| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_1565866
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_13521 |
1 |
469 bp |
None |
Available |
Available |
None |
| MLOC_13519 |
2 |
911 bp |
MLOC_13519.1 |
Available |
Available |
LOC_Os05g46480.2, FRAME:+2, EVALUE:2e-11, 13105.m04962 protein late embryogenesis abundant protein, group 3, putative, expressed |
| MLOC_13520 |
1 |
891 bp |
MLOC_13520.1 |
Available |
Available |
LOC_Os05g46480.3, FRAME:+1, EVALUE:8e-24, 13105.m04963 protein late embryogenesis abundant protein, group 3, putative, expressed |
CDS Structure of MLOC_13521
CDS Structure of MLOC_13519
CDS Structure of MLOC_13520
Contig Sequence (5600 bp)
>contig_1565866 5600 assembly3_WGSMorex_rbca.fasta
CCACTAGCGGGGTGGGACTAAACTTCACACCACCTTGTCATGCCACCACCTACATGGGCC
CTTGGAGATTTTTCTAAAATTCTCTAATGGGCCTAAAGCCCACTACCAATTTCAACAGGT
TTCATATTATTTTCATGTATGAGTCATTTTGTATGTGTGGTGTGAATTTTATTTGTTTGG
TTGTTTGCATTCTCGTATTTATAAATACAAAGTGTTAAACTCAAGGTCTGACGATAAATG
AGTAAAACATGGTATTCCCTTCGTCTTCGTGTACAAGTCATTTTACGAAAATCATATAAT
CCCAAAACACTTAGGCGCTAGGCATTAACTTTCATCTTATTTCTTGTTTTTTGACATGAA
TAAANNNATCAACCAATAAGAGACGTGGGACGTATATGTTTTTAATGACTTAAGACCAAC
TAAGACGACATGCAGTAGTTAATTCATTACATGCAATGCTATTAATTAGCAAATTAACAT
TAATTTCTTTCGTTTTTCTTTTCGTCTTGGTCATTTTTTGAGCAGTCTTTTCGTCTTGGT
CGCGATACATTTTTTCAACCACATTTGTTACTCCAGAAAAATGTCTTTAAAAGCACATAT
CAATGGACAGATCTTAAGCAACTGTGTTGTGTCGACATACCATTGTGCATATATATACAG
CTGAATCCTGAATGGACAAGTGGCGACAATGACATATACCATGGCAACAAAATATCTCAT
ATAAGCCCAAGATACTTCGAAAGCAATGTAATATTCTCCTCAATATCAACCTCGGCAAAG
GGGGCAAATGGCCTATATAAAGGAAGAACACACGTCTCTCCACAACAAGCGCAAGAAAAG
AAGAACACAAATTATTAGGCACCAACACTTCATCGACTTAGAAAATGTCTAGCTGGTTAC
AAGAGAAGTCGGGGGAGGTGGTGGAGACGACCCAAGTTAAGGCCGGCGAGGCCACGAAGA
TGGCGTCCGAGACGGGGCAGTCCATCCAGGACCGTGCCGTCGAGGCAAAAGACCAGACCG
GCAGCTTCCTTGGCGAGAAAAGCGAGGCTGTCACGAAGGCTGCCTCCGAGACCACCGAGG
CGGCCAAAAAGATGGGCGGCGAGGCCATGGGGAAGGTGTCCGAGACGGTGCAAGCCGGTC
AGGATCGCGCCGTCGAGGGCAAAGACCAGACGGCCAGCTTTCTCGGCGAGAAGACGGAGG
CCGTGAAGAAGACGGCCACCGAGACTGCCGACGCCGCCAAGGAGAAGTCCACCGAGGCCG
CGCAGCATGTCCAGGACACCGCTGCAGAGTACACCAAGGATACCCCGGTCGCCCCCAAGG
AAAACGTCTTCCAGAAGGTGAATAGATCACTTGCAAACCATTCAAAGATGACACACGTAA
