| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_1565655
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_13440 |
3 |
1299 bp |
MLOC_13440.1 |
Available |
Available |
LOC_Os08g34190.1, FRAME:+3, EVALUE:2e-123, 13108.m03576 protein stromal cell-derived factor 2-like protein precursor, putative, expressed |
CDS Structure of MLOC_13440
Contig Sequence (8253 bp)
>contig_1565655 8253 assembly3_WGSMorex_rbca.fasta
AAAAACAACACCATGACAATTCTGGTGAAAACAGCGTCAGTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGATACGATGGA
GATGTATGAGGCACCCACTAATTTAATTCAAAAGTTGCTCTTTTCATACATTTTTTTGGA
TAATGATTCCCTTCAGCCGACCGATTATGTGCGAGCTTCCATCATCTCTATGTTCGTCGG
ATGAATTTTAATCAACAATCCGAAGCTAACTCTTCGATGCCCATGTTTTGCAACTGGTTC
ATTATTTCAAAAAGGGGTTCTGCAACCAGCTCCTTGTTGCAAAACGACTAGGAGCTAGAT
TCCACAGCGAGTGCGATCAGGGAGGCCAATTTTTTTCGGCAACACGACCCATGCTACATT
TCCCCCCATAATACAACCTATGTTACAAAAAAGAACACACAATAAAACTTATGTCGCAAA
AAGACCCGCAATATAAGCTCCGTTGCAAATATTCCCGCAACAAGACCTTTGTCGCAATGT
ATAGAAATACATATGGTTGATTGATTGTATCAAATCCAATGGCTTGCTATGCGGCAAATC
TTTTGAATAAATCCGCCGACCGACGCGTAGCAGTCTTCTATATTTTTTGTCACATACCTT
TAGGTTTTAATTACACTTTTGGAGAACACATTGGCCCTATTTGAATCCATGGGTTAAAGT
TAGTTTGGGTTAGTTTGGATTCAACTAATCCAAAAACATCTAAACATAAGGGTTAGTTTT
GGTTAGATGCATCTAACCCATCAAAAAAAAAATTAAACCGATGGAGAGATGCTTATTTGG
GTTAAAGTTAGGTGGGGCCCAGAAAAAAAGTTATTTTTTCCCTCTACTTTCACCATACCA
AATCCTGGTTAAATGAGTCAAATGATTAAAAAAAATGCATTTATTGTCAATCTAATTTTA
TCATCCAAATACTTCTTTGTTTAAAGTTAGTTCAAAATTAATCCAGAGTCAGAATTACCT
CTAACTGAATTAAAGTATCCAAAGAGGCACATTATGGAGTGACTAGTCGTGTGAAAGTAT
GTTTTGAGGGGTCTTTTGGCACAAAATAATACCATCACTGACGCGGCTGCAACACGTGTC
GTCCTCTGGTTCGTCCCCTATACGTGGAAGCCGGATGGGTCCCGACCCGAAGCCAGTCTC
CACGGAAGCAACGACCACGGCAAGCAAAACGTCCCGGAGCTCGCGAGATCTCGACGGCCG
CAACCACACACACCAGCACGCCCAGACACGAGAGACCAGACCCACCCCGCTTCACCGATC
GCCGGCGGGAAAGCCAAAGCCCCGCGCGGCTCGCGCGAACCAGACGCGGCCACGGCACCA
CCGGCCGCCGCCGCGGCCAAGGGGAAAGGCTCCTCGACGTCACCGCCGTCGCCGCCGCCG
AGGTCCTATCGCGCCACCGCCGCCGTCGCGATGGCCGCGTCCGTCCTCGCGCTCGCCGTG
GCGCTGCTCCTCGGCGCCAGCTCCCGGGTCGACCACGGTGCGGCCGCCGCCCCCGTATCG
GAAGAGGGGCTCCAGGTCCGCTTCCCAGATCTTAAGATCTGCCAAACGATTGGAATTTAT
GCGAGGAACTGGGTTTGATCTGCGTCTGGGTGGCCTTGCAGGTGACCTACGGGAGCACGG
TGAAGCTGATGCACGAGAAGACCAAGGTGAGGCTTCACTCCCACGACGTGGCCTACGGCT
