morexGenes - Barley RNA-seq Database

Contig contig_1565321
Source Contig contig_1565321
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1565321 (5975 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1565321

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13301	1	959 bp	MLOC_13301.1	Available	Available	LOC_Os10g38870.1, FRAME:+2, EVALUE:4e-27, 13110.m03540 protein heavy metal-associated domain containing protein, expressed
CDS Structure of MLOC_13301

Contig Sequence (5975 bp)

>contig_1565321 5975 assembly3_WGSMorex_rbca.fasta
CTCTAGTCCCTATTTAGTCCCTGGAAACAAACGGATAGGGACTAGGGACTTTTAAGTTGG
GACTAAAAAGTCCCGGGACTTCTAAAACAAACAGGGCCATAGACCCGTCGTATCGCATAT
ACGTACATAAATATATAGACAAACAAGGTTGGCAATGGTATGTGGAATACCGTGAAGCCA
CTGCCCCTCGTCAATACCATCAAATCTATTATTGATATTTACTTTCGTAGGGTACAATAT
TTGATATTATAAATAGTTTTTGGGAAATGTTTACCGACAGCGCGTCGGCCGAACTCTTCG
GCCAGTCCTACGCGCGTTGTACGATTCCACGCATGGGATCCCCTTTCTTTTTTTGCTGCG
AGGCGTCATTTTTGCAGCAACTGTTATCCTTTTTTGTTACTATCGACACGGTTTTTGCTG
TAACCGTTGATGATTTTTGCTACATTTTGTCCACTAAAGAAATCGCATCCATGTTTAGTT
GCAATCCCAGCTTGTCGGATTTTTGTTGCTACGATAAGTGTTAGTTTTTGCTACAACCTT
TATTTTTTTGCTACAACCGTTCACTAAAAAAGTTGCATACACGTTCATTAGAGTTTCAAC
CCGAGTTCACTCGATTGTTTTGATACGGTCTACATTTTATTTCGCTAACACACATCATCA
GCATCGTTTTTTTCTACAACCACGTTGATATTTTTTTACTACAACCATATTTTTGTTGCA
TCCGTGACCGAAATTTGCTACATCGTGATCGAAATTTGCTGCATCGAGGATTTTTGTTGC
ATGGACAGATCTGACGATCAATACAGATCCAATCTAGCGGATCGGACGGCCCGCGTGGCC
GGCGCGCCGGCTTAGAGCACTGCCCATATATTTTTTTACAATATTGACCAAAGTTTACAA
AGTTTGATTTTAAAAATAACTGCTTAATTTTTCTAAACGATTTTAATATTTGATATTATA
AAAAATGATTTACTTTTATTATGTTATAAAAATATGCACACTGTCGTTAGCACTGCACAC
TAGTAGAGACGAACGAACTTGAGCAGAACAGCATAAAAGAGGCCAAACCGTCACCCAAGT
GGAAGGAGGAAGAGAACTATTTGCCTTCACCAACTTCACTTTCCCCCGCCAATTCTCTGC
CCCTTGCTGATACGTGACCCTCGCTCTCCCCAGCTGTCGCTACAACCTTTATTTACAGCT
TCTTCGCCTCCGCCGTCCAGGCATCTCTCCACCATTGCTTTTTCCGCCATTTTAACCCCG
CACACCTCCTCTTCACTCGTACTGTTATAGTATTATTCCCTCCAATCCGTTCCGTTCCAC
CGGTACGCTACGCACCCTCCCGGGCTGTCCGTACTGCGCCGCCGCCGGCTGGTCTGGTCC
TCAGCTCGCATCTCGGGGACATGTCGAAGGTTCGTGCCAGGATTCTGGGCTCATTCCTTG
GGATCTTGCTTTAGAATCCAAAACGTGTTGCTTTTATCTGCCCCTTTTGATCTTTGCTCG
TCGTCCGTATCCCCCGTTTCGAGCTCTGGCCCGTATGTGATGATCACGCTAGCTGTTTGG
TCTTGCTGCAGAAAATTGTGGTGAAGCTGGAGCTGAACAGCGGCAAGGATAAGCAGAAGG