AATTGACCATGCATGTGGGAGAAAATATTGTGTGGTCATTTGAGCTGTTGATGCTGAATT
TCTGGACGTGTGTTTGTTTGTTTGTTTGTTTGTTTACAGGCCGGCGGGAATATTGTGGGT
GCCGCTACGGACGCCAAGGACGCGGTCATGAACACGCTCGGGATGGGAGGAGACAAGTGA
GATGTTCATGGTGCCACCAAGAAGATCACAAAGGATAATTAGACGCGTCTGCGCCTGCCT
GCTCTTTCCCTCCTTCCGTTTCGTTGTTCTCTCGATATAATTTAAATTTCAGTTCCAAGG
AACTAATTAATTTATACACACGCTCCTTGGTGTAACTTTGTTTGATGTATGGGACCGAGG
TATGAATATATTTTCCACCAATTATAATCAACATGAGTGATTTGGATGTTGTACGTTTTT
CTCATAATAAGAAACACGATGTATGATCATAATCAACATGAGTGATTTGGATGTTGTACA
ATTTCTCATAACAAGCACCACGTATAATGTTGACGTCCACATGTATGTACCCAAGATGCA
CGAACACACATAGCTCATTACAGTCCTTTGAGTTTGAAGATTTATCATAGGCGTCTCGTT
ATTCACGGATGCTTCGTGTATCTGACCAGAAACACAATTGACGAAGGCAATGAATGGATG
GGGATTGACGACACCTTGTCGAACTCGACTAGTACTCCCTCTGTTTTTTTAGTCCGCATA
TAAGATTTGATCAAAGTCAAACTCCATAAACTTTGACTAAATTTATAAAACAAAATATAA
ACATTTATAATATGAAATTAATATTAGTAGATGCATAACGATATCAATTTTCATAACATA
TAGGTATAGTATTATAGATGTTGATATCTTTTGATATATATTTGATCAAACTTTGTATCA
TTTGACTTTGATCAAATCTTATATACAGATTAAAAAGAAACGGAGCGAGTAATTCCGAGT
ACATAAATAAGCAAAGAGCCTATCGATCGAGCGAAAACAAAAACAACGAAGTCAGTACAT
AAAGAAATGAAAGGTTGCTTCCAGACCAGAATCCTGCTCAACAAGTCAGCAGCATGGACC
ACTCGTGGTTCATCGCCAAGAGCGCACCGTGTGGATCTTATCAGGCAAACTATTCGGTGG
CGCTGAACTGCTGATGATCCAGATAGCGAATAATATTGAACATCTGTGATAAACCGATAA
TCAATGTAAACTGACGGACGCCACACAAGCAGGTGCTACTAACAGTAAACTAACTGACGG
ACGCCACACAAGCAGCGCTAGCAGATATTTCCGATTCCCCTTCACCGAGGTCGCAGCAGA
CACGTGATTCATCGCCGGGCCAAGCCGGGCACATCAGCGCCGATCCAGTAAATAGTTGAG
CCCCTCTTTTGGCTGTTCACTTCACCCTATGGTAAAACCACACGGTATTAATGGACGGAT
CCAAGGCAGTTGGGTTGTGCCGACATGCCGCTACGCATCAATGCTGGACAAGTGGTCGAC
AAGGATATGTCCTTGCAAGAAAAAGAAAAATCTGATGCCATGAGAGCGATCTGTAGGGTG
CTCTGTATCATCTTCACCATGGTCTTCGGCAATGGTGCCAAGGGCGCCTATATAAAGCAA
GAGCACGAGGCTCTCCATGAGAAGCAAGAGAAAGAAGATAGAACACAGACCACCACCTAC
GTGCTCCCACGCTCTACCATCAAACTTCAAAAATGTCGGGTTGGTTCGGGGGCAAGACGA
CGGACGCCAAGGCCGACGAGGCCGCCAAGACGGGGCCGTCCGTCCAGGACCGCGCCATCG
AGGCGAAAGACCAGACCATCAGCTTCATCGGCGAGAAAAGCGAGGCCGTCACGAAGGCGG
CCTCCGACACCGCCGATGCGGCCATGAAGATGGGGGGAGACGCCATGGGGAAGGTCTCCG
AGACGGGGCAGGCCATCACGGACCGCGCCATCGAGAGCAAAGACCAGACGTTCGGCTTCA
TCGGCGAGAAGGCCGAGGCTGCCAAGAAGATGGCCGTCGACACCGGCGACGCCGCCAAGC
AGAAGTCCGCCGAGGCCGCGAAGTGTGTCGAGGAGACCGCGGCGCAGTTCACCGGGGAAC