CCGGCAGCGGCCAGCAGTCCGTCACCGGCTTCCCCGAGATCGACGACTCCAATAGCTACT
GGGTGGGGTGCCTCTCCGTCTCTCATGGTTTCATTTCGCGCAATTGCCCCCATCTTCCAA
GTTCGTGTCAAACCATGGTCTTGAATTGATAATGCCAGCGTTGGCTCTTCGTTCAGAGTG
CAAATGCTGTACCCGCATTGATTGAAATCAGGGTGCAGATGTGCATGTCATATCAAAGAA
ACAGAGGAATGGTATAGAGAATGACAAAAATTGTAAGGTCTGGATGTAGAAAAACGAATC
ATTAGGCATCAGTTGTTCACCTGCCATTTACTTTTCTCCGAACCGTACAAATTTCGCACT
TTGATTCGTCGGATAATTATGTGACATCTCACTAAACAGATGGATAAATGACGACATTAG
CATGATGAAACTCCAACGTTGACACTGCAATACTGCTAGTTTTTTTTTTTTCATTCTCGA
ATCGGAAGTCCCAACCTAATGATATTTTGTGGCTAAAGATTTGGCAGTTAACCTTGATAT
TAATATGATTTGCCTTTCAAGTAGTCTGATACTCCACCCCGAAGTAGGCAGGGTTAGAAC
ATGCTGTTCATGTTCAACATCTAGGCTTGACTTTGCTTGTACTCCTGCAGATTGTGAGAC
CTACTCTTGATTCATCAGCCAAACAAGGTGAGGCTATTGAAACTGGTAGCATCATCAGGT
TGCAACACATGAGGACACGGAGATGGTTACATAGCCACTTGCATGCTTCACCGTTATCTG
GTAACCTAGAGGTTAGTGTGATACGTAGTAAGTTAGTTTCGATACGTTGAAGAACCTGTA
AACATTAATTTATTAAATATATTTTGCTCTCTAGAAATGAATATTTGTGCATTATGTGAT
TCCCAGTAGCCATCATGAAATGAAAATTTGTGCATTATGAAATGAATATTTTGCTCTCTA
TGGTCAGGAGTAAAGCTTTTGCGATTAGACTATAAGATTTTTTCCCTAACCGCTCCCAAT
GCATCATATCTAAATCTATATTATATACACTAAATAAGCATTTATATACAACTCTCATAC
ACTTTGTGTCTAAAGGGTTCATATTTCATATGATTTGTAATTAATGGTAGAATCCCAATT
ATGTGGCATGTGGCCGCACAAACCATTGTTGAGCCTAATCAAGCACAACTGTGTTACCCA
GATGTTAATATTGTAAGTAGTACTAGCAAATCAAAATTAACTGAAAAAAATCCACACTCA
CAAAGCTTATTCATGAAGATCTCTGAACTGGACATTCACCACAAGCAATTTGATCACTCA
TTTTAGTGAAGCATTAAGCCCAGCCACGAGAATCATCCACATAGCAATTTGATTCACACA
ATCTACAGATATATGTTGCTTACAAGTTAAAACCTTCTTATTTACCAATGATTCATGGTA
AATCTGTGTACGTTATACTATCTAGAACATGTTCTGCAAATACACGGCCAAACTGGGATT
AATTTTCCTAATTCCTTGGTGGCTGGAACATCTTCTGCAAATCAATTTCATAAATTAACT
CACAGTGCACAAATAACCCACTTATATTACATTCCCGAAACAACAAGCACGGAGGCAGTA
CATTCAACCGGAGCATGTATGTAACTCACAGTGAGCAGGATGAAGGCCTCCATTGGCTTC
TTCAGTTAGCAATCATGCACCAGCACTCGTAGCACAAATGATGAAGGATGGTCGGGGTTC
GGGAAGGAGGGGGTGGGATTTGGGGCATACAGGATCAGAACAGCATTTAGGTTAGAGGAA
TGCCTGGTCAGGGCTTGGCTGTGGCCCGAACTGACGACTTTGGTAGCATCGGTGGTGGCA
GACAGCCCGAGATGTCAGTAGGCTAGGCAACGACATGTGAATGTGTTGGGAAGGGAGACG
GTGAGGATGCAGCGGAGAACAAGATGGGTGGGGATGGAGGACTGCGGCGTGAGGCAGGAG
GACGGCTTTGTAGTTTCCTGGCTAGGCATAGCAGCACCTGAGAAGAGAAACTTATATCTT
GCATTATATGGTGAGCACCCTGTCTCTATTTTTCTCATCTCGCCCTATCCATGGTAGGTG
GATAAATAACACATGTTGTCATGCACACGGTGTCCTTGGTCACAAAGAAAGAAGTTGTTG