CCATGAAGGCCGTGTCGGCGCTCGTCGGTACGACCAGCACTATTTTGTATTTTTGAATGG
CTCGTGAGGAACGATAAGAGCTAGCTGAAGCAAGCAAGTAACCGACCTGTGATCTGTCTC
GTGTGTGCAGGCATAGACTCGCTGTCGGTGGACATGGCCACCCGCAAGATGACGGTGATC
GGCATGGTGGACCCGGTGGACGTGGTGAGCAAGCTGCGCAAGGCGTGGTCGGCGTCCATC
GACTCAGTCGGCCCGGCCAAGGAGCCCGAGAAGAAGGACGGGGACGGCAAGAAAGACGGC
GCTGACGCCAAGAAGGAAGGCGAGGGGGAGAAGAAGGACGGCGACGGCAAGGACGGGGCC
AAGAAGGATGACGGCGAGGCGAAGCCGCCACAGCCGACGGAGCAGCAGCTCGCCGAGCTC
ATGAACCAGTATAGGTCGGCTTATTCGGCTTACCACAACCCCTACATGAACAACCACTAC
GTCGTGCAGAGCATGGAGGAGAACCCCAACTCCTGCGCCATCTGCTGAGAAATGCACGGC
GTAGTTATGCAGAGTACGTATGGAACAAAGACGCTGCCTGCTCTCTTTTGACGTGTATGC
CGTCTCTGTACAGAATGCAGTTATGAGGAAGGAGGACATTCACGTGGAAAACTTTGCTGT
ATGGGAGAATTATAACTGAAATAATGACATGTGTCAGCAATTTTGTTTTTTTTTCTTTCA
AATATGTAGGAGTACTATATATTATGAGTGATTTTTTTGTGAAGAGAGTCTTGGCTCACT
GGTTATCCATGCTAGGACCACCTGCTTTGCCCATATTCCGTTGTGTGGTGCTAGACATTC
CTCTATAGCTGTCAGATGATTTCCGTTTGTTTGTAGGATTTTCATGGATGGCAGTTCTTG
CTTTATATTTCCATGGAGAATAAATATTTTTAAGGTACCTATAAAAGAACGAAAAGGACT
GGCAACTACAAAGAAATGTCGCAAGGCTTAGAAAGCTGAGAAGACTTGGTATGAACATCG
CTCATGGTTATTTCTATAACACCACACAACGAAATAGGGGCATAACTGTGTAAGTCTAGA
AATTAGGGACAAATGTGAGTAATGGGTTTTAGTTAAAAATAAAAATGTAAATGCTTCATA
ATATCCTAGTATTCGTATTGAAATTGTTGTGTGCATCCTTAGTTGGTGTATACTGCATAG
CCTAAAGGAAGTGAAATTCTCTCGAATTGAAAGACATACTTAACACTGCATCGTGTGTTT
TCAGCCGTCACATAACCACTCCAGCGTCTTCCTCCACCTCGCCACTGCCACCGCCCAGTT
GGAGGTGGCGGCGGGACAATTTTGTCGTCCCCTTCCTTCGTCCCAACCCCTTCTCTCGCG
GCACCTTGTCTTGGGAGGCTTGCTTGTCCGTGAGGGTTGGTCGGATCTGATGTGGTCTAT
GTGTCATTGCCGCTTTGGGAAACAAAGCCCTCACGGATGTCTACCGGCTCAAGGCATGGT
TTACTCCTCATGGTGGCATGTTGGGGCCATCGTGTTGTGCTAGATCTAGCCGCCCTTGTG
GTGGCTGCAACCTACAATGGTGGAGGCTACCGCCCTTTGGCGGCGTCGTCTCCTCAGCGA
TGGAGTGTGGCCTTTGCACAAGGTGGCAAGCATGACTGCATAAGTTGGCATTGGAGGTTC
CCGACAATGGTGCTCATTATGGTTGTGGTTGGTTGAAGCATGGATCCGGCCCGCGGTGCC
TTCGATATGACTAGCGTCATTCGGCAGGTTACAACCCCGACTGTCCATTTGAGCTATGGC
TTATGGTGGCAACGAAAGGTCTTGGTGAAGGCTCCTCTCTCCAGATCTTGTGGCTGCAAC
CGACAGCTTGTACTAGCGAAGTTGCCGAATGCAGCCGGAAGGTTTCTTTGTGGGTTTTGG
CGCTCTCTATTTGGCCAGTTTGACTTCAATGGTTAGATGCAACCTATGGACGGCGGCTTG
GTGCAGAGGACATGGTTCTACAACAGTGGCGGTGGGACCCTATAGCATATAGCTGCTTGG
ATCATGGAAAGTGGCGGCGACAACACATGATTGACTCTAATTTGGTGGTGCTTCTCTAGT
ACTTGGTCTTGGGCTCAGTGATGAAACTCTAGGTCTAGTACGAGTTTGTTATACCTACGT
