Contig Data
morexGenes
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Map Locations of contig_1565740 (5349 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1565740

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13465 6 1768 bp MLOC_13465.1 Available Available LOC_Os03g05830.1, FRAME:-1, EVALUE:9e-27, 13103.m00634 protein transposon protein, putative, CACTA, En/Spm sub-class, expressed





CDS Structure of MLOC_13465






Contig Sequence (5349 bp)

>contig_1565740 5349 assembly3_WGSMorex_rbca.fasta
ATGTAGCATCTACATCAATAATTCAACCCCAAGCAGTGGTCTAGGTGTCAACATTGCATG
GCCTGTGTGGATGTGCTTAGAGAATGGGAAAAAAGGAAAACGAGGGCTAACGCTACTGTG
GATATTGGCATGGATTCTGTGGATAAAACGGGAAGGGGGTGTTTATTATAAATTTTAAGG
GAAGGAAACTCCTGTAGATATGAGTCGGGGATCTGATAAAATTGTAGGTGAGGATAATTT
TACCGGCGTGGAATCTAGGGAGGAAAAGAAATAAAAGTGATGTTGTGATTTCTACTTGGA
CCAATAAGAAGGCTTACATAATTTTACCAATAAGCAGGCTCACCCTACTTTACAGAAGCT
GGACAGGATTCTGAACTCTTATGTCCTGTGATTGGGAAAGTTTATTTCTTTTGGTTAATG
ACAGGAAGTTAGTTAAAAATACTTGGGGGTAATTGTAACATTGGCCACTTCCTTATGAAG
TACTTGGGGAGTTGGGGGTAACTGTTGATGATGTGGTTTTGCCATTCCCTGGCCTTTTGG
CTAATTGTAACATTGGCCACTTCCCTATGAAGTACTTGGGGGTAACTGTGCTGCATTAAG
GAATAGTGACTGGGAATTCATTGTCAACAAATTGCTGTTGAGACGTGATGCCTGGGTTGG
GAATACTGTATCCATGCATGGGAGGACTGTACTTCTCAATGCTGCTCTTGCTAGTATTCT
ATACTATCATATGTCCATATTCCTGTTAAACAAAACTATTATGGAGAAGCATGATAAAAT
CAGAAGGGGATTCTTTTGGCAAGAAGGCAACTTGAAAGAAAGATACTACCTGGTGAAATG
GGCTAGAATTTGTAGATCTAAGAAAAAAGGGGGCCTGGTTGTGAAAAATCTCACGAGATA
AAATATTAGCCTGTTAGTGAAATGGTGGTGGAAACTTGATCACCAGAAAGGTTATGGCAA
AGATATTATCAAAGCTAAATATTCGAAAAATTCTGATGTTGCTTCAATTCAAGGGAAGTT
TTCTGACTCTCCCTGCTGGAAAGCTATCTTGATTTATATGTGTGGCCAGACTGGAAAGAT
CAGTTGGAAAACTTGACACCTTTGTGTGAACAGTATCCTCAATTGTTTGGTGTTTGCAAC
TATCTTGACTGTACTTACTGTGCAGGAAAGTTTCCATGTTGACGTTAGCACCTTCTTCAG
TAGGTGGCGCTCTCCTGAGCTTTTAGAACAGTGGAGTAAGGTGATGGATTGTGTGAGAAA
TTTGAATTTATCTACTAATCCTGATGTCATTTACTGGTCTTTGGGATCTAGTAGCAAATT
CTCCACGAAATCTGTCTAGCTGGTTTGGAATGCTAAAATTCCCTACAAAAATCAAATCTA
CTTGTGGCAGTTATCACAAGATACTTTGCTGGCCACAGATGGTATGAGTAGCAGAAACTG
