morexGenes - Barley RNA-seq Database

Contig contig_156587

Source Contig contig_156587

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_156587 (1728 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_156587

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13524	2	549 bp	MLOC_13524.1	Available	Available	None
MLOC_13523	1	453 bp	MLOC_13523.1	Available	Available	LOC_Os11g47730.2, FRAME:-1, EVALUE:3e-24, 13111.m04757 protein expressed protein

CDS Structure of MLOC_13524

CDS Structure of MLOC_13523

Contig Sequence (1728 bp)

>contig_156587 1728 assembly3_WGSMorex_rbca.fasta
CGGCCCCCCCCCCCCCCCCCGCCCCCCCCCCCGCGGCCGGCGCCCGCCGGTACAGCTTCT
CCTCCGCATCCTTCAAGAACTGGAGCTTGGGCGGCGGTGACGCCGCCACCGGGGCTGGGC
TCGCCGCCGGGGACTCGAACAGGGGGTTGTACGACTTTTCCATGGCCGGCGGGAGGGGCG
AGGACGAGGGCGTGAGGAACGGCGTCTCGGAGCAATGGAGCAGGTCACCCAGGCTCCGGC
TCCTCCCGCACCTGCTCCGGCCGTCCTCGGACTCGAGGTCCTCCTTCGTCTCCTCCTTGA
TGGTGAAGAGCAGCCGCGGTGGGCCGACGAGGCTGCCGAGCCGCATCAGCTGCGCCTCCA
CCGTCTCGTCGTCGTCGTCGTCATCTTCGTCGACGACGACCTCGGCCACGGCGTCGTCGG
CTTGGCGCGGCTCCTGCGCGTAGGTGGACGCGAGCGCGGGCGGCTTCTTGAAGCAGAAGA
GCTGGAGCAGCTCGCGGGAGGAGGAGGAGGGTGATGATGCGGCGTCGGAGATGGCGGCGG
CGCGTCGTCGGTGGCGGCGCTTGTGCACGAGGAGGTAGTAGAGCTCGGCGGCGAGTGCGA
GGAGGAGGAGCGCGGACACCACCGTGAGCCCGACGCCTAGCTTACTCAAGCCTCGCATCT
TTTTCTCCCCCTTCCCAGGGGTTTCTTTTCCTTTCTTCCACGGCAAACTAGCAGGCCAAG
CAAGGCATCAATACTCCTCCCACTCAGACTAACAAAGGCGAAGTTGAATCTAGAAAGCTC
AGACCGATGAAGAGAAGAACCGAGGAGCCTGACACCTAACAGAAAGAAGAGGCAGTGGAA
CAGGAAGAAGCTGGCTGCCACCAAGAACAGTTAGCGAGGAGCTGGAGCCAAGAAATCAAT
CAGGGCAGGAGACACATGGACATACGGAGTGGAGAAGAAGAAGAAGAAGGAGAGGATGAG
TAACAGTGGAAGCAATCAAAGAAGAGGGAAGGAGAAGGGGAGGGGAGGGGAGGGGGACAG
CAAAACAAATGGTGCAGTACAGTGCAGTGAATCTGTTTACTGAATCGCATGTGTGGTGAT
GATAAGGCAAAGGCAGGGGGGAAAGCACGAGGCTCTGCGTCCGAGGAATGCCTTCACATG
GCATGGCATGGCATGGCATGAAGAAACAAAATTGACAAAATTAATCAAACTATTTCACAA
ACTAAACTGTGTTTAAAAAAATAAATCAGTAATCTGCTTTTTATGTCTCATCCCACAGTT
AGGGGTCACAATATACTACATATAACGCAACTTCAACAGGTCGACCCAAATGAACAACTT
TTTTGTCCGTTTTTTTACGTTTGGGTCATTCGTCGGTTTGTGCGTGTTCTTTTTTTAAAG
GCCAGTGCTTTGCGCCAGCGCGCCGGCCGAAACTTTTGGTCGATCACGCGCGGGCCGCAC
GATCCGCCAACCATCGCGCGTCCGCACCGTTAGATCTTCATGGAACATTTTTTCCCGATG
CAGCAAAATTTTGGCGTGATGCGGCGATTTTTGTCAACGGTTGCAACAAAAAAAAATTAT
AGCAAAAAAATATCTACGTGATCGTAGCAAAAAAAGAAGCTGACGGTGTGTGATAGCAAA
AGTTAAATGCCGGTTGTAGCAAATATCTACGTGAACGTGGATGCAACTTTTTTACTGAAC
GGTTGCAGCAAAAAATGATGCTGGTTGTAGTAAAAATTAACACGGTTG