Contig Data
morexGenes
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Map Locations of contig_1565349 (6317 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1565349

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13316 2 2234 bp MLOC_13316.1 Available Available LOC_Os05g40320.1, FRAME:-2, EVALUE:1e-124, 13105.m04267 protein PPR repeat domain containing protein, putative, expressed





CDS Structure of MLOC_13316






Contig Sequence (6317 bp)

>contig_1565349 6317 assembly3_WGSMorex_rbca.fasta
TATCCATCAACTCGTCATCAGGGGTCACTTCTCCTTCTTCTCCTTGTGCTAGACCTCTAT
AAAGCACTAGGGGAAGGAGGAGTAGTGACCATTATCGATGGGGCGAAATATCACTGGGGG
AGTGTCCACCATATACACCAACATTATTAGTACTGGTGTAGATCGATGTTCTTGAGGGAA
GGATCCTTACTGTTGCCGTGAGGGTCGCTTCTCCTTCTTTCCCGTGTGTTAGACCTTTAG
GGGCCAGTTCTTTTGGTAGCTTCTAGAATAAGCTGCCCCCTATGCAACTTATTCTAGAAG
CTCAATCAAATATATTCTTTTAGAAGCCTACTAATTAAGTCTTAATTACTAGGCTTCTAA
AAAATATTTTTAGTTGGGTTTCTAGAATAAGCTGGGTAGGGGGCAACTTATTCTAGAAAC
CCAAAAAAGCTATCAAAAGAACTGACCCTAGGTAATGCACTCGGGGAAGAAGGGAGGAGC
GACCATCACGAATGATCGAAATATCAGTGAGGGAGTGCACATCATATACACCACCATAGA
CGAGAGTTGTTCAAGGGAGACTCAACAGACCGAAAGTCAACCTGTGTTGAATAGTGATCC
ATGTGTTAACTTCCTCGTAGTTGTCGTCGATTTTAATTTTTTAATAATAAACACAACAAA
TGGATGACGAGGGTAGGATCCCTGAGTACGATGACTATTCCGGCGACGGGGCTATGTGTG
ATGCGCATCCTCACTTGGACAACTGTAGGTGCTTCTCCCTCACGCTTAAGTCGGAGTTCA
AAGTTTTTACAATATATAACTTCGTGTTTCTTCTTAATTATGCATGAATTGAGATTTTTT
TTAACGTGTAATTTCTGTTTTTTATAATTCGACTAGTGCATCCCATGCTTTACAAGACGG
TATGTCCTAGAGAAGCTTTCTTTCGCTGACGTGGAAACGGCGAAGACGAAAAAAGTTTAC
CTTAAGGTGAACACATGGTTTCATTTTGTAGGCTAAGCTCTATAATGAAGTAAGACACGC
GCATTTGTTGTAAAAATTGGAAAGGATTGTGCAAGGCTTACGGATTTCAAGAGGGTATGA
GAATTATATTCGATATGTGCATTCCTCAATATGATCTAGTCACCGGTCCTCAACATGGTA
AAGGCATTTGGATGGATCTGGACATGGTTTCAATTCTACCTACGTGTGAGTTTGTTAAAC
AATTTTTTTAAATAATCTATATTGCTTATTTAAAATAGTTGTTATTCACACCTACTTAAG
TTATTTATTTGTAATTGACAGCTTATTTTCTTTCTTTGAAAGATATACGAAAAATAGTAG
ACAAGACCTACTATAGTGTTGGCTCACAGCTAACTTGGGAGGAGAAGAGTTCTCTTATCT
CCTTTGTTAACGATGTTTTGACTTTTAAATGCATTTATGGAGCTGGCCAAAATTATACAA
AATACGTGCCACTAGTTCACGAGTTGAGCGATGGTAAACTTCGAGCAAATATCCTGGTAA
TATTTTTTACTATTATGTCACTAGTCCACTATTCTTCTTAAGTAAACTACATTGCTAACT
CTGTTACTCTTATGTTCTTCAACATAAGCTCCCGAATGATGTTATGCCTTTGCTGATGTA
TGTCGAAGGTGAGATGACAATTTTTAGTGTACGACCATGGATGAGGGCTTTCGAATGTGC
ATACTCGACTTTTCAAACAGACGAAGGCCTCAAAATCAAAGGGTGGAGAAAAATAGTGAA