GCCTGGCAATCCCAGATGTTCTTTCAGCAACGAACGGGAGACTTCCCAGCTTTTATTCTT
TTCGTGTCCACGTGCGAGAGTGCTTTGGAGATCGGTGGGTGCTGTTTCAGGCACTAATCT
TTGCCCTAACAATATGTGGCAATACTCCTCTTGGATGTATGCTTTTTTACCTGGGCATGA
GAAGGTTTATACAATTGGATTAGTGGGTGTTAGCTGGGCCATTTGGAACTGTCGTAACAG
AGCTACATTTGAGCTTAAATGGCCTAAAACTCCTTTTGAAAACTGTGTTCGCCGTTTGTG
CATCCCTGCTAAATTGGGCAAGTTTGCAGAGAGATGCGACCAGTGAGGTGGCGATCCAAG
GTGCCGAGATGCTAAAGACCAGTATGGCTTCGCTGATGAGGCTCTGCGCTGCAGTACATA
GAAAGGTGGCGCCGTCGTCGTGATGATCTGGGTCCTGGTTACTCTACTCTTTATCGAGGA
TTTTGCTGTCCTTTATGTTTAGGTTGTTTCCCTGGTGTCGTTGATTAGCCTGTGTGCTAA
TGGTCTTAACTATGTTTTGTTGGAACTGCTTAGGTTGTGCTGTGCAGACAGGTTTTCGCC
CCGAGGTGCATGATCCGCCTGAAGTCACGTGTGGTGGATTTCCTGTCAGTGTGTTGATCC
CGTTCTTCCTTTCCCCTTTCTTGAACCTCTTCAAACTGCTGTATTTCCGTTATGTTTGTA
AATGGGAAGGGGCTGAGCCGGTTCCAGAAAAATAGATGTCAACATTGCAGAGATGTTTAC
AAATATATTGGGGCCTTGGGCACTTTCCATGACATTATATTGGGGCCTTAGGGCACTTTA
TTGAGATGAAGGACTTTGCAGATATAACGGATTAGAGGAAAATGATGTGAGGATTGCTTA
CTGATTCTAGTATTCTATTGATACTACTTCCTTTTTTATCTGCCTCTGCAGAACATTATT
TAAATGAACAAAATACAGGAAGTGAAAAATAATACTATTAGCATTAAATACAAGAAGACT
AGGTGGCTGACCTGTCTCAACTGGTCCTCGGTGATATTGGAATGAAGGTTGCCAACATAC
AGCTTTCTTGCTCCACCTGAAGCTGCTCCACCAGATGTCGCATTTGACTGAGCTAAGTTC
TTTTCGGCCTCTGATGGCTTAACCATGACTGCTTGCCCTAGGAGCGGCTGACCGGTTAGA
GCAATTGCCATTGGAACAGACATGACATCATAGAACTCGATGTACCTGTCAATTTAGGCA
GATCATTACTACAGATATTAGAGTATTCAACGAAAGATATTTTACCTGTCATAGAAAGTA
GACCTTAAATGGGGCTATATATGTTAGAAATTTTCATAAGCTTCAGAGTATTTTCGAAAT
TTTGATCATTTTTGTGAGTAGGAAATTTTCGAACTTGGTTCTTGGTTGCCCTCGTATTAT
CCTAAGAACCTGCACCAAGTTTTTGTCAAATACTCTGGAATCAAACTGCCCTAGATTGCT
GACAGCATCAGAATGATCTATATTCCATCTTACTTGTAAAGTGCCGATAATCCCAGCAGG
TAGACCAAACTACAAATATTTCAGTGTGCAACCCTGTTGAGTATGACAAACTGATGAAAA
ATGTTCCCCAAGGAAAAAAAATCAAATATGAACTTCAGAAAAATGCTCATGTAATCATAC
AGCCAGAGACAGATGGAAAACAAATTATATGACAAGATCTAAATTCTAGTGGGCAAGCAA
CAAAAACAGATACCAAACAGCTATATTTCCTAGAAAAAATATATTATCATAATTCATCCC
TAATTTCCAAAGTTTCTTTAGGCAAAGGGTACTGTCAGAGTCCTAATAACTACATATGTA
CTATGCACTAAATCATCAATTTGGAAGCAAGCCTAACCTGTGCAAACATGGTAGTAACAA
ACAATAAAATATACTATATGATAGCATCTCAGAGCACCATCAATCTCAACCAACTGATGG
