Map Locations of contig_1565402 (7815 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1565402

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13338 1 361 bp AK362785 Available Available None





CDS Structure of MLOC_13338






Contig Sequence (7815 bp)

>contig_1565402 7815 assembly3_WGSMorex_rbca.fasta
CCCGGGCTCGCAGTCGCACCTGTACCCCGGCAGCCCCGTCGTCACCGTGCAGTTCCCCTT
CCCGCAGGCCACCGCCTTGCATAGCGACCCTGCTCACCTCGGCCACACAACTCCAGGTTA
GAAACCACGGCCAAGCTCGTAATTAACACCGCCGGCGGCGTTGGGAGGGGCGGGGGGGAG
AAGTGCGCGAGGAGACTTACCCATGACGGGGGCGAGGAGGGGGCTGAGAGGGGAGAAGAA
GTCGGCGGCGGCAGGCCTGGCGGTGATGGCCAGGAGGAGGAGGAAGAGGAGCAGGGCGGC
GCCGCCGGCGAGCCGTCTCATCTTGGTTTCTTGATTTCTCTCTGGACTCTGCTGCAACCA
CTAGTGCTACTGCTTTGCTGCTGCCCGTTGGTGTTTCCGGTCTCTGCGCCCCCCCCGTGT
GTGTGGGCGGTTGTGATGATGGAGCTTAAAGAGGCGGATGGATGCGTACGGTTAGTTGGT
AGGGAGATGATGAGGTTTTATGGGGGCTTCCAATATTGACTTGGCAGCGAGGAGCCAGGC
AAAGTCAAGGTAGGTTCCGTTTGAGATGGCGCTCCTCGATACTTTTCAAATCTATTGTCT
TTTTTTTCCCACAAACTATTGTCCAAATTACTGACTATAGGTAACTCGATGGATATAGAA
ATAGTTTTGTTAGAGCATCTCCGGCGGTGATCCATAAATTTCTTCTCGCATCCGTCCGCG
GACTGGGGACAGTCTACCCACATGGATGTGGGAGGACGACATCCAATGTAATCTTCGTTA
GTAAATTTAAATTTAAATATACTCCTATCCGATCCATACAGCACGCCACGTGTCGGATTG
CATGCCCAATCACATCAAAATGAAGCAAATATGCTTAGTTTTTACACGTCCAATTCCGAA
AGAACGTAAGTCCGATAATCCGTGCACGTGAACTGCACTGTGGATCCACTTCGTGAGGAA
AACACGAAGAGGCAATTGAGGCGATTGTGTGGCCACCGTCATCGAGAGTTAGGGTTAGGG
TTTTCGCACGGTGGTGGTGAGGATTTCGGTGGTGTGCTAAGGGGCGACAACGCACCCTAG
TGTGCAGATCGGTGTGCTTCTCCTCTTGTCTGTGGGGAGCCATGGCAGAGAGGATGAGGA
ACAAAGAGACGGCGTCGAAGAGATCAGCGACAACATCTAAGGCGGCGGCGGCGGGATCGG
AGGCACATGCGAGAAAGGAAGCTTCAGGAGACAAGTCACTGTTGGGCAGACAGAGAAGAA
ACTCATCGCAGTCTCCGGCGAAAGGCAATGTGTCGTCTGAGGCAGCAGGGATGACTGCGC
GTCTCGGGGGGTCTTGTGTTGATATAGAAGGAAACCACTGGGTTTGTCTTCAAGGAATCG
GGACATGACCAATCTGGGCGAGCGAAGTGGTCTGTGATTGGGAAAACCTTTTCTCCAAGG
CCAATGAACATGCGTGTGTTAGAGAGATCGATGCCAAAGGCATGGGGTCTACACCAGGAA
GCAAGATTCAAGATCATTGGGGCAGACATGTTCTTTGTGAATTTCGGCAGTGAAGGTGAT
TGGAAACATGTGCTAAACAACAGTCCATGGCAGTTTGATTTCCATGCTCTTGTGATTAAG
GACTACGATGGTGCAACGAGGCATTCTGAAGTGGCTGCGAGAAGATCTACAAAGGTTGAA
GATCTACCCCTGTACAAACGCTCCAAGGCGTTCGGTGAAGCAATGTGGAATTGGTTGCGA
