Contig Data
morexGenes
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Map Locations of contig_1565581 (3816 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1565581

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13414 1 599 bp MLOC_13414.1 Available Available LOC_Os01g47410.2, FRAME:+3, EVALUE:5e-41, 13101.m04889 protein aspartic proteinase oryzasin-1 precursor, putative, expressed





CDS Structure of MLOC_13414






Contig Sequence (3816 bp)

>contig_1565581 3816 assembly3_WGSMorex_rbca.fasta
GCTATATGCATTAATCGATGCAGAGGTCTGGGCCTAGCCTCCTTTTCAAAAAAAAAAGTA
TATGGCCCCGAAAAAGGTTACTTAGATGCAACAGAAACAAAGAGCAAGTAGTAATAATTC
TTAATACTAGTAAACTGCACGTACTTTGCACGTCGGTGATCATGCAAGAAAAAAATAAAC
CAAAAAAAGGTAACCATTTCATTTCCCTCAACGAAGAAAGGCAACCCATTCCAATTTTCA
GACCCATTGCTTCTTACGCATGTATAAGTTTAGTCATTAGAAACAAGTGTAATCGATTCT
ACCATACAACATAAGCGGGAAACCTTAACTGCAGTTGGAATTAACTCGAGTGATCACAGA
TCAAAACCAATAACCAAACATCACACCATATAGCTATTGTTATTTGTGGACTAAACTTGC
TCACATGGTTGATTTTATCGCTTCTACACAATTGTTTTATATATACAATAGTAAAGGCAG
AGACTTACACCACTTTTATGTTTCTGGAGTCGACAAAGTAGTATATATATGCTAATGCCA
AAAGGAAGTTGGTACTTATTATTAATGTCATCTAAAGCGTGGCTTCTTAGAGCTAAGCAT
GAGCCTTCATTTCAAGTTCATGATCCAGAATGGCAGATGTTCCAGTCAACCCTACCTACA
ATTCTTGAGTTCGCAATCCAGAAAGTTAATTAGAATGTTTGTGCACGCTCAGCCAGGGAT
TTCCACAACCTAAGATAAGAAAAAGGAAGAAATTAGATAAGCAAACCAACCAAATAACTC
AAATTAACGCAATGCAGCTAATACAGAATCTCATTATACATATAGAGTACTAATGGCATG
AGGCAGAACATAATCTGTAGTGATAGCTTATTCGTTATAAACAAAAAAACTGGAGGGTCT
TTTGGAGCAATCGAAGATGAAGTAGGAGCACACTTATTTCATGCTGGAGACTGAGGTGGC
TATAGATTGGTGCGGCATGTAGTTACAGTTCCTATGGTGAAACTCTACTGGGACGGGGAA
TAGTAGAAAAGCTCGTCCAATTGCACCTGTCAGAGATGCCCATATGGGTTCAGAATTTTG
AAATAGATGAGAGAAACTGACAATACAACCACATGCCAATTGCAAACAGAGAATCAAATG
CCAATTGCAAACAAAATAAAAATCAGCCACAAAATCCAAAAAAGTAAGCATCTTCAACCA
TCTCTAATTATAATATGCTCATGGAGATGCCAGCTTACAACATGTTCATGAATTTACATT
CGTGTACTACTACAACCTGCCCGGTAGTCATTTCTAGTGTTCACTGCCCTTGTCCAGGAA
TGCTGCTATCCGCCTACATTGACCAATACTCGTTGGTTCATTACATGATGTAGGTATATG
TCAGATGGATTGATCAAGGTCTGATTCTCAGTAACTGAAATAATTATGTCGTTTTGAACG
ATATTTTAAGCTGGAGAACAGTTTAAATTTCCAACAACGGCCACTGTGTTCCCAAGACAG
AAAAAAAGCATACATGCTACTGATTAAACAAAAGTAGATACTGATAAAACGACCGCATGC
TACTGATTAACTATTTTATCTACGTTGTTCTACGTATCAATCTGCTCAAGGGGATATTTC
CTAGATGGACTAGGGGGATGCTGGAAGCTCCGCCGTTGATTTACTACTAGTTCTTTCCCA