TGATTATATATGCTCACAGCTCCATTTTCCCCTTTTCTAGTGCCGTGCATACTGACTTAT
TTTCTGGATTTGTGCATGTTACTGGCAGGGAGCTTGATAAGCATTCACGATTTGACTATG
ATATGGTAGGAAACCGAAATTTAACACATGTTGTTGGTTCAATTATCTGAAGGCGAAATA
GTTCTGAACAGGATATCTATATTCTTGCAAAACCATTCAAGGCTTGAATATACATCACAA
CAAACAGGTGTTGGAACTAACCCAACTCCTTTGGAACGCCGCGAGTTTCGGTCCATGATA
AGGCGGACATCACGAACCTACAGAGAGAAACAAGAGTTAGATAACTTAAATCAAAATTAT
GCCTGAAAGCTTTCTGCACAAGTAAAGGATCAATGACTACTGCAAATTACTGCTAAAAAT
GATAATCACATGCTTGCAAGACATGGTTCGTTACATAAGTAGAAGAATGAAATAGGCCTC
TACGAACGAGTTATCATTATCCAGGACAGCTGCACCATGTGAACGTCGATATTCCAAAAG
TCAGTCATTAGTTCAGTATAACATTAATAAAGTTTCATTCCTCAGCTTGAGAACAGAACA
GTTCAAATTCACTAAAACACAGCAATAGAAATCCACAGCATCGTACTCCTGTGAGAAGGA
AAAGTTTTCAAATTAGAATGCAATGTGGTGTAGGTAATTTGCATCACCTTCCCTGCTCTT
GAGAAGAACTCATAGACGTCCCTTTCATCTGCCTTCAACGATAGCTGCAGTAATGCTGAC
AACATTAACTTAATGAATAAAACAGCAACATGATGTTTTTGCTTGTGAGGCTAACCTGGA
AGGCAAATACAGTCCTTTGATCTCTTTCTGGGTCAACTTCTGGTTCTGTACCATCATCTT
TCTTACGCCTGCACACACAAAAATAAATAGCTTCAGCAAAAGAGAGAGCAGCATAACAAA
CATCCAGTAGGAACAAATAGTAATTGTAAACCCAGATGGCATAGTCATTGCTAGTCAGAA
ATCCCCATGCAGAAAATATTTAACCATCTTCGAGAGCCAAGGGCAGTAGCAGCCGATGCC
AACTTGTCAATATTTCACAAGAAAAATATTACAGATTCATGACCTGATATCACGAGTCAG
GCTCATTGCTGAAACCATCTGAAGAGAGCTCTAGCATTTTGCATCCGCGAGTCCCATATT
AATGTTCAATATTTAAACTCAACAAACCTAGAAGATAAGAAGTGTACTCTACAGGAAACA
TTTAGCAGCTACAGAATCACTGGAGATTTGTGCACAGTAAGGTTACTATGTTCCATGTGT
ATGTATAGCGGAGTTAGAAAACAAGCAGAACATAAACTACTAGGCTTCAGCAAAAGAAGA
AGAAAGACAAATCAAGAGCAATGAATCATCTCCTCTCATTAGAGCATCTCTAGCAGACCC
CGTATAATGCCGACCCGCAAAAGTCATTTACAGTTCGCGAAAAACGGTATTTGCAGGCGG
CGCGGGCGCGGACAGAGGCAAACCCCCCCAAAACGGACCCGTAAAAAAGGATATTCGCAG
AAGATGTTATTATACGGGTCGTCAATGCGGGGTCTGCTCGGGCGCCACCGCGTCGACCCG
CAAACCGAATACCCCGTAAATCAGAATTACTCATCATGTGCAATATAAATAAAATGTCAA
TATTACAAATACAGTGATCATCCAAAGTACAATAATTATTCAAATTGTCATAGAAGAACT
CCAAGTTCATGCCTCTCTCGTCTTTAAGAATCATATTGTGAAGAATAACACAGGATGTCA
TGATGTTTTTCAAGGATCGCTTGTCCCAAAACCGAGCAGGACCTCGAACAATGGCAAACC
TAGATTGCAAAACCCCAAATGCTCTTTCAATGTCTTTCCGGCTGCCTCTTGTGCCCTTGT
GAATTCAGA