GAAGTGGTACATGTAGATGTTGATAAAGATGGTTCTGCAAGGGGGTCGCACCTACACTTC
ATGGTGAAATTCTCAGTTTTTGAGCCGCTGATGAGAGGTTTCTATCTAAAAATACACGAT
GATGATCTGGAGAAAACATGGTTTGATTTCAAGTATGAAAAGATTCTGTACTTTTGCTTT
GAGTATGGACGTCTTGTGCATGGAACAGAAGGGTGCCTCCCTCCGGTGGACTCGGACCAG
CAATGCGGTGAATGGCTTAAGGCATCACAGGGGCACTCAGCGTCGATGAAGGGGTGGTCT
CACAAAGGGGCAACTAACAACGCTAACAGCTTCGGAAGTGTCAGACCTAGTGAGGGGACG
GAGAGCTGGAAAAGGACTAGATCAGTTAGGGACCTCCCAACAAAACACAATCTTAATGGG
GAGTTCAATAATCCTGCTGCCTCCTGCACTGGCGGGGGTGGCAGGATGGATCAAGAGGAT
GTCTCTAGCCCAAACAAGCCGCGAGACGGGCCGGCTGCATCAGAGGGCAAGGATCTCAAG
GAGGAACTGGGACAAAAAAGGGAGCGAGACATATGCTATGAACTGAGGCAGCTGCAGCTA
GGCTGACAAGCTAAGATAAGGTCGGGCTAAAAGCAACATGGCCCCCGAGATCTTCGTGGT
GGGGGATATGCAAGCATTTTTTCATAAAGAAAGAGGAAAAGAGGGTACTATGTGAGGAAG
CCAAGGTCGGGCAACATCGAAAGTCACTCGCCAAGGAGCCCGGCACAGGATATGGTCAGC
GAGAGAAAGAGAAGGCTGAAGCAATATTGGGTGGCTAAGGGGGATTCAGAAAGGCAAGTT
GGTAATGATGCATTCATTCACGACATGAGGCAGAAAATGTCTACAATGTTTGACCGCATC
ACAGAGCATCCTGACACATTAGCGGACCTTGCGAGGCAGGGCCGCCGGCCGCAATGAATC
TTCTGGCCTGGAACTGTCGAGGGATGGGGTTGGACTCGACAATCAGCGAATTATGAGACC
TGGTACGATCTCAGAACCCACCAATGGTGTTTTTATGTGAAAAATAAGAAGGCGCGAGCT
ATGGATATGATTAAATGGAGTCTTGTATTCACCAGTGGTGTCGCAGTGGATTGTGACGGT
AGGAGCGACGAACTAGCACTCTGGTGGAGAGATCATGCTCAGGTAATAGTGAGGTCATGG
AGTCAATATTTTATTGATGCACATGTTAGGATCGAGGGGAAGACTTGTAGAGTCACTGGA
TTCCATGGGGAACCGTAGAGGGATCTCCATAAAAAAACATGGGATGTCATGCGATATTTC
CGAGCACAAGTTGACCTTCCATGGATTTGTGTTGGTGATTTTAATGAGGCTATATGTTTT
AGACGGATCGCATGGGCGGCAATCTGAGGAGCTTCGTGCAGATCGAAGATTTTCGAGACT
GCCTCACCGACTGCGGTTTGGCACACCTTGGATTTTCAGGCTACCCCCTACACATGGGAT
AATAAACATGATGGGGCTTAAAACGGTTTGGTCCGACTCGATCGTGATACATGCAATGGA
GACTTCCTTACTTTATATCCTGAGACGTCGGTGGAGCATATTCTGACGGAAGAGTCTGAC
CATCAAGGCCTTCTTGTATGCGTGCTGGAGATGGCTCCACACCGCAGTCGAGGGGGAGAT
TGACAGTTTTGATATGAGGATGCATGGGCCAGGCATGAGCAGTACGAACATATGATTGCA
CAAGCATGGGAAGCAGCGGGGATGAGGGATCATGGAGTCGCTGCTGTGTGGGATAGGCTG
GGAGCAATGGCGGGTTCTACGCAACGCTGGGCCCACGAGTTGTTTGGATCGATCCGACGA
CAAATTGTCAAGGTTAAGGCGCAACTACTCGATGCCAAAACGAAAGCTCTCTCAACCGGA
TCCTCACTAGAGGTCCAGGAGTTAGAGGAGCAGCCAAGAGAGATATATGTGAGAGAGGAA
GTCATGTATAGACACAGGTTTATAGTGGATTGGCTGCGGGAAGGCGATCAAAATACGAAA
