAAGTCTGCGACAACAGAGTTAATTAT
ACCTAGTTTGATGATGTTCGCCACACTTGTCAGAAGTGGAGGCGACAGTACGATTGCTCA
ACAACTTGACAAATAACCCAATCCTTCTCACAGCTTCACCAAACATCAAATTTCTTGTGC
AAACAGACAACCAGCACGTCCACGTATGTTTTCAAAGTGCAACAAGCTCCTGACTACATG
ATTTTCATTACTGACAAGAGATATCAGTACTAGTGACATCTTTACATACTGCCCAGCTTA
ACTTAGAAAAAAAAACTACCCAACTGGAAACTGTTTGCCGAGTTGCAACAAACCGCCAGC
AACAGGCCGCCGTTACAACACAAAAGGCTTGAAACATCTTCTATCACTGGTCCAACACAC
CAATTTAGTCTTCACCGGACCAGTTGGGATCAAAGGCCCTAGGTGATACACACACGAGAC
GATAGACTGCACAAAATTGGAAACAAAACATCAGTTTCAATTATATGATAGATACCTTTA
TTGATTCGATAGGAGTTTCTGATTGATTTGATATTCTTTTTAAGCAGAGAGAGAACTAAC
ATAACATGAATGTAATTATCAGAGTACATAGACCAGGAGGTAAGCTGAAACTTTTGTTTA
ATTATCCGAGTACATAGACTTGCAGGGGTATAAGACCTCAATATTCAAAAGACTCGGCTT
TCAGTTAGGATTGTGGCTGACATGTTGGTTTGCCCAGTTTTTCTATGGGAGATCAAGAGA
TTCTATGATAAGAAAATTGGTCACAAACCCATTCAAAATTATACAACAGTCAACAATAGG
AGATTCTTATTAAAATGGAAGCCAGTAAGAGGAGCATAAAAGCAAAGTAAACTGGATAAG
AAGATGAGAGCAACTGGTGTACAAAAGCAAGGGTTAACCTACAACCTTCTGGCCTTGGAA
TCTTCTTGAAACTGATGTTCTCAGTAAGTACGCCATTTCTAGTCATGATCTTCACAATTT
GGTTGACCTTATCCTTGACCCTTAGTTTCTCTTCACATTCAATGCTGACTTCCTTAAGAT
GCACACATGAAAATGATTGCTCTATTCGGACATGCTTTCTTTCACCTCGGGCTGCGCTTC
GCAAATTCTACAGGACACAAGCCATTTTAGTAAGATCAATAAAATACACGTGATATATTC
ATTAGTAGAGTGGTCCAGAAAATCTACCCAGTCACTACGAAGCTGGAGAGTGAGCTTTTC
AAGAACTGGCGTGTGCTGCAGAATGCGAACTAGTGCATTCAGGTCAGTAGCCCTGCACCA
CATGTCGAGTAAAAGAGTCTTCAATCTGCCAAATATGGGGCAACATTCCAAATCCCTTTT
GTAGATAAACTGGAAAAATTGCACAAGTACAAGGAATCAGATATTCAAGTTTTCAATATT
TAAAGGAAAATAATCGAGTTTACTGGAAACTCTGGGCAGATATTTTAAATTGACAAATTA
ATAGAAAGATCCAAGAACTACACCTCAAGTCTATAAACTATCCAATTTGTATAATCACGC
ATCCATTTAATTAAAACCAATGATCTAAAGGTGCACTTCAATAAAAAATAATTAGTTGAG
CGATCACATGAAGAAAAAATAATTAGTTGAGGGCTTTTCTGGACAAAGTACTATAACAGT
TAGTGCCTTAAAGAGTAGTTTTGACTTATACAAATGCAATGAGAAGTGTTCATAATCCAT
TATGTAGCCATTATGTCTTTCTAAGTTTTTCTGCATCTAAACATGGATATAAGAAATTGA
CAAGTACTCCATCTAACTTTTCAAAACTGCAATGCTGTAAGAAAATGCAGGTATAATCAA
CAGTGTAAGAATAATTTATCCTAATCATCAGAAACTATTAAAAATGTATGTCATCCAAAA
CTAAATAAAGAAAGTACTAAGTTGTTTAAGTATGTGTTTACGCATGTCTAACAATCAATA