CCCATGTTCTTGAATCAAGTGACTGACAATGTCTACAATAACTTGCAACTGCCAAGCCCA
ATGCCACCAGGCTATCTTTTAGCAGCTTGTATTGTGTGTCATGTAATTGCTGTTGTACCG
AAGCTTGGGCACTCTAAATCTTATCCGTAGGCCCAGGGGCAACCATCTTTGTAACTTTGA
ATAGACTTATCACTAGGAACTCATGTGGACAATTCTTTGCTGTGCGCAAAGACGTTTTGT
TTTACTATATGTTTCTTTTGCTTAATTTTTTATTGAATTAAGTATGCACCCTAAATCTTG
AATGAACTTACAGGTGAGCTGTTTTGGTGGTGATGGACAATCAGATACCGGTGACTATTG
GAGGTGTGATTGCTTAAAATATGTGATGCATGCTGCCTATTTGGTTGCCTAACTTAATCC
AGCTTAATGGCTTGCTTTTCATATTATACAGGCTAGAAATTGAGGGAAAGGACAAGGTAT
GGAAGCGAGATCAGAAGGTAAGATTGCGTCATGTTGACACGGGAGGCTATCTGCACAGCC
ATAACAAGAAGTATAACAGGCTTGGTGGTGGGCAGCAAGAGGTGAGTGTGATAATAGTTA
GAACCTACAAGTACAACCTTGTTCCGACATATATTAACGTTATATACCAATGTGATTGGG
TAATGCATGTTTAGAAACTACAGCTATTAATGCTAAGAAATAATAAAATTGAATTACATG
CGGTATGCGGCAATGTCAACATGCACTGTTTGTTCAAGAACTCTAGTCCTTGATCTTTAG
AACATCAAGGAAATTTATTTTATATCTATAAAATGAGATGTCACTGAAACATCACAACCT
GTTTACCTTTAATTAGTTAATTCTAAATCATTATACATACTCCCTCTAATCCATATTAAT
TGACGCAAAGCTCACGTCTATGAAGGCAAATGTCGTACTGCCTGAATTCATAGCAAATAC
TCCCTCCATCCCAAAATAAGGGTCTCAACCTTAGTACAATTTTATACTCCCTCCATTCCA
CAATGTACTGCGTCTGTTCTTCTCGAGATCTAAGTTTCACCATACATTTAAGTAACCAAC
GAGACCGACTGCGGCGGTAGCAGAAATTATTCCACTGAATTCTTAGATCTTGGGAAGCGC
GGGCACACTACATTGTGGAATTGAGAGAGTACTAAAGTTAGTATAAAGTTGAGACACTTA
TTTTGGGATGGATGGAGTACTATAAAACAAGACCACATTCTAGTTCAGTTAATGCAACCT
TGGTTTGCTTATGTATTGTTTAACTCATCAGTTTTCTGAGTTAAAACATTCTTCATGCAG
GTCTGTGGTGTTCGAGACAAGCGAGCTGAGAATATTTGGTCGACAGCGGAGGGCGTTTAT
CTCCCAGTCGATGAAAGAAAGTGAACATAGCATCAGGAATTTTGTTGACATTTTCCATTT
TTTTATCTGTTCGTGCTTTTAAATTAAACAAGGGATATAGTACCCAGAACTAGAATGATT
GTTAGCGCAGTATTTTTCTATTTGGAAACGACGATTACAACTTAGTCGTACACCATCCAT
CACCACACACGCGGCTAACATGGTGAGTGCGACTCTGTCAGCATCATCACCCTGAACTAA
CTTGGGCCTTGGATGCTTGAACCCCTGGGACAGTAAAGACTTTGTGTGAGTATCTACAAC
TCTACTTTATTCGGGGGTAAATTGAAGAGGTTGTGCAACGATGCTGCTTCTCTATTGTCA
AAAAACTGTTTACAATGCAAACAGAGTAGAGCGATACCAGGGAATTACAGGTAGTTGAGT
ATCCGTGCTGACCGTAAACAAAAAGAATCGAACATATAAAGGACAGGACGCTAGGCTAGC
TAGACGTCTATATATCACGTTGCTATTTACCTCTTCAAGCATTTGTCCTATTTTCATTTT
GATACATGGCGCTTTTTGTTTGCTGAAAATACATATGACACACTTGTGGGCCCACACAAG
GTTTCTTTTTTATTTATTTTCCAATTTCATGTTCATTTTTTGATATTGTTTATCCGGTTT
GAAAAAAGAAATGTAAGAAAATATTACAGCTGCCATAAATATAAAGAAAGTGCTAGTGCA
TTTTTGAAAAATACGTATTTTCAAAAATTCTCGTGTATATTAAGAAATTGTAGATGTCTT