CGGACTGGAGACCCGGTAAGAATCGGAAACCATGGCGATGCATGTCCGAGGCCAAGAAAT
GTTTGTTGCAAATTTTGGCATAATGTGCGATAAAGATGCTTTTACCCCCTCCCTTAGTTT
TGCCTTTTAAGCAAAGCCTGCATGCATGCAGTAGCACGCAGCCGGCTCAAACTGAAACTG
AAGCGGCAGATGAGTGGCCACGTACGTACGATCGAGACGTGATCAAGTGAAGCACGCTTG
GTCCCATCTCCAAAAACAAATAAGCCCAAGGCGTGATCAGCTACAATATTTGTTTGTTGT
TGTTGCTGCTTCTGTTGTTGGAGCATTGCGCTTTTGCACAACAACTGACTCTTATCATCT
TATGTTTCTTCTCACGCTTTGTGCTCCACGAAACAAACAACCTAGCTACATTTGGTTTCT
TCTTGCGAATGGCACAAACTATACAAAGCCTTTTTCTTGCGTGAACACAACCGTGGTACT
CACCATGCATGCGACATATTCCGGTACCACAAAGCCCCTGGCGTCCTGATCCAACGGCTC
ACAGGAGGATCCAACGGTGAGGGTGACCACGTACGTAGCTCCGTTCCAGCCACCGGCCGA
CTCCATAAATCGAGCCCCAGGGCGAACCATTCTTCTCAAGCTCCTTCCCCGGACAGGACA
CCACCGATCCTGGTTGGCAACCATGGCAGCCGCTGGCCACCTCATCCTCCTGTCATGCGT
GCTCCTTCACGCCCTCCTCGCCGGTCCGGCGGAGGGTCTGGTCCGTGTCGCGCTGACGAA
GCGGCCTGCGGACGAGGACGGACGCGTCGTCGCCGGGGAGGACGCGCAGCGCCTCCTCGC
GTGGCGGCACGGCCTCGTCTACAACTCCGCCGCCGACGTGCCCAAAGAAGGCGCGGAGGG
CCACGTCGTGGCGCTTAAGAACCACCTCAACGCCCAGTACTACGGCGAGATCGCCATCGG
GACGCCGCCGCAGAACTTCACCGTCATCTTCGACACGGGCAGCGCCGAGTTCTGGGTGCC
CTCCTCCAAGTGCTTTCTCTCGGTGCGTAGCGTAGTACTCCGTTCGTCCTAAAATTCTTG
TCTTAGATTTGTTTAAATATGAATGTATCTAGTTAAATTTTAGTATTTAGATACATTTAT
TTTTAGGTAAAGCTAAGACAAAAATTTTAAGACGGAGGAAGTATTTGGCTTGCTTAGGAT
TTAGGGTGGGTTGTACACATTTTTGGTTACTTACGCTACTAATAAATTTGCTGCAGATTG
CATGCTACCTCCATGCGAGCTACAAGGCCAGCAAGTCCACCACTTACAAGAAGAACGGTT
TGTGTCTTCTAATACTCTCTCTGTTTCAAAACAAGTGAGTCGACTTTGTACTGACAGAGG
GAGTAGTAATTAATCTGATCATTTCCAATCAGTAGAGTTTTGTGGTGACAGTAGACTTTG
CCACTGTTTGCATATATTCCTAAGAAAGTACAACGCTTTCCTCTTTCGTAAAAAAAATTC
TCGAGAGTACGCCAATAGCGTATCATATCTTTATAGGAGACATAATAGCGTTTACAAGAC
GCCAATTGGAATGCGAACATTTTCATTGGGTACACCAACACCAACAAATACAATCAAAGC
TACTCTCTCACAAAAGGATCTAATCCTCCTCCACCAAAGCCTGCAAAAGTTTCCACTCCT
TGATTTCACTCAGGACAAGAGGGGTCAGTTGTGCTGGTGATTTCTGCTTGTTGATCCTGT
TGAAAACTCTTGCATTTCTTTGTTTCCAAATCACCCAAGCAGTCCCGATGACGAATGAGT
CAAAACCCCTGCGGATCTTTCCTGAGAATAGCTTCCTCTCAACAAACCACCAGTCTCTAA
ACGCGCCAGCGGGGCGGTAGCGGAACATTAAGGTGTTAGGAATAATCCCGTAGGATTCAT
ATGACTGGATCTTATGCCTAGCAATTAGACCACCTAAACAATGGAAGTGAGAGATTGGTT
CTTACCGCCAATGGTTGACGCCATTGGTGTAGGCGATGCGATGTTCCATGCCTGCTCGAT
GCAGGCGTGATGCAGGCTCGAGGTAGACGGTCGTGGCGGGAAGCGGCGTCCCTCCGGGCG
CCACCGGCACTGCCCTGGAACAGGGACAGAGCTTGG