CCGCCGCCCCCAAGGAGCCCGCCGGCAACATGTTCCAGCAGGTGAGTCAATGATCAATCG
CTTGCAAACTAGTCAAATACGGGTGTATGTCACGTACGTCGAGGAAAATTTTCTCTGGCC
ATTGGAGCAGTTGATGCTGAGTTTCTCAATACGGGTGCATGTTTGCTTGCTTTTTTTCAG
GCTGGCGGGCAGGTGATGGGCGCCGCTACGGGCGCCAGGGACGCCGTCATGAACACGCTC
GGGATGGGAGGAGACAAAGCCGACGCCGGCAGCGCCAAATGAAGACCGTTGCCCTCATTT
CGTTTCGTTATTCGTGTTGCTTTATTTTCCGTTCCAAGAAACTGATTTCTAGGCATGCGT
CGGTGTTACTTCCTCCATTGTATGCAAAGATGCTTTGAATATACGGATTTGCAATTCTCA
TCTGATGAATATATATTCTTCACATTTCAGTTTTTTTTTTCAAACCATGCATCAGGCCAC
CATGTTATAATTTTTTAGGGGAGCCAGCATGTTATTTTAATGGGTGTGTCAATCTCTCGT
TCGAAAGATTTAATCAAGTCTTGGTCAAGTGAAAGTATCTACAACTTTTTTAAAAAGCGA
GAGTATCTATAGCGGGACCCTTATTTTCTTCTTAGGGCGTCTCTAACGCTGACCTGTAAA
TATTTTTGGTATATGTCCATTATTATGTCCGGAGGTGGTCCGCGTACATGATACGAAAGA
AAGCAATTCAAAGCTAATTGCAAAGTATCCGGTTAAGAGGAGAAAAAATAGATGAGGATC
ATGCATGTAGTCAAATATTTGTGGTTGAGAGAAGAGAAAGAAGAGAGGGACGACGCATGG
GCGGATAGGAGGAGGGGGAGAAAAGAAAGACCATGCATGTGATTAGTCAATTGCATGTCG
GGATTTCGACAAAACTCTCAACTTTTGTTTCCAGAATACTAGTATTTGGACATCCATATA
GCTTCGCGATACAGGTCCCCATTGGATTGCAAAAGTGAACAAATGTGTCCTATCAGACAT
ATACCGGTTTTACAGGTCTCCCTTGGAGTTGGAGATGCCCTTAGACATCCGAAAAGTCGG
CCGCGTGAGTGTAATGAACCTAGTAGTACTCCAAGATGACGTGAAAGAAGGCGGAGACTG
GGGGAACCAGCCCGTGTCAAGGTAATTGACAAAGATGGGAGCCTCTCTGACATATACCTC
TCTTGTGCCAGCCACTTTGAGCTTGGCCAGCCCCCATTCATTGCTCGATCCACCGACAAG
AAGACGCACTTTGTCGAGCCCCCCAGCATTCACTATCTTCGAGCGAGGCAATGCTTGTGG
CGGAAGATCTGGGCGAGGCTCTCCCATGCCCTGAACCCTTTTCACTCCCGAGTCCTTTCT
CTGCGGTGCTATGGAAGGAGATGAGGAGTGCCCCGCTCAAGAGACAAGAGGAAAGTATGG
GGTTTCCACTGACGATTGTTGTCTTGTGGGACTCTCAATCAAATAGGCTTGGGAACTCGA
AATCGCTCGTCGACCGAGGAACTGATCCTACCTTCCCGCTCGCCGCAATTGGGAAGTTCA
AAGCTAGAATCGAGGAGACGCGAGTACACACTGATGATTCAGCTCATCGTCATAATAACG
ACGCACAAGATGAAGAAGTGGGGGTAATGTATCACCTCACCTAGAGACTGACGACACTGT
CAGATGATGGGTCCGGGGCTACTAACAGACCACTAAGTTATGGGGTATCCATGATTCGGT
GACCAAGGGTTTCCACGGAGGTGTTAGGATGAGCAAGAAGGGGAAGGCGGTGGCTACACG
GAACCCAGAGGTCTGCATGAAGAATGATAGGACCCCAGGAGGGCTTTTTGGGAAACGATT
CCACCGAATCGATAGAAGGTGGAAGAAACGACTATTGACCAACGGTACAGAGGCGGTTCA
TTCCCGCAGGAAAAAAAACGTCGAGAGGAAGGAAGACATTTGACTTCCGATCTCCCATCG
ATGGAAATCCATATGCGAGTGGTCATCTACAGCGTAGCATGATGACCGCGTGTGTGCATG
AAGGCTTGCATTGTACTCCCTCAGTTCCTAAATATAAGTCTTTTAACATATTTCATTAGG
AGTCTACATACGAAGCAAAA
