Contig Data
morexGenes
Links



Map Locations of contig_1565902 (4476 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1565902

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13546 2 2195 bp MLOC_13546.2 Available Available LOC_Os03g37984.2, FRAME:+2, EVALUE:0.0, 13103.m04128 protein amino acid permease family protein, putative, expressed





CDS Structure of MLOC_13546






Contig Sequence (4476 bp)

>contig_1565902 4476 assembly3_WGSMorex_rbca.fasta
GCACGCTTAACGTTCGGTGACGATAGTATTATTGGGTTATGTATGTTGGTTACTGAATAT
TTTTCAGAGTCCCGGATGAGATCNNNNNNNNNNNNAGGAGCTCCGGAAGGGTCCGGAGGT
ATATTTATATATGGGAAGTTATATTTTGGCTACCGGAAAAGTTTTAAGTTTTTCCAGTGT
TGTGTCGGGAAGCTTCTAGAAGGTTTCGGAAACTACCGGAGGAGTCCGGAAGTCCACCAA
AGATTTCACCACGTCCCAAGGGTTTGCATGGCTGAGGAGAAAATTACATACTGACCAGAA
TTGTGGTTGATAGGCTCAGGTGCATCTCATCATATGGTCGTGTAATCTCTTCTCGATCTC
CAAGTGGCTGAAACAAAAACATCAGATTTCTTAAACCATATGTGAATGTAAGCTCATTGT
TTTACTAGATTGGTCACTAAGTTAGGTTCATCTTTAAAAAAATCATTTATCTGCGTAGCT
TGGAAACGATTCATTTGGTGTGTTTTAAAGGTACAAAGATTCAAAGTGTACTGTTTTTTT
CACATTCGGAAGAAAAAATATTAAAAAAAAGGTCAAATAAGTACTACAATTCAGTGATCA
ATCTGATGAATCTTAGCCAAAAAGGACACACAGTTTCAGATAAACTTGTCGTATTATTTC
CAATTAATTTGCGCTGCCAAACCTCATCTCAGTTGATCCGACATCTATCATAGTGATATC
TAGTACTCCCTCCGTAAAATAATATAACATCTTTTAGATCACTACTTTATAAGATTCGGG
CAAATATGGTCTCAGGTGCTCCTTTGATGTTTCTAAAATGCGCTATTCCCTTTGCATGAC
AACACGTTGGTATACAACAGCAAATATGGATGCCACAAGGCATTATACAGGGCATCATGT
TCCTATCCTTTTTATTACACTTTGCATCATAAATCAGACAACGAGAGGGGTGGTGTCATC
TTCGGCTGGCGGTGCCGCCGAGGACTCCAGCAGATCGGGCAGGTCCTCGCTGACGGAGAA
TCTCAGCCACCGCTTCTTCTCCATGTACACCAGGGCCGGCTGCAGCGCAAAGCCAACAAG
CACCGCCAGGACACTCACGGCCATCACCTTGAAGGAAGCCAGCACCATCACCACGACGAT
CAGGATGGTCGGAGGGATGATCATCAGGACGGAGCCAACGGTGCCCAGCGGGATCCGGAA
AGGCCGGGAGGTGCTTGGGTGGGTCATCCTCAGCTTGATGAAGGCGATGAACTCCAGTAT
CATCCCAAAGCAGTAGAGGTAGTTCTCCGCGGCAATGATCTCCTGGAAGCTCATCCAGGA
CAGCAGGACCACGCCGAACGCCGAGAACAGGATGCCAATCAGCGGGGTCCCGTAGCGTGA
TCTCTTGGCAAAGAACTCGGGGAGCATGCCACGCTCAGCCATCCCGAGAAGCTGGTAAGA
ATCGCTGCTCATTTCAGTAACAAAATTGCCCATGTTAGACAATGCGGCCGCCGCTTGAAT
CCACGAGTGCAACCAGAAACCACCAAGGATTTTTGCAATGTCTGAAAAATACCCGTCTGT
CCATGACTCCCGAACAACCGGAACCGCCGCTGTACAGGTGATCAGAGGGTAGAGGTATCC
CCCGACTACTAAAACAAGAGCATAAGAAAGTGCCCTGGGGAGGGTTCTCTTTGGATTCTC
AACCTCTCCAGCCAATGTACTGATTGAATCCCAGTAGTTGAGGTTCCAAAACAGAGTGTT
TAGATACAGGCCCCAATTCACATTGTCCAGGTCCATTTCAAACCATCTTGAAGGCTCAAT
ATGTGGAATTGCTATCAATCCCATTACAAAGAAAGGGAGCAGAGAGAATACCCCAAGAAA
GACTGCCACCCAGCCAACTATCGTTAATCCTCTGTAGTTCATGTAAGTAAGGGCAACTGT
GAGGATAAGCACCGCAAAAGTCCTTGGAAGCCCACCCCCGAGAGCTGGAACACTGGACTT