TGAGCGCAACCCACTCCATATGGAGATGAGGGATTTTCTTTCTTAGAGAGGAGTAGGTAC
TAGTACTTGTCATAGTGAGATGATTATAGCAATTAGCTACTAGTGGTTAATTTATGATGA
TCATTATGATGAAATACTGTTATATCACCATGATGATGAAAAATTGTATATCACTATGAT
GATGACTTGCTATATCACCACGATGATGATGAGTTGTATATCATAGCTACTATATAAAAT
TTTACATAAAGATGTATACTTGCAATATAAATATGCAAAAGTTAAATACATAGGTATAGT
AGTTGTGCAGGTTAATACCCGATGCTACACATAGTTAATAATAACGCACGACACACCTCA
CGCTACTGCTAGCAAAAATAGTAGTAGCATGAAGCCAAACACTCGATACTATTACCAGCT
AGCAGTAACGCGGGCCCTAGTGCTACTGTTAGGTCTTTACCCTTGAAAATTGCTTTTGAA
GCTCGGCCTCCATAGTGATCTTTAAATTTGAAATCCAAAATTCATAAAAAAATATATTTT
TTCGGTTCAAAAAATTCTGAAAATTTTACAAATATACATTAAGGCGTAATGCACAAGTGT
GTAAATTTTTAGATCAAGATATGTTGAGATGAGGGTTATGTAAAAGAACAAATCCAAGGT
TTTTTAACGCATGCTACTATTCATCATTTCAGATCTTGAATTTGTCTTTTTATACAGGTC
GCAATTCAAAGTATTTTATCGTGAATTTTTGTACACGTATACATTACATCCTTACATACA
TGCATATTTTTCTTAGAATTTTTTTAAAAAATATATATTTTTTTTCTTTTCAAAATTCGG
GCTCCATGGAGCTTGGGAGCCAAAAGGCTTTTACCCCCACTACTATTAGAATTTTTTCCT
AGTAGTGATAACAGGGGTGCGCCATCAAGACAGGTCTCACATCTCAGAAGTGAAGATATT
CTCATATGCGTCTTGGAAAAATGCCAAAGTCCCGGCCTCCCGGGTGTTCTATATACAACA
GCTAGACTTGCTGTTTTTCTTCATCTCCCTGAAGGCAACCACAGTATAAAGTTCAAATAT
ACGGCTCCATAAACCGACAGTGCCCAGCCCTCTACAGGCTGAAGCATCAGCTCTTATTTT
GACGGCAAGGATAGCTCAGCGTCTACAGCTCCAACAAGTTACGTTCCTAACAGATAATCT
CACACTAGCATGAGCTTTGGCAGACAGGAAACTTGTCTCCAACAAGATCCTTTGGCAGAT
CAGGAAAGATCTCGCAAATTATTTGTTAGCTTCTGAAGGTCTCACTTAAGTATACATTTT
TCAGAGACCTAAATGGCATTGCTCAGTGCAGCTCATTAGGTTCTTAATAGAACCTGTCAT
TTGTTGTTTAGTTCAGCTCCCAGGATTTGGGATTGCTCTCTGTTATCCTCTCTATAATAA
GTCAACCTTCACGGCCTCGTAATACATGCTGTAAAACTGCTTTTGAGCTGAATGTATAAG
ACGCCTTTTGACGTCTTTTCACCGTTAAAAAAAGTATCCATTACATCGCATGGCATGGCA
TCACACCTTCATCTAGGGGCTAGGAGCTCATGGCATACTTCTCCGTTCATCATCCCACGA
ATTTTAGGATGATCTATAAGCCCAGAAAATTTGGACAGGATCAACTTGAACAACTACAGT
CTGTTCGCTATTATGCCTAATGATTTACAAGCATCGCCTACAAAAAGGAAGCATATGCCA
AGATTTCACCATTCTTCAGTGCACTGAAGAAAATGCCGAAATTTCTTACCCCTGGAAGTT
CAGAGCATAACAGCGCTCTTTCTAATAACGGGCATTATCCACATGATAATCCAGCACTGC
ATCACGTATATTTCCTTTCAATCGGGAACTACAGAGTTGCTGCTGACTCGGGTGGCTGGC
TGCACCTCTTGAAACGCAAATCTGCAATGGCCTGCGATCATGGTATTTCATTCAGGACTG
TGGCACTGGGATCATTGTTGTGTCTTTGTAACCATCAAGCTACTGTCATCTGAGCTTTGT
GGTTCTCTGTCTCTTCCTGGCTTACATATACTGATAACGATGTCAACCAACAATACCAGT
AATCCATTCGAAATTTGGAAGTCTGGAACAGGGTACCAGCACCTTGTGCATACCAAGGAA
TCACACAGGCCTGGAAGACAGCTTTTCTGCTTCTTACCTGCTGCTGTTCCTAACCCTTCC
TCCCTTGGACTTCTGCCTGAAATCTTCAGGACCTAATAAATCAGGCGCACTTGAATTCAT