TATTTCCATAATAGAGCCTCACATAGGAAAAGAAAGAACATGGAAAAAGCCCTTCATCGG
GACGATGGCTCCATTTTCAAGGTTGACGAAGAGATGTGTAAGTTGGTTGCTACCTTCGAT
GAAAATCTGTTTACTTCGGATGGCTCGCAGGGAGCTGAGGGGTTGCTACAGAATGTTGAG
AACCTGGTCACTACAGAGATGAATGAGGTGATGCTAAAGCACTTTTCTAATGACGAGATA
GAGAAGGCGCTATTCCAGATGGGACCAATGAAGGCGCCGGGACTAGATGGTCTACCATCT
TTGTTTTATCAACGACATTGTTCATTGGTACGTGATGATGTGTGTAGCACGGTGAAGGAC
TTCTTGCATGGTGTTTCAGCGCTGGCTGACTTCAACGCCACAGTCATTGTCATGATTCCA
AAGTGCAATTCACCCGACTTCCTTTCCCAATTCCGACCCATCAGTCTTTGTAATGTTCTC
TATAGGATCGCGACAAAGGTACTTGCCAACCGATTGAAAGGAATCCTCCCCGTGATGATT
TTGGAGGAGCAGAGTGCATTAGTCCCTGGGCGCCTGATTACAGACAATGTGCTTGTGGCA
TATGAGTGTGTCCATGCTATTGCAAGAGGAAGAGGAAGAAGCCGTTGTGCGCTGTTAAGT
TCGATATAATGAAGGCCTATGATAGAGTGGAATGGGTGTTCCTGCAGAGGATGATGGAGC
GATTTGGCTTTGCTCAGGAGTGGATTGCGACAATTATGAGATGTGTTAGGTATGCTACTT
TCTTTGTGAAGCTTAATGGGTCCATGTCGAGGGGGTTCTCCCCGTCACGAGGTCTTCGAC
AGGGGGATCCGCTCTCACCCTACTTATTCCTCTTCTGTGTGGAGGGGTTTTCGGCTCTTC
TCAAAAAAGCGCCAGAGGAGGGAACTCTAAAGGGGGTGTCGTTTGGGTGCATTGGCCCCA
AAGTTGCACATATTCTATTCGTGGATTATATCATTGTTTTTTTAAGGGATCGCATGATAA
CATGGTTACCCTTAAGAATATCCTCTTAAGATATGAGGAGACTTCGGGCCAACGTGTCAA
CCTTGAGAAGTCCTCTATTTTCTTTGGCAAGGGTTGTCAAGAGGAGGACATAGTGACCAT
GAAGAACATAGTGGGATTTCAATTAGAGGCTCTCAGCGAACGCTATCTTGGGCAGTCCAA
GGAGGGTACTTTCAAATATGTGACAGAAAGTTCAAAAGGCAAGGTTAATGGATGGAAGGG
ACAAGGATTGTCCAAAGCAGCAAGGGAAGTATTGATAAAATCTGGTTTACAAGCTGTACA
TACACACACCATGAGTTTCTTTCACCTCACGAACAAGACGTGCCGGAACCTTACTTCGAC
ATCTTCATAATTCTGGTGTGCAGAAACAAATGGGGTGCAAAAGGTACATTGGATATCTTG
GCAAAAGATGTGTGCAGCTAAACGAGATGGAGGGATGGGTTTTCATGATCCAGAGGTCTT
TAACCAAGTGTTGCTAGTAAAACAGGCATGGCGAATTCTGCAAGTGCCTACTTCTCTCCG
CGACCGTGTTCCCAAAGCGTGTTACTTCAAGGAGGGCTCAATCCTGTCAGCTACTACCTC
CTCGTCAGCTCCGTATACCTTTAGGAGTATCTTACATGGGAGGGACCTGCTGTGGGAGGG
GCTCATATAGCGTAGTGGAGATGGAAGCAACGTGAGTATACATCATGCCAATTGGATCCC
CAGAGCTGGGAGTATGTAGCCGTTGGGGCAAGTGTGTGTAGTGGGGGTGAACCAAGCGTC
TCATCTGCTCGTGAAAGATGGTCGCAGATGGGATGAGGCCAAATTGCAGGAGATGTTCTC
TCAGGATGATGCAGTGGATATTAGGAAAATTGCTATTGGGGGGTGGGGCATGGAGGATTA
CCCTGCTTGGAACTTCACAAAGAATGGTATCTTCTCCGTGAAGTCGGCGTATCACCTGAG
