Contig Data
morexGenes
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Map Locations of contig_1565240 (5625 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1565240

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13263 1 847 bp None Available Available None
MLOC_13264 5 2735 bp MLOC_13264.1 Available Available LOC_Os12g23770.1, FRAME:-2, EVALUE:5e-65, 13112.m02415 protein retrotransposon protein, putative, LINE subclass





CDS Structure of MLOC_13263






CDS Structure of MLOC_13264






Contig Sequence (5625 bp)

>contig_1565240 5625 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGCAGTGCCATGTCGTCCGAGCAAAGACGCAACCAACCAGAAGATG
GTCGAGGGTTTCAGGCTCCTGACAGCATAGGATGCAGATGGGGTCGTGGTGGAGTCCATG
GTGAGCCAGCTGGTCCGCCGTCCAGCAGCGATATTGCGCCGCGAGCCAGAGGAAGAACTT
GACGCTCAGGGGGGCCCAGCTTCTCCAGATTAGCTTCTACCGGGGGCGGTTGTGCTGCCA
AGGAACATGGCGTTGTAGCAGGAGGCTGCGGTGTAAAATCCAGAGCTCGTCCACCGCCAG
ACGAGAGTGTCCGGCTGCTCAGATAGTCACTCTCGTCTGCTCAGATAGTGTCACATGCTG
CAGGAGTCGCCAAATGTCGACGTAATCAACAAGGGCCGCAGGCCCAAGAGCCCCTCGGAT
GTCCTGGATCCAAGCTCGGTCAGAGAGACCTTCCCTCATAGCGCAGCTGCGTTTGCGCCG
GCGTGGGATTAGGGCAGCAAGAGAGGGAGCCACGAGACCAATCGATTGGCCGTCAAGCCA
GGGGTCCGTCCAGAATATGCAGGAGCGGCCGTCTCCCAAAGTCCAGCGTGTCGAAGCTCG
GAAGAAGTTTCGAACCTCGGGGTTGTGAGGCAGGGGCAAGTGAGACCATGACCGGGTTGG
ATCAATGGCTTGAAGCCAAAGCCACCAGATGCGGAGGGAAATGCCAGTGTGCTGCAGGTC
ACGAACACCAAGCCCTCCCAGCTTGATGGGCCAACAAATCTTGGCCCAGTTAACCAGACA
GGCACCCGCACCCGCGCTTGGGTCCTTCCGGCCATGCCATAGGAAGTCTCTGATGATGCG
GCGAACCTTCTTGAGAATGGGCGGTGATAGAGCCAGCGCCAGCAAGATGTGTACGTGCAT
TGCAGAGAGCACATGCCGGACTAGTGCAAGCCTCTCGTCGCGGGAGAACATGGACGCCTT
CCATGTAGCCAGCTTCTTGAGGAGCTTGTCCACAAGGGGGAGAAGCTGAGAGGAGGAGAC
TTTCCGGGTGGACAACGGTAGGCCTAGGTATTGAATGGGGAATGGCACGACGGAGCAAGT
CAGGGCATCCACGATGCTCTCTGAAGGTAAATGATGAGTACATTTGATGAGCAAGAAATA
TTTGAGATGTGTCAAAAGCAGCAAGTAGTAATGTGATCTAGAAACAGATTCTGGCCAAAA
ACCATAGCACGAATGCTTTGCTAGGCTGATGGTCCATTGGCTGCATCTGTTCCTAGACAT
ACCTTTAACCCGTTGTTGGTGCTCCGTTGTTCTTCTGAACATTCTTTTCCAGATCACCGA
CACAAATCATGTGGGCAATCTCCACAGAACACCACCAGGTGGATTTGCCCAAGCAGGTTT
TGAGCTGATCTCCCACCATCTTTCCGCTTCAATCAAGTCTTGCCTAAATCATCTAAATGC
TTGCGAATAAAACATGCATCTTTGATAATGTTTTCTAATAATTGATTAAACCAGAACCAA