CTCATCAGCGAGCTTTTCTGCTAGCTCAAACCGCCCGGCTTTTTTCATGTCACTGATCAG
TGCACGATAGACATATATCGAAGGTTGGTGCGACTTCTTCATCTGCTCAAACGCCTCGAG
GGCGTCAGCAATATGGCCTGCCCTTCCAAAACAATCAATTAGTGCGGTATACGTTCTCAA
ATCAGGACTGATGCCTCTCTCAAACATCTCTCTTGCAAAGCTTTTGCACAGACCCAATCT
TCCAAGCCTCCGCAAGCAGTTAATCACCGTATTATACGTCACGATGTCAGGAGAAATGCC
AAGCTCCTCCATCAGCTTCACCTCACAAAGCATTTCGTCCACCCGACCAACTTTTCCAAG
CATGTCCAAGACAGTGTTGAAGGTGACAACATCCAAGCATCTCCTATCTTTCTTCAGCTC
CTCGAAAACGATCAAGCATTTATCGAGGTGCCCGTATGTACCCACGGCGAAAACAATGCG
ATTCGCCACCGTGGGACCTCTGCCGTTTGTGATCTCCAATACCTCTCTCACAAACCCGAG
TAACAGTTCAGAGTCATCTAGACCCCCAATGGCCCTGGCGACACACATGTAGGAAGTCAA
GTCGGGAGCAGCTTTGGAGAGCAGCAAGTGTCTGAATACCTTGGCGAAGAGCGCGAAGTC
GTCCGCTTCGCACGCTCGCTTCAGCAGCAGATTGAAGGTGCCCAGGCCCAGACTGATCTG
CTCGTCGCGCAACCGCCGGAGGATCCCGGCAACCTCTGTGAGGTCCGCTACGGACAGCGT
CGAGCCCCAGTCCCGGTCGAGGGGGTCGGGTCGGGGCTCCAACTCGCTCCCCTGATCCGC
CGCTGGACTCTCTGCGGGCGGCGAGCCCGCAAGACGGGAGGAGGGTATCGCGGGTGTCGT
TGTCGGCGTCGTCGCCGCAGCTCGATGGTGTGGTCGGCGGAGTGCGAGGGCGGCTAGGCG
GGAAGGAGCGGTAGGGAGGCGGCGTATTAGGGGGAGCATGGGGGCGGCGGGCGGGAGCGG
ACGCCGGCGAGTTAGGGCGAAGAGGAGACGAGGCGAGCTATTGCATCCATGGGCCTGTAG
GGGAGCTGGCTTGGGTTTGCTCCTCCCCCTGTCAAAGAGACGGAGGTACGCACGGCCCAA
CATTGTCTACCACTTGCCAGTGCAGCACTGAGCCCCACTGGACAGGGCCGTACATATTTT
TTTACATTTAAAAAAAACATATTTTTATGAAGACTGCTATGCGTTGGTCGACGGATTTTT
TTAGCCGTTGGATCCATCGGGGTGCACATTTTCTATTTTGTAATAAAGACCTTGTTACAG
AAATATTTATAACAAAGGTTGTGTTGCAGAATTTTTATGCAACAGAGGTTGTATTACGGA
ATTTTGCAAAATTATTTTGCAACAGAGACGGTCTTGCGATTTTTTTACAACATGAGTGTT
GTTTCAAAAAAACTACAGACAATGTTGCGAAAATTATTTGCAGTTTTCTTTGCAACATAG
ATGTTGTTGTGAAGGGTAAATTTGAAACATACATGATATTGCAGGAAGAGAGGTGCAAAG
GTACGCGTACACGCGTCATACAGAGGAGATGACGGATCGCTCGTGTCCGATCCACCGGCT
GAAGGTAAGTATTCCCTATTTTTATTACTCCGTCTCAAAATAAGTGTCGCTATTTTAGTA
TTAAATTTAAACTAACTTAATGCTAGATTCACGACACTTATTTTAGGATGGAGTGATACA
TTATAAGGATAAAGAACTGTGGCGCCCCGCCTGATTATCATTATAGCCAGACGGTCGCCA
TGCATACCAGCCCACGAAATCACTTTGATATGCGCATTTACAACAAGTATCATGAACACA
TGCATTTCTATTAATAGATATAAGGGTCTTATATGGGATATTACAAGGGTGAAGGCAACG
GAAAAGCTCTATCTAAGGCAGCATGGTCTTGGTGCGGCTCCAGTTCAGAGGGATCTGACT
AGGTTACTCCTCTAGCCCGCGAATACTCCAACTCCTTGACGACGGACGACGGATCCTTAT
GTAAACCTGGCCATGTTAAAGGTCGTTGAGTACTTTTGAATGTACTCGCAAGCAAACCAA
ACTAACATATACATTAAGCAAAGCAATCCATGGCATTCAAGCATGATTTATTATTAGAGC
AATATTAATCATCATGACCTAGCAATCCTATCTAGCAATATTAATTATCATGTTATAACA
GGATTAACCAGCAAGATAACTACTAAAGTAGATATGATAAGGTAAATCATATTAAGTAAA
TAATTTATACTCCGAAT