morexGenes - Barley RNA-seq Database

Contig contig_1565632

Source Contig contig_1565632

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1565632 (5164 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1565632

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13428	1	843 bp	MLOC_13428.1	Available	Available	None
MLOC_13427	1	1325 bp	AK367504	Available	Available	None

CDS Structure of MLOC_13428

CDS Structure of MLOC_13427

Contig Sequence (5164 bp)

>contig_1565632 5164 assembly3_WGSMorex_rbca.fasta
TACAACGTTATTGCCCAACTCGGTGATACCGAAGTGAAACTCGGTGGCACCGACTAGTGC
AAAATGTGGCAATTTTTGTCTTTTCGATGAGACCGATATATAAATCTCAATGGTACCGAT
ATGGGTGTTATGGAAGTTTCCAAATCTTAGTGAGAACGATTTCCAAAACTCATAATTTTC
AATTCTTGAAAATGGCTAACCAGANNNNNNNNNNNNGATTTCGGTTGCACCGAATGGAAT
GTTGGTGGCACCGAGATGCCAGGGTTTGGCATAGGATCTGTCTGGTGGAAAACTCAGCAG
GGCCGAACGGAAAGTTTGTGGCACTGAATTTTGGATTTTGCGGATTTTGACAAAATATTT
GTGGAAGAATTTCATGAGTACTTTTCGTGGCTATCTCTAAGCACTTGNNNNNNNAGATCA
TCATAGTCACCTCATCCCCTTTTAATAGTACTGACTTTTCTATGGACTCAAATGTGATTT
CTCACGAAATGTAAAATGTAGAGTCTTCAAGCTTGTTGCCAATAGATGTTGCTTGCATCT
AGGGGTTCTCCTCACAATCCTTAGCCATTGCATCATCGAACTTTTCCTGAAATATACTAG
ATAGAATCATTAGATCAATGACACATATGTTGTTATTAATTACCAAAACCACTTTAGGGA
GAAGTTGTGCTTTCACCAGCACCATGTAGCCCCTCTGTCGTCGCCCTTCACGTGGATATG
AGCATCCAGCTCGCCGTCCGATGCCTGGATTCGGTTCCCCTAGACGCCCCGCGCCCGTTC
CCAGCCACCCCGACCTCGCCTGCCTCGCATGCCCGTCGCCCTCGCCAGAGCTTGAACTAC
CGTCACTTCCGTGTGTGTGGCAAATGGTCATGGAAGCACAATGAAAATGAAGATGCGCGT
GTGTGTACCATGTCTTTCATGTCGAGTCCGCTTACGAGACGTCACTCGATGCTCCCAAGG
GTGGCACAAAAACTTGTTGCACTCATGTTGTATCACCCTCCAATGCTTTGAGACGGACAC
CCACCCGCGCTTGCTCTCCATTTGGTATGGTGCAAACTTCTTGCGTTCATGGAATTCGCG
ATGAATAGTAGCCAAAAGGCAGATGCCTTTTGCTCGACGCCGATCTTGGGGTCTTGTTCA
ATGTCTCTCCAACATTCACAAATGAGCTTGCCTTCATCGTTTGTGTATGCCTTCTCCCAC
TTGCTTTTGCGCTTCTTGTTTGCATTGCCTTGATTGGAAAGCTCGTCTATGAACAAAGCC
GCTCCATCGTTGTCCACTTCGTCTTCTTCTTCTAAGTCATAGTCCTCCAGTAACTCATGG
ACGATTGGGAAGGTACCATCAATGCCATCTTGGCCTTGCATTAAGGGGTCGACCATGCCA