GACATAGTCAAGAAAAAGGACTGGGTAGAGAGCATTGTCTATGACACCACTGAGCCACTT
CGCCCAGCCTTGCTGAAAACCCCAAAAGGGCCCAAGAGCTGAAGAGACCCAGACGACATA
GCCACCATTCTCAGGAAACATAGTGCCCATCTCAGCAGTGATTAGGGCTTCTGGAATACT
CCATATGACCGCAAACAGAAGAAAACCCACAATTGCTAGGAGCGGTCCAGCAGCCTTGAC
ACTATCCTCAATCCCAAAGGGCCCCCCTGAGACTTCATAGAATATGAGGAAGACGAGCGG
AACCATGGAAACCTTTGGGATGCCATGCCCTCCCTTACGCTCTTTGCTCTCATTGACACT
CTCATACTTGACACCAACACGATCCTCCATAAGAAGAAAGGCAGAATTTGCTCGTTTTAC
TGCTGTGCTCCTCGATATCTGCAGTTGGAAAGCCAATTATCCATTAAAACACAAGTCTTA
GGTTGTCACTTGTTTTACCAGCAGAATATGTATACAAGGACCACAATTTTGATGTAAAAA
ACTTGGTAACTTGTTCTAAATGAAATTAATAATAGATAGGAAAATATGCCTTTGTGTCAA
TCAAAGATATGCAGTTAAGGAAAATACAACTGAAACCGAATGGTTATCATATAATAACGT
TGAAGGATAACTCCACTAGCATTTTTACCATTCCGTCAACCTAAGTTAGGCTGTTTTCCA
GTCAGGTTTTGCGTTTCACGAAAGCCATACTTGAAATCAAAACAAACCCCCATAGGAAGG
AGAGGTTCAATTTGCTTGTGTTATGCTGTACTCCTCAATTTCTGCAGTTGGAAAGCCAAT
TATCAATGAAAAGTAAACCTTAGGTTATTCCTTGTCAGAACATGGAACACATGTCCGCAA
AGTAATGTAAAAGGTAGTATAAATTATTGTGATAGCTTGTCTACAAGTACTATACTAAAG
AAAAAAAAATGGTTTTTCAATCATGTATAGTTAAAACATACACAAGGCCTTTTCAATTTT
TGCCAGCAAATCATGTATAAGTAACTATCAATGTGGTCATTTTATCCATCTTGTAAACCT
CACAAAATACCTTTTGGTCACCTATAAGATAGCAGTAGTGTTAATTTTGTGAACCTCGAA
TATGTAAATCATGCATAGTGTCTCATAGGATTTTCTTCAGGACGTATGGTTAGCATATAG
TAGATCAGTATGGTATTCAAACTCTTCAATTATTGATACAATATGAGCAAGTTTGAGTGA
TAATTTCCCTCCATAAATATCAGGATTTCTATAAGCTTCTACTCCATGCAGCGATGATCA
GCACTCATTTTCCTCCATAAATATCAGGACACTCCCATCACCAAAGCCCAAATCCATGGC
GCGATGGCCAGCACAAAATCTACTACGGCACAATGGATTGTAAACGGTAGTATAAAACTA
ATTTCCATACCAACTTGGTAGCTTGTCTACAGGCATTATACTAAAAGAAAAGAAAAAAAC
CGCTTTTCAATCACGTATATTCAAATATACACAAGGCTTTTCAACCTTTGCCAGTAAATC
GCATATACGTAACTATCAGTGTGGTCATTGTATCCATCTTGCAGGCCCCGCAAAATACCT
ATTGGTCACCTATAGGATAGCAGTCGTGCTAATTTTGTGAAACTCGAATATGTAAATCAT
GCATAGTCAAAACATACACAAGGACATAGTTAAAAACGCGTAGGGCTTAATTGCGCTTAA
TGTGCACACAATGGCAAAACGTACAACTAATGCCTAGCGCTTTTTTTTTTACTTTGCAAA
AGGCTTAGGTGTCTCAAATGGAATTTCCGTATGGCCATAGATAAGGTACCATATAGTACA
TCGATATGGTAATTAAACTGTTGAATCATGATACGATACGAGCATGTTGAGGGATAATTT
TCCTCCATAAACATCAGGATTTCTACAAGCTTCTACTCCAATGCAATGATGGCCAGCACT
CCATCACCACCATCATTACTGGTTAATTTTCCTTCGTAAATACCAGGACACTCCATCACC
GCATCCCGGGCAAAAACCTAGAAACTGCCACCCATGGTGCGACGGCCGTGGGCACACAGA
GCATGGGAGAGGAACACGTGGCTTACCTCCTGTGCCACCGGAGGGAGGCGTCGGAGTGGA
AGAAGAGTCCCCGTTCAACACCACACGGATGTCTCTTGCGCACCTGCGAGAGGAAGCCGC
ATCAGTGAAGAAGAGCAAACGGAATCGAACCAGGCAAGCAAGGCGCGGCCGCGCAGAGAG
GAGGAGCGGGGGTGGACCTTGGCTCGACGAGCTCCTCTCCCGGCGGCGGCGGCGCGCAGA
TGCTCCCCTCCCGGCGCTGCCCTGCTCCAAGCCCTTGTCTACGGCGCGGATCGGGGCAGA
CCTGCTCGATCTGCGGCCCCCCCGACCTGGGACGGGGAGGGAAGCTCGATCCGCGGCCCG
ACCTGGGGCAGGGGCAGAAGGTGAAGGGAGGGAGGG