GAGATATTAGTTTATCAGAGAAACTGTGGGTTGCAAATACAGAAGAAGTGAAAGCAAAGC
ATACCACTTCAGGTTTGATCTTTCAACTCCAAATTGACAACATTGGACAAAGTATTCAAA
AGTACACTATGATAACTCCCAGCAGGATAACCATGACAACCTTCACAGCTTTGATCACCA
CCACAACCCCGACACTTATCCTTGCATCGACCAGTAAGGTCAAGGGATGCTGTATCAAGA
AATGGCATGCTTTCAAGCAAAGGAGTCTTGCCTCCACTGTCATGCAGACGCAGTGAAACA
AGACTGGGTGCAGAAATAGAAACACGATACGCCTCAGGGAAGTTGCATTCGGTAAGCCAC
AAACGCTTTAGCGATGGAAATGACATCTTGCGCACCCAAAGGCCACATTCCTGCATCTTC
AGTTCTTCTAACATCGGACAGCTTGAGAAATCCACAAAATCCTTTTCCACCAGAACATGG
TGAACTTCCAGGCTCATCAGGTGCTGGGAGATGAGAGGCACGATGAGCTCTGTTTCCGCT
CCCACATCATCACCGACGATTTTGAGCACCTGAACCTTGCACAATAGAGCATACTGGATC
CACGAATCAAAGTATATGTTTGGCAAAGGTTCATCAGGTTCACCAGCATAATCATCACTG
GTTGGATAGGCTTGGATCTCACAGCTGACAAGAGGCAAATGGCCACGGAGGGAGATGAGA
TGATTCACGAATTTATCGAAATCCTCAGCGCTGGTGAATCTCTTCTTGTTGGGACCTAGG
AGGCGCAGGACGGGCACGTGCTTCCAGAGGTATCGCCACCGGCGGGCCAGCACAGATGTC
TTCACGGCCTCATCCACCGGCAAAAAGGAGAGCACATGGTGGAGGAGCACGTCTGGGAGT
TCACTGATGTGGTCCTCACGGGTCACCGCAGCCTTCTTCCGCATTCCATCAAACTGGTTG
CGGGCACCACGGCGGTTCTGCAGGAGCCAGAAAATAATGAGCAGGGACCAAGAGAGAGAA
GAGAAATATGTGGAATCAGGGCCGCCTCACCTCAACCCGATATTCGGTTGCTGCTTTGCT
CCGGCCACCAACAGCAGTGAGAGAGCAAGACGACTCATTGGTTGACTCCATTTGCCTATC
AGCAGCAGCAAACCATTGTTACAATAAGAGATTAACAAGTCCAAAGGATTCCCAGTTCTT
AGTAGAGTAATACATTACAAAGTCTTCAACAAGAATCAAGTAAGAATAAAAAAAATTCAA
ACATATTCTACACACAAATTCTTCAAACATATTCTCCATGGACCAACTAAGCGCATACCT
GACGTGGAGTTACCAACATGGTGCACTCCAGGGCTTGGCAAGAAGATAGGTACAGCCGTA
CAGGTGGTCAGCTTCATTGGATACATATGCTCATATGTAAAGATTTTTGTGAGCAAGATG
GCAGGAAAACATGGTACGGGCAGTTTCCTAGATCAAAACCAGATGCATCTGCATGGTGTA
TCATTTGGTACGAGTAATAAACTGACACAGATCGGCCTAGTGTAGTGTATCATCTGGTAA
TTTAGCCACTACTACTTGGTGTTGCAAGCACAACACGATGAAAGTCAACTGATGGTGGAT
GGGAAGAACATATTCAGTCAGCACGGATCGATAGTGGCATCTAGATGTACAGAATACAGA
TGAGATGATATTGGTTAGGCAGGCACAAGCCAAATGAATGCAACACAACCAGCGGTTACG
TTCTGATGTACTCCTAATTTCTCTTCTCACTAGCAGAATGTGATCAGTGGCATCAAATCT
ATATACAGTGGATCAGTAACTACATCTACGGTCACACTAGACATGATCGGCAGTGTCGCA
TGATCCATAAACAGCCATGGAGGATTTGCTCGAATCCTCACCGCGGATTCTGCGCAGAGC
TGCCGCCGGAGGTAAGGTTAACCCAGTAGCTCGGTAGCATCGGCACGCGACGCGGAGGAG