CCATGCTCAAAGGTGTCAGACATGAAAGGGTTTTAGTCTTCTTGGCTTTGCGTCTCCTGG
GGATAGAAGGCAGCGACACTCGCACCACCTTTGAAGATGATGTTCTCAATGATGAAACGG
TTGTCAGTCGTCGTCCGTGGCTAGCATTCTATCAAACATGTTGCGAACACCCGGAAGCAT
GCCAGCTGGGGGCTCCTGTGGGCGTTTCCGTTGACCTCCGAGGATGATCCACCTGCCATA
CGTGTGAAGTTGATATCAATGGCCATGGACGCAAGCGTGGCCGACGCCACCATGCTCACA
TTCGACGAGCATTCCCTAGAGAAACGAGAGGCTTGCAAATAAGGATGGAAACCGACAATT
GATGGCGTGGTAGACGTGCACGACGACTCTGGTAGTGCCACACGAGGAAAGACCATTGAG
CTCGTGCTGGTCGTGGCCACGACGGCGGCGTTGTTTAGCCTGTGCTGACTAGGGTTTCAC
CTAATGTAGATCAACGCCTTCCTCGTCGCCGCAACGACTTTGACATTGGTTTTCTCTTGC
TGTGCAGAGGTGGCCATGGCAGCGACGGATTCGTCTTCGAGCTTGCATTCCTGTGCATGC
CTCTGCTCCTTCCTCTTAGCCGACTGCACGGGTCACTCCTTCAGCGTCACCTTCTACTTG
GGCGCCGACATCTTGCGGGCGGCGGGGGCTTCCCGTTAGAGGTGACGACGCATGCGAAGC
TGAAGAAGGCTAGGGAGGCTAGTTCGGCGACAATGTCGAGGGTGGGCGCATCATCGTTCA
TGGCGAGCGGCATGGAACTCGAGCGGGCGGGAGTATTTTGGGAAAAGGGGAGGGATTGTG
TGACTGTGCGTCGACGAGCGAACCATGAAAATGAGTACGCGAGCGTTGCGTGCGTCGACG
AGCGAACCATGAAAATGAGTACTCGAGCGTTGCGTGCGTTGCCCAAGGTTTAAATTTGAA
TCGAGAATAAGTGATACAGCGAAAAAAAAACTTTTGTGCATCCGTTTGGATTCGTAAGTG
GTTCGACTTTTATGTTCGTTTCCATCAAAAAACGAGCGCACACGATCAGATTTTTATGTT
CGTTTTCACTAAAACGGACACAACGGAGCGAATCTTGGTGTGACCTACCACAGCCCCAAT
CCCGGCTCAATAAAAATCTTCCCCGAGCTGCTGCCGAGCGTCGCCGCCGACGCCTCACGG
CCGAAACCCTAACCCCTCTCACGCGCGTCGCCGCTACCATCGCCGTTCCCATTCCACCTC
GTCACGTCCCTGCCGTATACACCCCGTCCGAAACCTTGGGCATTGGTTTCTGAAGGTACG
AGCGTTTGGATCATCCAGCGATTACTTAATCCCAAGCTAACTATTCTCCAAAAATTGCCA
TCTAGATCCGCTTTTGGTTTGGTGGCAGAGGTGGATTTACATTGGTTCGATGTTCATTTT
CTGTGCTGCTTTCAGGCCATCAGGATACCTAGCATCATCATGTCAGGAAGAGATCGCCTG
CCGCGCCGTTTTGTCGAAGATGGAAGGGGCTATGTTGACCCCCGTGTGGCTGAGGATCGC
AGGGGTCATCATCCTGGTATCCGTGTGGTTGATGATCGTAGGGGCCATCATGAGATCCGT
GTAGTCGAAGATTGCAGAGCCTATCCTGCAGTTCGTGTGATTGAGGATCGTAGAGCTTAC
CCTGAGATTCACGAAAGGCCGCTCGTGAGGGTGGCTCGCTCTCACCCGGATGCTCTAGAG
GAAGAAATTCAGTTGCACGAGGTTGAATTCCGCAGGCTTATGGCTGATCGTCATGCTTTA
GCTGAGGAACGAATGGAGTTGCACAGGGAGTTGCAAGCTGGAAAGGAGGAGGTCCGTCAC
CTGAACTTGATCATCGCAGAGATTAATGTCAAGAAGGAAGCTTATATCAGCGAGCTCGTT