AATGACCAAGAACAGGTGGAGGACCGGACAGCCGGAGTCCTCAAGGTGTGTGCCGAAGCA
TAGGGGATATATGTTGATGTGGGATACAAATGCGCCCGCCAAGGCCAAAATTCATACGTG
GAGGTTGATTCGAAATGGTCTTGCCGTGGGGGCAGAGCTCCATCGTCGGAGGATAAAACC
AGGTGTTTTTTTGTTTTGCGTGTGGCTGGGAAGAGACGATGCTGCACCGCTTTTGGACTT
GCCAATATTGGACACTTTGTCGACAACTGCTTTGTTCAGAAAAGGGGGTTTCAATGGCAA
TCCCACCGAGTCAGGTCGACTCCCAGAGCAAGTCAGTGTGCTGGCTTCTTGGCTGGTTTG
CCGAGGCTTTTGATGATGAGCGAGTGGCCATGGTCGAGGTAACTTATGGTTTTTGGCTAT
CGCAAAATGAGGGCAGGGATGGTAAAAGGACTGCGCCTCCTCATGAAATCATAGGCACCA
TTGTGAATCATATGAATGAGTGGAATCTGTCCACGATAGTCCAAAGAGCCCAGCTGGGCC
TCCTCCGCGGTAAAAGTGGTGCCCTCTTGACGAGGGTTGGCTCAAGGTGAATTCTGATGG
TGCGGTATCCAAGATTGGAGACAAGGGAGAAGCTGGGGCTATCATCCGGAACCATGAAGG
GGAATTCAGTGCTGGACTATGCCACCTCTTTCGAGGTGTTGTGATTCTCGAGTCTATGAA
GATTTTAGCCTGCAAATAGTTCTCCAAGTGGCACAGGAGATCAATGCAGATAAGGTCCAC
GTCGAGCTAGACTCACAGAGTTTTGTGCACATGGTGAGGAATCTGGGAAAATACATGTCA
AGTGCAGGACCATGGATACAATAGAGAAAGGATTTGCTTGCATCTTTCTCTGATTTTAGA
GTTTCGTGCGTGCGTCGTTCTACTAACTTCCATGATTTTGTATACCAATCATGGGCAATT
TGTATACCAATCTTGTGTAAAAACGTTCATACACTTTACTCGCTTCCATGTTTTTTGAAA
ATTCTGCTACTGGACGCAAAATTTTCTATTCTCCAACAAGATCAAAGCAAGTATCATCGA
ACATGATCCTAAAGGCTTTACTTGGCACACACACTAACTAAAACATGAAAAACACAATCA
TAAAAGTAACATAATTTTGCAAACACTCAAGAACAGAAAACAAAAGTGAAAAATAATTTT
ATTCATTCAGTTGCCTCTCAACAAGCGCTATCGTTTTACGCCCCTGGCTGGGCATTGAAG
AAGAACGGTAGTAGATTCCTTATGGATAGATCTAATATGAGCATTGCAAATCCTATACCA
AGCACCTTTTAGACTTTCTCCTCCCCTTTGCTTAAAATTGAGAACTTCAATCTCACGACT
GCTCATAGCAAGGGAGCAATTTGCCATAGTGATAAGGCAATCAAGAACACAAGCGAACAA
GAGATCTCGCAAGAAAACGACAAATGGAAAGAAGGCAAATAAAAAGGAAAATATTTTTTT
CAAGTGGGTAGGAAAATGAGAGGCAAATGGAAAATAATTTAATTGCAAGGAGGTGAGAGT
TTATGTGTGGGAACCTGATAGATCTTGACTTGATCTTCCCTGACAACGGCGCCTAAAAGC
TTGCTTGGTGTTGCCGATGCGTTGGTTTTTCCCTACAAGTGAAAAGGGTGATGTAGCATA
GTGATGACAAGATTTCCCACAATTTGGAACCAAGGTATCAAACCAGTAGGAAGATCCACA
AGACTATGTAAGTAGTACCTGCACACAAACAATAAATTCTCGCAACCCAACACGTGTAGG
GGTTGTCAATCCCTCGTGGGTAAGGTAAAACGGTAAATAGACAGATTGATAGATGCAAAT
AAAGTAATGACAAATCAAATGCAGCAAGATATTTTTGGGTTTTTGATAATATAGATCTGA
AAATAAAATAGAAAATAAATTGGAAACACGTATAGCAAAATAGATCTTGCAAAAAGATGA
TGGAAAATAGACCCGGGAGCCGTAGGTTTCACTAGTGGCTTCTCTCGAGAAAATAGCATG
CGGTGGGTAAACAAA