CTCATGTTAAACCATTTTCTTTCTGTAAATCATTCTAACAAACACATGGCAAGCATATTA
AAAGTTATACATCTCTGCCAAGCATTTTTGGCAAACTCTTGATATGGGTAACTTGATGCA
CTGATAAAATAAACAGTAGGGAAGGGCAAGAAACGAAGCAACCTGGGTTCTGAGAAGGCT
GTTAGTCTAGCGGCTTCAACAGATGGGAGAGCTTCATGCCTGTCCTTGCTGCACGCGGCT
CTAGGGGAGTCGTGGTTTTGAGGCCGGCTGCTGCTGAGATAGAACAGAAGGGAGAGCCGC
TTCTCTGGTGGGACTCAACGGCTCCGGGGTGGAAGAACTCTGAAAAATCGAACCTGAGAT
CGGCTCCTGTGGCTGTGAACATGGGCCATGGCAATTGAGTGTGAGGGAGGCACAAAGGTC
ATGCCATCTCCTGCGCTCGCGACGAAGAAGCTGCAAGCCGGGAAGGTGACCTCATTGGCT
TCTTTGGCGGTCAGCGCCTGCCTGAGCATCGAGGAGGTCACCGAATTCCGAGGGGACGAC
GGCCATGGGAGGTTGAGGCGCATGAACTGCTCGCTCATCTTCTTGCGGTGGCACATCAGA
GGTTATCCCGTGAGATGGCGGAGCGCTTGCGGTGAGGTATGCCAACTCGCTGTCCACCGT
CCACCAGTCCGACTTTGTCGCGCCTATCACAGAGGCTGGACTGGCCATCTGCGACCGTCC
AGTGCCACCGGTGACGAAGCCACCTTGATGGTGTGCCTAATGGCGCTGTGTGTGGATGTG
GGAGATGACGAGCGTTTGGCCCTGCCTGGTTGTGCAGCCAATCGGGAGCACGTCCCAGCC
CCACCTTGCGATCCTTTTTCCCCCTGTGGCCGCCTGCGATCTCCAAGTCGGATAGCACTA
GAGGCAGTTAGGAGAGCACAGGAGAGCTCTACATAAGAGCAGGGCAGTTGTGCTTCGGCG
CCGCGAGGACATGGGCGTGTATGTTTTTTTTCCGCCCTAACCGATTGTGCATGTAGTTTT
TCTCCTGATTTTTTAATGATGTTTTTTCTCCCGATTTTTTATCATGCGGGGATAGGAAGG
ACCGCAGGACAGTAGACAAAACTCTTTTTGTAATAGTAGAGATTTATTAATAGTGCATTA
ATGAGTGTTGTCCCTTGCATCTTAAACAAAAAAGGAAAAACTATCACGTGTTCCTCAAAA
CTATGAACATTGTAGAATGTGTTTGTTCCCAATAATAATATATGTGACTCAATTGTGATG
GGATAACCTCGCTCCTGAACTTGTAGTGACAGCTGTTTGGAGTTAATGTGTAGATTACTT
CAAGCATGTCTATGTTACATGTAATTAGTTGACTTGCCTAACTGTTATGCATTTTTTAAA
CAGAAATTAAAGCAGCAAGAAAAAGAAAGGAAAGAGCAAAGGATCTTGAGGGCATAGACA
TGAGCAATATTATTACGAGTTCTCGTAGGAGAAGTGCATCTAGTTTTATACCCCTGGCAG
TGCCTAAAATTGAAGCTGGTAGTGACAGCGATGATGATGATGATGGTGAAGACGAGAATG
TGGAGGGTGGAGATAAAGGTGACGACGACGAAGCAGAAGCTGGAGATGGATCTGCTGATG
GTATGATTCAATAGTTTGTAGCACTTGAATTTACTGTAAACAGCGTTGCTATTTACAACT
TTCTTTCGTGTTGTATTGAGGAGAAATATCAATTGTTGTCTACATTATTTTTTTTGTGAC
GAAGTCTAGAAAAAATTGAACTTTGAAAGATATGAACGTGGCAGTCAGCACTTGGTGTAG
TGTTTTAAAAGTTTTTATCACTCTTGCACCTATATTTATCTTCTTTTGTATCCTGCAAAT
ATTATCAAGTTTGATCCTGAAACTTTGTAGTGCCATGGAAGTCTGACATTTTTCAGTTTG
AGAATTTCATGAAACTCCTGCATACATATCCATTTACATATGTTTTCTGTTGATTCCTAC
GTTGACTAGTAAAGGAGTGCCATGATTCAAATTGCCTAAAATATGTGTAGGTTATGTGAG