GACAAGAGAAGGAAGCTTGAAGCTGAACTTAGATCAAATGAGCCTTTGAGAGATGAGGTT
ATGCATCTTCGTGGTGAAATAGAGAAGCTCCTTGCTGTTAGGAAAGAACTCTCTGCAAAG
GCTGCATCACTCATGCAGGAGCTGAGTAGGGAGAGATCTGATAAACAACAGTTACCTATT
TTGAAAGCAGAGATTGAGGGCCTTCAACTGGAACTTACTCATGCAAGGTACGCACACCAT
CTCTTTATCTGGACTTGACTCTCAGTTATCCCAGTAAATAGTTTGGGGACTGGAAACTTC
GAGTATCATTGGTTTCTGTGATTGTATTATTTGCAGGAATACATGTGAGTTGGAGCAGAA
GGGGAACTTTGAGTTGGTGGAACAAAGGAAAGCAATGGAGAAGAGTATGATTTCGATGGC
ACAAGAAATTCAACAAATGCGGGCCGAATTAGCTAGTTTTGATGGCAGACCATGGGGCAC
AGGTATGTTATTGGGATCGCCTACAGTGTTTGTAAATTTCAGTTATCCATTCTACATAGT
TCCCTTTTTCCAGTGACATATTTTTCTGGATTTAAAATTGTACATGCGCGGTATGGTAGG
GTTGAGTATTATCAGCAATCCTGAGTTAGGAGTCTGCTATCTGCCAGCACTTTGCATGTG
TTTCTAAGAAACAGGACAGCAGACATACTTCTTTTGTTTGTTACGACTAAAGGATATGCT
AGTTGTCAATTAATATTGGAAACACATTGATGCTACTACTGAACATATTATGTGTGGCGT
TGTGAACTTTTGACACGTTGCAAATAGTTGTCTGCCTTGGGGAGGGAGGGAGGGGGGCAG
CTTCTCTGCTTGGCGTGATCGGTGCTATCTGCTATGGGAAATTCAGGATGACAAAGATGG
TGCTTGTGTGCCACTGTTGCAAATGAGACGGGGGGAGGGCAAAAGGCCATTCTATTTTCT
TCCTTGCCCTATGTTGATAGATTGCCTGCTTTACAATGGGGATAGATTGCAACACAGGTG
ATATGATATACCGTGTCGAATATGTCTTATACTTTAATGCTTTCTTAATTCGCACATTCA
CTACCTCGTAATATAGGCACACACTCATTTAAATTCAAAAGGCCTAACTCCTGGGCAGGG
CTAGGAAAGTTGTAGCCATCTTGGACTCATTTAAGCCGCTGACTATCACATGGTCCGGGG
TCTAACTCTATGCGGCAGTTTCTTATGCCCACTGACTACTACCCTACGTTGAAATGGCTC
CCAATATATAGGGAATTTTGAGTTGAAATGTGTTGATTTACGATTGGTTATTTTCAGTTT
GAGCAAGATCTTCCACATTTCCATTTTTAATAGAAATTTGTTTTTTTTATATCTGACAAG
GTGATATTTACATTATAACTACATACAGTCTTTCTGGGTACGTGGAGGTTCTTCAGTCCA
TATGCTGGACCCTTTTCGAGTTTGCCAGTCTTTCTGGGTATACAAATTTTAAGAAGAGTT
TTATACTTAGTATGTGTCCAAAATGCATGTGTGGATGTTTTCTCTTTACTGCTGGTATGG
AAGGAAATCATGTTATTTTCTGTTAGTAGGATATTATCAGGTATCCTGCAGCTCACCTAC
ATGCTTTAAAAACTAATGAGACCAAGGGCATTAGCACCCCCGACACACTAATAAGAAGAC
AGCATGTTAAATATCAGCCTCACGAAATGAATCAATGAGATTTAATCTGGCCACAACCTG
ATCTTTTAGCAGTTGACCTTCTACCTTCCTCAACATTTACTTTGTACTCCCTCCGTCCTA
AAATAAGTGACTCAAAAGTGACTCAACTTTGTACTAATTTTAGTACAAAGTTGAGTCACT
TTTG