morexGenes - Barley RNA-seq Database

Contig contig_1565238

Source Contig contig_1565238

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1565238 (2684 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1565238

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13261	1	557 bp	AK376069	Available	Available	None

CDS Structure of MLOC_13261

Contig Sequence (2684 bp)

>contig_1565238 2684 assembly3_WGSMorex_rbca.fasta
AGGGACATTGTTTTGTCTATATAACCACACATGTATCTATGCTTTCATTNNNNNNNNNNN
NNNNNNNNNNAATAAACGGTTATCTTGAAACAGGAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNTCTAGGGCATATTTCCAACAAGGCAATACTCTCAAATCTAACCGTCTCATTCATGG
TGCTAAAGTGTTTTCTCATGCTCCTTTCAGAACTTCTAGAGTTCCAGGAATTGAGCAAGG
TCAATTGCGCACAGGCATGGGAGTTTACTTTTGTCTTCTTCTTCTAATAGGGATATTAAT
ATATAGATTCAAGCTTCAGGCCCTCTCACGGACACTCCTCTTCAAGCTGAAGCAATTTCT
CTTGCTTGTGCTGCACACTTGGCGGCTTGCCTTAACATTCAAATTCCTAATTTTTTTAAC
TGATTATCTTTCTCTTGCCAATGTTGCTGCTGCGAGGAATATTGCTCACTCTTCTACTTC
TTGGAGTATTAGAAAAAAGTGGTTTCTTTTTTAAACTCTACTTCTAATCTTAATCCCCAG
GTTTTTCATATTTTTAGGAATTTGAATGGGGTGGCTCACAGTTTAGCTCATCAAGTTTTT
CAATTAGCTTGAGTATCTACACTCAATTGCTCTTCTCACTCTCATGTGGCTGATTCATGT
CCTGTAGCTGCCTCTCTTGTTGATTTTGAACTTTGCAGGAATTCAGCTTCATAAGGTGTA
TTGCTTTTAGGTGGAAGTTGATGGCTCCGGGATGTTCCTCATCTCAATATGATCTGATTG
TCTCTGCTCGGCTGATGGAAACAAGGATATTGCTGTCAAAGCTGGAATTTTTTTTCTCCT
TCTCTTCCTTTATTCCTTAGGACATGTTGTTCTTCAGTAAGGATCTTGGTCCTTGCTCTC
TCACATGTCTTTGTTCAACTCTTCTTTCGTTATATTTGTAGTTCTTCTTTTCTTTATCTT
CTGATAGATGGTGTAATCTTGCATGTACAATGTTCTATGAGCTGAATATATTGGCACCTC
TCTATTAAAAAAAAGGTTGAGAAATGGGGAGTGCATGGAATTCATGAGCTGGCTCCTCTT
GCGAGGAGACGGGGAGAATACATCAAGCCAGATGATGTCCCTCTCTCTTTAAAAATATCC
TCACGGAGGAATGTAATAACTCTTCTCCTGCTATGTAAGTTGTGGCCAGTTTGGTTCCTT
AAAAATAAAGTAAAATAATTAACAGTAACCACACTACTATTAAGCATTTGCCTATTTTTT
TTTTCTAGTAGTGAAGAAATGGCGCCCTCCCCGACCTCCCCCGAACTCGAATCTTTGGTG
AAGGAGATGCTAGCGAGGACGATTGAAGCTCTCCACGACGCGGGGTGGCCGGAGGAAGCA
AGATTCGTCACAGATTTGGGGAGGAGGCAGTGGCAGAACAACGGGCACGCGCGGAAAAGT
CCATCCCGCCAAGACGCGTTTGGAATAGAGGAAACCACACAGAAGGAGGGGAAAACATAA
GATCTGATGGCGAGAGCGATATACAACATCTATGTAAGCCTTTTTTTTATCCGAATATTG
TATATCAACAGTTAAATTTCGGTCGGACGAATACATCGGCTTTGCTAGAGATGTTTTTAT
GAATGTCCACCAATGCCATTGGAGGTCTTTGGGACTAGTGAGACCCCACACCATTTACAT
CTACAAACTGGTGGGACCATTTGAGTTGTTCATTACAGAATTCGAACGCGAAGCTCTTCT
CGATGAAGTGGTGGACAACATAGGCCCTCTTTTGCATCCTAGGGTTAGAGTTAGAGTTGG
TTAGATTGAACTCATCTAACCCTAAAAAATCCAAAGAGGTGGGTTAGAGTTGGTTAGATG
CATCTAACCCACCCAAAAAATCTAACCCACCTAAGAGGTGCTTTTTTGGGTTAGAGTTAG
GTGAAGCCTAGAAAAAGTTGCTTTTCTCTCTCCCTTCACCACACAAAATCCTAGATAAAG
GAGGCAAATGATTGGGAAAAGTGCATTTATTGGCAATCTAACCCTTACATCCAAACACCT
CTTTGGTTAGAGTTAGTTCATGGTTTGTCTAGAATTACAATTTAACTCTAACCTCTAACC
GAGTTAGAGTATCCAAACATGGCCATAAAGGTTGTTGTCGCCAGCCTGAGTTTGAATCTT
ATCTCTCCTAATAATAAAGCGCGGAGCGCTTCTGTCGTCCGTCGTGGCTCTTTTGCAGAA
AAGTACCTGTCTTTCCAAGTAATTAACCCGCGGTCCTTTTGTAAGGCACATCGAACCATT
TTTTCGCGCATATTTACAAGCAACCCCTTATAGTTTCTTGAAATCAACCCGCTCCACTCT
TAATGACGCAACGCGGTCGAGCGAGGAGGGGGCAGAGGAGCTACCATTGCTGCTCGCGGA
GCTCGGAGAAGAAATGACCGCCTCCTTGCCAGGTGATGGAGCAGCAGGACCGGTGCACAG
TGGCACTCAGTTGGTCGCTAGATCTCGCATTCATCACCCAGTTGCAACGCGACTCGCTGC
GTATGGGCTCCTAGCTGAAGGTCGGCCTGCGCGCGGGAGTGCCGGCCCGCCCAGGCTCCG
CACGATGGCCGCGGCCATGTCGGCCGACACCGGCATGGACGGGATCGTCGGGAACCGCCG
CCTGACCGCCTCGTGGTCGAACCCTAGCCGCTCCGCGCCGTCCG