GCGGCGGTGCTAGGGCTTGATGATCCGCCCTTTCCGCTGCCGGTGATGGCTTCTCCCGGT
GAGACATGATCCCGGGGGGCCGCCGGCGGCGTGGACCGAGGAGGCCCTGGGGGATGCAGG
GAGGCGAGCGGCGAGGAGCGGAGGCCAAGGGGGAGGTGGCGGGGGATTTAAGGCGGAGGC
TGGGGGCGCGGGATTTGGCGGGGAAGGGGAAGAAGAAGCGCGCGTGGGAGCGGGGAAATT
TGGGGGAGGAAGAAGCGCACGCGCACGGGACCGCGGTGTCTCTTGTCAGTTTACTCTCTT
TTTTTATAGAAGAAAGCTAAGCTTTATTGATTATAATTCGATCATGGGAGTTTGCCAACC
ATACATGGCGTCCCGGTCCAAGAGAACGAGAGTACTTAGCTAAATCATGTGCTTCGCCGT
TAATATTTCGGCTTTCAAAAATAAAACTACAATGAAAAATAGATGCTATTCGTTTGATCT
CTGTGATGATTGCCCCATAGCGGCCCTGGTTCGCTTTAGCAATGTCTTCCATAACTTGTT
TGGAGTCCGATAAGATGGTGAATTGGTGTAGAAGTAGAACCTTTGCCAGGGCCAAGGCTT
CTCTGCATGCTAAAGCTTCCAATGTAGCAGGATCAGTGACTCCCGCAACCACCAATGAAG
AGCTGCCAAGGTAGTTTCCCCCTTCATCCCTACAAACTGCAGCTGCCGATCCGCCCCTTG
ATCGTAACACTCCTCCATCGACATGGATTTTTGCATGCCCTGATGGTGGCGCTGTGCATC
TCTTCTGCAATGCAGGTACCCCAACATGTCTCTGTGTTTGTGCATTAGGCCGATCGGTGG
GATTGAGCAGCTCTAGCTCGAAAATGAATCTAGAGATGAATGCATTGGTCGCATGCGGGC
TCTGAAACAAGCCCTCGTGTATGGCTTTCCGTCTTGAATACCAGACAGCCCGTAACGTCA
CTGCCAGCCGGATGAAATCCACATGTGATAATGAGTCCATCATTGTGAAAATCCACTGCT
TTGGATTTGGCTCTGTGTTTGCTATCATTCTTTCCACCATCTCGCCGTGATCAAGGGCCC
ATACACACCTGGACATCGAGCACTCGATAAGTGAATGCCGCCATGAATCTTGTGCTCCAT
AGAGACCGCAGGTAGAGGAAGTCGACATGTTGCGATGAGCTCTGACGTCTTCAGTGGGAA
GCGAGACCTTTGACAGCCGCCACAAGAACATAAAAATTTTAGCCGGTACCTTTGTGTTCC
ACAGGGTCTTCCAGGACTGTGCTTCATTGCTTGATGGACTTGGGTCCCCATTCATCCATG
CCTCTTTGCGTCGACGGGTGGCTACGATCATCCTGTAAGCTGATCAGACAGTAAAGATGC
CTTTCCTCTCGAAGTTCCATGCCCAGTAGTCGTCGATGTTTTGGGTGCACAAAGGGATAG
ACAAGATCACTGGGATATCGATCGGGAGGAACACTTCCGCAATCTTCTGTCTGTCCCATG
TGGTTGAAGTGGCGTCTATGAAATCAGATGCTCTGAATGGAGGGTTTTGCACTCTACTTC
CGTATGGACGCATCATCTCATCCCTAGGGATCCAATTATCTGTCCAAACATCCGTAGTCC
TCCCGTTCCCAATGCGCCTGATTAAACCCTGTTTAAGCACCTCCAACCCCTCCATAATAG
CCCTCCATATTTGGCTTGGATGGTTTCCCAATCTTGCTTGCAGAAACGGCATAGTTGGGA
AGTAAACACTTTTGAGTATTCGGACGCTTAGGGAATTAGGTTGTTGCAGAATCCGCCATC
CTTGCTTAGCTAGCATAGCCAAGTTGAATAGCTCGATGTCCTTAAACCATAGCCCCCCAT
TGATTTGGGATGTGTCATCTCCTTCCACGAGACCCAATTTGGCTTTCGGCTCCCTGATAA
CCCACAAGTATAG