morexGenes - Barley RNA-seq Database

Contig contig_1565318
Source Contig contig_1565318
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1565318 (6067 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1565318

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13300	1	1143 bp	MLOC_13300.1	Available	Available	LOC_Os10g04342.1, FRAME:+1, EVALUE:3e-87, 13110.m00349 protein stripe rust resistance protein Yr10, putative, expressed
CDS Structure of MLOC_13300

Contig Sequence (6067 bp)

>contig_1565318 6067 assembly3_WGSMorex_rbca.fasta
AGTAGATCATTAATTGATTTGGCGACGTGTTTACCCGTGCTCCCGAGCGACACCCCAACC
GACGTAGCATTATCGATAATCTCTTGAGGCGTAAAATGTAAAATAGAATGGGCCTTGTCA
ATGGACATACCTGTGGAAGCTTCGTCTCTCATCTTTGCCACACGCTTAGCCCGCCCCATC
TGCAAGTCATCCGCGTCCGGTTGCTCCTGAATCCTCTGACTAGACCTCATGTCCGACGTC
ATCGGATTAGCTATCCCGCCATACGCTATAACTTTTTCCGCAGAAAATGAGTCAATGGTG
CCTCGTTCCGAAGAATGCCGAGCAGGTGTCTCCAACCCGAGTTCCGCTGGAGAAGGGCTG
CGCTGCACTGGCTCGGCCTGCGCCTGCTGTCCTGGCTTGGCCTGCGCCTGCAGTCCCATG
AGTGCCGCAGGGGAAGAGATGATGCCTTGCTGTACATGTCCCTGCGTACCGAACTCTGCT
AGATTAGAGCTGTGCTGCCCCTGCGCCTGCACTCCCAATAGTTCCGCAGAAAACGAGAGA
CTGCCTTGATCTACAGAAAGCTGAACAGGACCCTCCAACCCGAGCTCCACTGGAGACGAG
CTGCGGTGCGGCAGCTGTTCCTGCGCCTGTCCTCCCACAAGCAGCCTGGAAACCTCCTGG
GAACGAACGCCGTCAGCAGCAGCAACGTTCTGCACCATCAGACCGTCAGGTCCATGCACA
ACCGGGGATTCATCAACCCACAAATTGTCGCCCAGCTCCAACCCAACGGACCCAACGTTG
AGACCTGATAGATCCTCCCCAGCACTTTGTTGCATAACGCCAGTGTGCACCTCTTGCGCC
TGTTCTACAACATCCATCTCCGTTTCCAGATGTTGTACCCCGAGCTGCCCCGAATTACCA
TCCTGCCTCTTGGCAGTATGAAGATATGCCGAAAGCGAGACGGCTGATAACATACCTATC
GCTTCAGGTAGTGCACCCGGCGTGTGTTCTTTCCCTAAGTCCTGCACGACGTGATTGCAA
GCCGGTGATGACCGAGACACACCCATCTTAGCCATAGCCGACGAAGGCTCAAAAGATCCA
AACTTCAGTTGAGACGTCGGAGGTAGTGACGAAGGCGTACCCCCTACAGCCTTACTCGCC
TTGTTGACAGACGACTGCTGCTTAGAAGAATCGAAAAGGTCATCCTTCTTCTCAGATTCC
CTAGCTCCCATATCATCGTCTTTATCCGTCATATCGACATCTCCATTAGCCACCGAATCT
TTAAAAAGGTCCGGGCTTTCTATCTCCAAAAACAAAGTGTATCTCGCCCCCTCAAAGGTC
CACATAACCTCATCCGGCACTAGCTGAATATCGACGACGTTGACTAGCATCATCGGCACT
CCTTTAGCTCTAGGGAAAATCATATCTACCTTCTCTGTCTTGCCAATAAGAGAACCGAGA
CTCCAAGTAATGAGATAATCATTTAAAACCTTCGATGGAACTCCCGCAAAACGGACCCAA
ATCTGAGGAAGCGGAATACCTTTTGGCTCCTCGGTCTTCCATGCGTCAAACTCCAGTACA
CAGCTTGTGCTTGGAACTTGACACATACCAAATTTGAGCAGACGAGCGAGGTCCTCCTTG
GTAGGAAAAACCACTTTCAATACATTATCTGCTATCAACAAAGGTTCCCACCTAAAAGTT