CCACACAATCTGATGGGAAAATATTACTTTTTGATTCAAAGTATTTCCATGGGAATTTTG
GAGGGTTGGAATCCTGGGGAATTTTCCTGTACCAGTCGTTTGGCTCGTATGACTGAATCC
CATACAATTTTTTCCTAAGTATTCCATTGTTGTACATTTCATATGAAATTTTGCATTGAC
TCAAACCTGCTGGAAAAGAATCATTTGCTTTTCCTGTGAAGCAATCACGCAAACCCAATT
CTTGTAGGATACAAATGGACATGACATTGCAATTCTATATTTTTCCTATTCTTGCATTTT
AAGAATCTTGTGAACCAAAGAGGCCCTTAAGCCTTTATTTGTTAGCGGTTTATTGCTTTG
ATGTTCTCTCGTGCTAAATGTACTAATGCAAAACTGCTTGCACTATCTGAACTGTCCACA
TATGTTTCTTACCATAGTGACAATTTTATGCCTGTTCAGATGCTGGAAACGGGAGCAATT
GACTCTGGCGTTACTACGATACAAGGTAGAAAGAACTAGTTCTGGCCTTGACTGGTTTGC
TGTGGGCCGGGATGAAGCCAGTTATTCAGAAGTTACTTTCTGACATTTGACTTGTTCGGA
GTATATTATTGGCTGGGCATGGCGTGTTATATCAGGCGTGTTATCTATTCAGAATCGTGT
GTTCATGTAGTTCGAAAGCTACAGCAACATTATGTTTGTTCGATATCTGACGTATGAAGA
AGTCGTATCTTATCAATTTTCAGAAATCGTCATGTTGCCCACTCGTGGTGATCTTGTGGC
TGATGATTTTTCGTGGCATTCCTTGTTGTAGTCATATTTCGTTTAGTTTTATTTAGGACG
CCGATAAGCCTTGAACGTTCCGGATATGACCATGGCAAAACGAACATTTTCTGTGACAGT
TTATGTTTGTAAATCATGGTAAGTTTAGTTGGCAAGCATAATAAATTTGCCTCTAATTTA
TTTTTACCAAGAAATTGCTGTGCTTGTAAATAAAAGTTGTCATTTCGTGTCAACTAAAGT
TGTCAAAAGTTGCCATCTCGCGTTAACTAAAGTTATATAAAAAAAGTTTGATTTGCCATG
GTCAAAATCCAAACGTACAGGTTATATCATTTCGTACATATATGCTTGGTATGATGCAAA
CGATAAGCTCCCATGTTCTTAGCTTTTTAGCAACCAAACTTCTGTATTAGTTATGACGGG
ATGTTGATTAACGAGCCTAAAATGCTGCACGCTTATAAAATTTCTAAAGAAGCCCCCTCA
TCTTGGTTGAGGTGACACCTGCGGAAACCTAGCCCGTGTTGTCCGGCCATCCTCTCGCCC
TACTTCCTTCCCATGCCATCGACGAAGGAGGCTGCCAGGTTAAGCTTGGTTAGTAGACGA
CTACGGCGAGATCAACTTTCTCTCGTCATGCCGTTTGAGCACGGGGTGGGGAGGCTCGAC
CCCCTTCTTTTGTGTTGACCGATGGATCCATTAATGGCTTCGATTGTGTCGCCGGCGGGC
CTCTATGCTTCCTTCTACGACGTGGTGACTGCTTGGCAGCGTCTCTCGCGGGTGGTAGCC
GCGGGAAGTTCGTTGTTGGGCTCCTGGTCTTTGGCCTATCCGCTCTTCTCCGAGAGTCGG
GGCGGGCGCGGCCCTCTCGCTTGCTTGTGAGGCGCGTTGATACGTTTTCAACGTATCTAC
AATTTATGAAGTATTCATGTCATATTTACCTATGTTTATAATACTTTTATATGATTTTGA
TGCACCTTATATGATTTAATTAGAATTAACCTGCACTGACGTTGTCTTTAGTAGAATTAC
TGTGGTGTTATTTTTTGTGAGGAAAAATAAAAGTTTTCAAAATCGCCAACTTTTTTTGGC
GATTTTTTAGAGCAAATAAGAAAGCCAGAGCGAAGAACCATCGAAGGGGGGGTCCATCTG
TTGGTGCCAAGCCAACACGATGCGTCCACACCCCCCCCCCCCCCCCCGCGCCGCCCCTCC
CAAAAAAACAATAAAAAAAATATTACAAACAAAATAAAAAAAGAGACAAACACACTGGGG
AGCAAGTAGAAGACAATAAACACACAAAATCATTACACAACAAGT