TTTGAAACATGTTCATCATGTATTCATAGAATTGACAAAAATCCATTTAAAAAAAAGCTC
AACATATATTAATTTTTTTCTGCAAATCTGGCATTTCTGCAAACTCGATTTGACATGTTT
TAACACATTTATAAAATTACAGTTTTTACAAAATGATTTTTAATACACGGTGAACAGTTT
TTAAAAATGTGCGCACCAATGATGTATAATATGAGATTTGAACCGTATTTGCAACTTCAT
GCCAAGTTATAGAACCAATTTGATGTATTTTTCAAGTAGTGAACATCAATGACAAGTTTA
AGCATCACCAGCAGTGTATTTACAAAGAATTAACCAATAATTCTTCATTATTATGGTTGG
GTTGTGCATGCTAGGCGAGCCATGAAGAAGGTGGTCCAATCTATCTCCATGCAGACGACA
TTTTTAGAGATGAAGCCAGAAGAAGATATGTTGTCCACCTCTTGCATCGTCCCAGTTTGG
AGATTGACAATGTAGCCGTGGCGGTGTGCGAGGACGATGAGGAGCTTGCCGTTGCCGCAC
CTCCCTCCCAGCCAAACATATGGAACTCGTTGAGGCTGCTCCAGCATTGCTTTTAGTTTT
AGTTTTAGGTCGATCACCCCGGTGCGCGTCCAGCGGCAGTCTTGTCCATGGCCTGCTGCA
GCTGGTTGTGTCCAGATCTCCATCAGCTGGAGGCCTGCGTCATACAAGCAAAGCGACAAG
AGCTTTCCATCGGTGGTGGTAGCAAGGCGCGTCCGGCCGCGCTTGGCAATGAGATCGGCA
CGGTCGACAAGGGGCCGAGGGCTCATGGGGCTCGTCAGCTTGGTCGAGGAGACGCGGCCG
GTCTCGGCGTCGACGTGAAGGACGTGGAAGCTGGAGGACGCACAGAAGAGCCAATGGGCT
GCACCCTGGCACACGACGGCGTCACTGTGCATCAGGATCCCCAGCGCCGCCCTCCTTATG
CACTTGGTAGGCGCGTTCCAGCTCGGCTGGCCAGCCACCAAGGTGTGGAGGTCGTAGTCT
GTCTCCTTGTCCAAGTCTGTTGCTACCATCATCAGCACTTTGAACGATGGCCGGCAGCCT
GCACTGGTCAGAACGGCACCACCTTTGTAGTCCGCACTGGTTAGAACGGCGTGACCTGCC
CAGTACATATACCGTTCCAATGGAGGCAGCACGTCGCATGTGCCTGCGAGCAGGCTGCAC
ACGGCCAGCGGGACGCCGCCGATCTGCCCGGGGCTGTAGTTCAGGACTGTCAAGAGGACG
AGGCCGCCGTGCGACGTTAGCGGACACACGTAGTCGGCGGGAAGGCCGGCGGCGTCGGTG
ACAAAGGAGCTGAGCAAGCGGCGACCCGCCGCTAGGGCCGATCTCGGAGTCGGACCCGGG
AGGAAGGAGGCGTCGTCTCCGCCGTTAAGCTTAAGCTCCTTGGGGACAAATGAGCCGAGG
AGGGAGTACGTGGGGTCCGGCCAGCGGCGGCGGAGAAAGGAGGGGTCGGCAACGAGGGCG
CGCCACCACCTGCACGTGGCTGCGCAGCGGAGGAGCGCGGGCGCGTCCGGCACGCGAGCG
AGGATCTCGAGGATGATGTCGTTGGTGAGCGTGTCCGCGGCCATCGACTTCTTTTTGGTT
GGTTCTCTTGTGAACTCACGGCCTCCCCTTCTTTGCGCTTATATAAGGTCAGGGACGGAC
TTGCGCACAGACACGTACAAACCCGAGTCCGAGCCTAACTTGACTGAGAGCAACTCTAAC
CACGCGACCCAAATGAACGTGAACGGATGATTTGGATCGCTGCGTTGGAGTTGCTCTAAC
TTACCTATCGGAACACGCGTACGTAGGAGTTTGTTTCCTATTCGGGAGAGGAAGTCGACT
CTGATCGTGTGGTCTAATGGATGCAGTTCAGAATTAGAAAATGTCTGAAAAAACTTTGAA
TCCATACTCATATAGTCTGAAAACGGCCCTGAACACTGAATCCCTGGAATCGTCACTGGT
ATGTCCTCTTCAATCCCAGCTTATCCCCGCCCTCTGCATGTTTGTGTGAGGTGGGATTGA
ATGCGTGGAGCAGAAGAGGGGAAAAAGACTGCCAGCGGAGATGGGCGGCTCCCCTCCGGC
GACCGAGTCCTGAAACTGCGCTGTGCGCGCTGACGGCGGCCGGCCGGCGTGCTGCCTGAG
CCCGATGCCCCGCTTCCCCCGCCGGGGGCGCCC