GCTGACACAAGCTCTCGAAGCTGTTGTACCATCTGATCAGTTGTCATAGATCCTCTCACA
ACAGTAACTGTCCCTACATATGTTGTATCTGCCATGTGCGCCTTAGACGCCTCCGTTGGA
GACTCGAAAAACATAAGTTCTGGACAACACACTCCGTAAATCCTTACCACCGGCATCGGA
CCAACCGAAAGTGGGCAAGCAGTTGTCCCGTGTTTAGGCTTAAGACATAAATCACATAAA
TCTGCCTTACACTCTGACACAAAATGCCCTGCCTCACTGCATCTATAGCAGGTCATCTTC
TCCTTCTTTCGCGCCCACTTTGTCGGACGCTCTCCCCCATTGGCCTTACCGACAGTTTCA
GCTTCCTCCACCACAGGTTTCTCCGCCGTCAAGACTGGAGCAGCCCCCTGATCCTTAGCT
TCCAGGGGAGCGCTGTCCGGTGCAGCCACAGTAGGAAGCAGAGGAGGTCTAGGGCGCCTC
CCGCCCCCTCTCGCAGTCCAGTTGGGACGAAAAGCTCCCCTCCTAGTATTGGGTCCTGCC
ACCCCCTGGACAAAGTTTCCAGGAGGGCCGGAGTACCCACGCCCAGCAGCAGCATTGTCT
GGCCAAAACTGACCACGACCACCCCCCGCCGACGAGGACCCCCTAAAATTGCCATCAGCA
TCCGCACCATCATCACCCCAGCGCCCTCGAGCCTGGCCTTTGTGCCCCTCAGGCTTGCCA
TGCGGTTGCGCCCCCGGCCCAGGCAGCGGCGCGGCGATGCCAGGTTGCGCCGGTCGAGTA
TTTGTCCGTGAGGACTTGGCCGGTTGCTGCAGAGGATTCGACGGCTGTCCTCTACCCGCC
ATGCAGTCGGAAGACTCCGGAAGAGGCGGGATTCTCATCGCCCGACCGGACCGTAACCGC
GGGAACCCTGGCAGCGATGATCTCTTATAGCGTGGCGGCGGCTCGACAGCACCCACCGTC
GCTATCAAGGTCTCCTCGACAGGGTGAATTACCAAAGGAACGTCTGGGCTTTCTGCCGTT
CGGGCCTCATACCCGAACATCGGCAGGCCCAGGTCTATCGAAAGGTCTGCTGGCCCACTG
GCCATCTTCAAACCAGATGCAGCCCTTCCCGAAGAACAATGCACTGACGACGGCGCCTGC
TTATCCCGAACATCAAGCGACCGCGATTTCCTCATGTTCCTCGTTTTGACGAGAATCCAA
TCCGGAGCAAAGAAATCCGCTAGGTTAAACTGATGCGAAGGTACCTTTGGAACAGGACCA
ATCCATGGTCGCATCCCCTCCTTCGGCTTTGGAGCTTTCCTCGACGGGCGCATGTCAAGA
ACATGGCGTCTATAGCCAGGCAAGCAGCAATCCGCCAGCGCTTCTACCTCCCGCCTATCT
ACATGATGATCTGGTCGGACAGGGATTACGCTATCCTCTTCCTCGACGACCTCATCTTCA
TCCCCCTGGTCAGCCAGCGCCCAGAACCGGCCACCACAGCGCACCGGAGAAGCCGTTAAA
TCACAAACCTTGGGGTGTCCATTGTCCACGCGCTGCTCCTCCCAAACGTTCCCAACCAGC
ACCTGTATACCATCGATCTCCAAGATGTCTCCCACCTTAGGTACTTGATTAACCTGCAAG
TAAGTGCCAGCTAAAAAATCATCATCTTCATCGCGAATCGTAACCCAGCGAGAAGGGAAA
TGCAATACTATTGATCCGAAATACTGCCGACGAGATTCAGAGGAGACATCCTCGAACGCC
GCCGCCCACTTTCGATGCGCTGAGGTCCCGTCGAGATGCGACTTGGCATCGCAACAGGTA
GATCGGATCCGGCTATTGGAGTGGTTGGCGTCCCCAACCCTCCTGATCGCCGGCCCGATC
TCTCCTCCGCAGTCAGCAACGGCGAGATTGTGGGAATCTTGATCGGCCGGAAGCCAAGCC
CCCGCGGGAGACGGGGTGGCCACTGGCGAGCGAACGCCCATCTTGGTCTCACATGTGGAA
TGCCGCGCCGCCAGTGAATTCCCGTCGACGGGGAGGTGGTGGCTGATCCCATCACCGCAC
CCATGAACGGCGTTAGACCCCCCGCCCTTCTCGCAGAGATCTGCATCCACCGGGGCGGAA
GTCGCCTGCGGTGTCGCCGCAGCAGCCTCCCCCCGCATCCCACGGGCATCTGTTTCACAA