AATGGCAAAGTGTTTGCGTTATTATCTGGTTGATCGAAGGCATTGCTCAGATATGCTCAT
ACTTGTTCTTCAAGGTGAAAACCTACAAGCTGACTTTTGTTGGTTGGATCCGGTGAGAAC
AGCTCTTGAACGTCGTTCTCTTAGTGAAGGCGTTGATGTTGAAGAACTTTTTCCGTTATC
CTTGTGGTATCAAGGGATGGTCAGTGCGAATATGGTCATAGTTATAGTTTATCGATTGTT
GTTCTGACCGCTTCAGTTAGTTCTCTCTTGCTTGGGCATAATTTCGGTCTTGTATGACTT
TGTTTTTTATTGGCATGTATATTTGTGTGTACTCGTTAGTGCTGGTTGTGTGCATCCTAA
TGTTATAGATGCTGGATGTGTGCTTATTATGTTTGTATCCCTTGATGCTTCATTTTAAAT
CAAAAATTTATCATTTGTTCAAAAATATAATATTATGATTGAAAATATGCGCCATGCATG
TGTGTAAGGATCCACTGATCTTCGGTTTGCGGCTTCAAACTGCAAAATGAATTACTATCA
TGTTTTCTGCTGAGAGGTTAGTATCACGCTAACAGTTGTATACTCGAACGATGCACAAAT
TTTTACTCTGTTTGTTCTAAATTATGGAGTTTTAACTTTTCCTCAAAGTCAAACTTATAT
AATTTCGTTCAAGTTTAAAGAATAATATATTAGTATCTATGGTACCAAATTAGTTTTATT
AGATTTACCATAGGTTATTTTTTCATGTTATATACATTTGACGTTCTAAATATTACCATA
TCTTACATTTTATCAGAATTATAAAGTTTATCTTAGGAACTCTTTTTTCTAATGTCATCT
TGCTAAACCAGTCATGTTACATCTTACAGTTTGATATTCGAATCTTATAATAACACGTAA
TGCCAACCAAGAAAGAGTTATAGCTGACCTCTCCACCTATGACATAAGAGCAAGAATGTA
TGTTGGTAATGAAGACAAAGAAACAAAACGAAGATATCTTAAGAAGAAGCCACTAGGAAC
AAACTGCCAAGCCGACACTGTTGACACATCTCAGTCGTGGATAAGCATAGCTAGTATTCT
AGATTTAATTAATGTTCAAGAACTTCATCATTGGACAGGAGATGCTGATCAAATTGGACA
TCATATCAGCAGCCAATACCTTTCGCCCAGGATTGGTCCAATAGAATTAACCACGTCCAA
GTAGCACTAGACTACTATCAGTGACCGAATGTACCATTTGGCACACTTATTTGGACCCAA
ATTCACAGTGGTCACTTACACACATGTATACGCAATGACCTAGTTGAAAGTTACCCTTCG
TAACCATAGTACTACAAACCATAGTACAAACAGCAAAAACCAGGGACTGCCAGCAGCAAT
AAGCCAAGCCATACTCAACTACTGCTTTCCAAGGGAAGCGACATAAATCCATGAGATCAC
CTATTCTGGAAGCATCAGGTCGGATGCATTTTCTTTTTGAGCTAAGAACCGTGGAACAAT
TGTTCTACTACGGTATTTTTCATATATATGTATAAAGCAGTTAAATATTTACAAGTACAA
AGCATCTAAAAAGAAAACGTTTAACCAATTCCAGCCGAGAAACATTGAGAAACAAGATGA
AATTCTTAAATCAGGGCAGCAACATCACTGACTTGTGGCAACTAGTTCTCGAGGCAGTCT
GCATTCCTCTTTTTAACTCTGTGATCCTGAAGTCACATGTCATTTCCGTGCATCCAAATG
TTCTAGCAGCCTGAAACAGAAACATACATGTCAATATGGGCAGGTAACTTGCTGCATGCA
AAGGAAACTTCATAAAAAATTCAGAGTCCCCTGAAATAAAAGCCATTTGTGCAGGGAACT
AGGCATGGCATTCAGAAGTTGCAGGTCATAGGAATGTTTTAACGAAAGCCATTTGTCCTA
CTGGAATAAAATGTTATGTGCTCCGTCGAGTCGATCACGACGTGTCAGGCGTGTGAGGCC
GGTAAGCTCTGTACAATGGAGCATAGTGCGCGGATAAGCACTGATCAGCAAAATCCTCTG
AAGAAAAATTCAGGAAGGATACTACAAATGCGTGACTGTTGTTCAGATTTTTTTTTAAGA
AGGAGGAAACGAGCCTCCGGCCTCTGCATCAATCGANGCATGCAGCCATATTATTAAATA
TCCAAAGTAACAAAATAGTTCGAGATAAGTCTGAA