TCTGTTTGCTGAGAAGACGGGCATGGAAGATGCAGAGTCAGGTCAGGGTTCATGATATGC
ACAGGTGGTGCAGTACAGTCTTGAGCAGACACAAGTGTTGTCAAACTTTCCGTGACACAA
TTCAGAGTTTCGGGCAGGTTTAAATTCTTGCAGACCAGCAGAATGTATACATGATCTGAT
TCGTGCGAGCAAGGCCTGGACTGTTGCAAGACGACCTGCGTTATCGTGTTACTAAGTTTT
CAGCTTCGGATGGTTCCACGAATTTCAGGGAAGATCAAAGCAAAGAGCGGTCATTGCCAG
AAAAATACAGGTTGATCTAAACACGATCCACAAAAGTAAGTGTGAATGAGAGAACCTTCC
AAACATGTGGGCTCTGATTTTCAAAGGCGTCTAAGACCACGGGAGACGAGTCATGAGGTC
GTCGTGTGACAGTCGCATCACAAGCTGCAAAAATCAGCGTAAGAAAGGAAGAAGTGCACA
GTAAGAAAAACAGAAGTTAATTGCATGGCTCACTTGACTAATGGAGAGATGAAAAAAAAG
AAGTAACAAGTAAAAAAGTGTGCTGCTAGTGAAATTGGCTAGATTAAGCACGAGCTTATG
CACAACATTGTCTCGGTCTGCGGACGCCCGAACCCTATAAATCTGCTTTTGCGGCTTAAT
GAAATATTCAGGTGGTCTGTAAAAGCACCCCGATGGCCTTCATAAAAACAAACATTGGGT
TGGAAGCTCCCTTGGTCAATGTTCGTTTTTTTTTTCTTGGCCTCAAGTGATAGATCATCA
GACAGTAGCCCAATTCACTTAATTACTCCACTTGCATTTCTCTGCTCCTAATAAAGTTAT
GATATGATAAGAGGTGAGATAATGTTTGAGTGGAGCATATTTATTTCTGAGAACATTTCC
GTTCATTTTTTTTTTGAAAAGTCGCTTGCATGTTGGCCACGGTGCTCTAATCGTTTCCCT
GTTTACCGGAGAAGGCTTCCAGAGCTGTGAAGCAGACATGACGCTGTCCATTGTCCGCAG
CTACTACAGCCATGGATAGAGCGTGAGCACCGTGGCGATAGGCTAAGAAAATATCTACAC
TCGAGTCCGAGGAAATTAGATGTGCGCCGACTTGGGGCCTCAGTGCTCAGAATTTTCTTC
CTCGTATCTCATCTCCTGGCCAGTGGATCCATATCTCATCACGCGTCCAAAAAATCCATA
TCTCATCATCTGCACTTCTTTTCACTCTGAGCACACCAAGCACAAACTAGAGGAATCGAT
TGAGAGCTAGAGGCCTAGAGCTCAATGGAGGGGGTAAGTGCTTCGCACGGTGTGTTGGGT
CCCCTGTTGGTGAAGCTCACCGGTTTGCTTGCCGGTGAGTGTTCCCGGCTGAAAGGCGTC
CGCCGAGAGATCCGCTCGCTCAAAGCTGAGCTGACAGGCATGCATGCCGCGGTCCACAAG
TACACAATGCTGGAAGATCCCGATGTCCAGATGAAGGCGTGGATATCGCTGCTGAGGGAG
CTGACCTATGATATCGAGGATGTCATCGACAAGTTCATCCACCAGCTCGGTAATGGCGGC
CAGCACCAGGGTGGCTTCAAGGAGTTCTTCCGCAAGACCGCTCGCCGTCTCAAGACTCTG
GGGTCTCGTCGCGGTGTCGCGAACAAAATCGATGATTTGAAGATTCGTCTCAAGCAGGTA
AAAGATTTGAAGACTAGTTACAAGCTGGATGATATTAACTGCAGCAACTTTGAACATTCA
GTTGTGGACCCCCGCTTGTCTGCTCTGTTTGTTGATGAAGCACAGCTTGTGGGAATTGAT
GGTCCAAGAGATGAGCTTGCCAAGTGGATGTTGCAAGATGAAAATGGCTCGACCAGGCAT
CGCAAGGTGTTGTCCATTGTTGGCTTTGGTGGGTTGGGAAAAACAACACTGGCCAAGGAG
GTCTACCGTAAGATCCAGGGGCAATTTCATTGTCATGCTTTTGTCTCAGTCTCGCAAAAG
CCAAACGTAAAGAAAATTATGAAGGATTTGATATCCCAGGTGCCTTGCAAGAAAGATTTT
ACAGAATGTATCAACACTTGGGATGAAACAAAGTGTATTGCAAAGCTCAAAGAACTCTTG
CAGGATATGCGGTAATTTCACCCCCATCCCCTCCTCTTTAAAAAAAGAGGTGTGCTTCGG
TACAACCCCCCTCCCCCACAAAACGTATAAAGGAGAATGTATACCCACCTCGTATTGTAC
ACTATAG